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Aliases for TMEM160 Gene

Aliases for TMEM160 Gene

  • Transmembrane Protein 160 2 3

External Ids for TMEM160 Gene

Previous GeneCards Identifiers for TMEM160 Gene

  • GC19M052242
  • GC19M047549
  • GC19M043973

Summaries for TMEM160 Gene

GeneCards Summary for TMEM160 Gene

TMEM160 (Transmembrane Protein 160) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMEM160 Gene

Genomics for TMEM160 Gene

Regulatory Elements for TMEM160 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for TMEM160 Gene

Start:
47,045,907 bp from pter
End:
47,048,723 bp from pter
Size:
2,817 bases
Orientation:
Minus strand

Genomic View for TMEM160 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TMEM160 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMEM160 Gene

Proteins for TMEM160 Gene

  • Protein details for TMEM160 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NX00-TM160_HUMAN
    Recommended name:
    Transmembrane protein 160
    Protein Accession:
    Q9NX00
    Secondary Accessions:
    • Q9BU41

    Protein attributes for TMEM160 Gene

    Size:
    188 amino acids
    Molecular mass:
    19658 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TMEM160 Gene

Proteomics data for TMEM160 Gene at MOPED

Post-translational modifications for TMEM160 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for TMEM160 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for TMEM160 Gene

Domains for TMEM160 Gene

Protein Domains for TMEM160 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for TMEM160 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9NX00

UniProtKB/Swiss-Prot:

TM160_HUMAN :
  • Q9NX00
Family:
  • Belongs to the TMEM160 family.
genes like me logo Genes that share domains with TMEM160: view

No data available for Gene Families for TMEM160 Gene

Function for TMEM160 Gene

Phenotypes for TMEM160 Gene

GenomeRNAi human phenotypes for TMEM160:
genes like me logo Genes that share phenotypes with TMEM160: view

Animal Model Products

CRISPR Products

miRNA for TMEM160 Gene

miRTarBase miRNAs that target TMEM160

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for TMEM160

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targeting and HOMER Transcription for TMEM160 Gene

Localization for TMEM160 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TMEM160 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TMEM160 Gene COMPARTMENTS Subcellular localization image for TMEM160 gene
Compartment Confidence
mitochondrion 2
endoplasmic reticulum 1
nucleus 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for TMEM160 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005739 mitochondrion IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with TMEM160: view

Pathways for TMEM160 Gene

SuperPathways for TMEM160 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TMEM160 Gene

None

No data available for Pathways by source for TMEM160 Gene

Transcripts for TMEM160 Gene

mRNA/cDNA for TMEM160 Gene

(75) Selected AceView cDNA sequences:
(2) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TMEM160 Gene

Transmembrane protein 160:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for TMEM160

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TMEM160 Gene

No ASD Table

Relevant External Links for TMEM160 Gene

GeneLoc Exon Structure for
TMEM160
ECgene alternative splicing isoforms for
TMEM160

Expression for TMEM160 Gene

mRNA expression in normal human tissues for TMEM160 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for TMEM160 Gene

SOURCE GeneReport for Unigene cluster for TMEM160 Gene Hs.105606

genes like me logo Genes that share expressions with TMEM160: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for TMEM160 Gene

Orthologs for TMEM160 Gene

This gene was present in the common ancestor of chordates.

Orthologs for TMEM160 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TMEM160 35
  • 99.29 (n)
  • 99.47 (a)
TMEM160 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia TMEM160 35
  • 88.3 (n)
  • 93.62 (a)
TMEM160 36
  • 94 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TMEM160 35
  • 89.18 (n)
  • 93.09 (a)
TMEM160 36
  • 93 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Tmem160 35
  • 84.4 (n)
  • 94.15 (a)
Tmem160 16
Tmem160 36
  • 94 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia TMEM160 36
  • 68 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Tmem160 35
  • 85.11 (n)
  • 94.15 (a)
zebrafish
(Danio rerio)
Actinopterygii Dr.17783 35
tmem160 35
  • 58.52 (n)
  • 54.2 (a)
tmem160 36
  • 39 (a)
OneToOne
Species with no ortholog for TMEM160:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for TMEM160 Gene

ENSEMBL:
Gene Tree for TMEM160 (if available)
TreeFam:
Gene Tree for TMEM160 (if available)

Paralogs for TMEM160 Gene

Pseudogenes.org Pseudogenes for TMEM160 Gene

genes like me logo Genes that share paralogs with TMEM160: view

No data available for Paralogs for TMEM160 Gene

Variants for TMEM160 Gene

Sequence variations from dbSNP and Humsavar for TMEM160 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs1862498 -- 47,046,307(+) GGAGC(A/G)AAGCC intron-variant
rs1862499 -- 47,046,533(+) AGGGC(A/G)GGTGA intron-variant
rs2303106 -- 47,046,786(+) CACCC(C/T)ATCCC intron-variant
rs4804017 -- 47,049,783(+) acccc(A/G)tctct upstream-variant-2KB
rs7507142 -- 47,050,535(+) ggtac(A/G)gtttt upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for TMEM160 Gene

Variant ID Type Subtype PubMed ID
nsv912192 CNV Loss 21882294
nsv912193 CNV Loss 21882294
nsv2512 CNV Insertion 18451855
dgv3962n71 CNV Loss 21882294

Relevant External Links for TMEM160 Gene

HapMap Linkage Disequilibrium report
TMEM160

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TMEM160 Gene

Disorders for TMEM160 Gene

No disorders were found for TMEM160 Gene.

No data available for UniProtKB/Swiss-Prot for TMEM160 Gene

Publications for TMEM160 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. Defining the human deubiquitinating enzyme interaction landscape. (PMID: 19615732) Sowa M.E. … Harper J.W. (Cell 2009) 3
  5. Network organization of the human autophagy system. (PMID: 20562859) Behrends C. … Harper J.W. (Nature 2010) 3

Products for TMEM160 Gene

Sources for TMEM160 Gene

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