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TMEM144 Gene

protein-coding   GIFtS: 42
GCID: GC04P159131

Transmembrane Protein 144

  Search for TMEM144
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Transmembrane Protein 1441 2

External Ids:    HGNC: 256331   Entrez Gene: 553142   Ensembl: ENSG000001641247   UniProtKB: Q7Z5S93   

Export aliases for TMEM144 gene to outside databases

Previous GC identifers: GC04P159351 GC04P154882


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for TMEM144 Gene:
TMEM144 (transmembrane protein 144) is a protein-coding gene.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000004.12  NT_016354.20  NC_018915.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the TMEM144 gene promoter:
         E2F-4   E2F-3a   E2F-5   Lmo2   E2F-2   PPAR-gamma1   S8   Nkx6-1   E2F   E2F-1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidTMEM144 promoter sequence
   Search Chromatin IP Primers for TMEM144

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat TMEM144


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 4q32.1   Ensembl cytogenetic band:  4q32.1   HGNC cytogenetic band: 4q32.1

TMEM144 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
TMEM144 gene location

GeneLoc information about chromosome 4         GeneLoc Exon Structure

GeneLoc location for GC04P159131:  view genomic region     (about GC identifiers)

Start:
159,122,756 bp from pter      End:
159,176,563 bp from pter
Size:
53,808 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
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UniProtKB/Swiss-Prot: TM144_HUMAN, Q7Z5S9 (See protein sequence)
Recommended Name: Transmembrane protein 144  
Size: 345 amino acids; 37653 Da
Secondary accessions: D3DP24 Q49A05 Q9NUT3
Alternative splicing: 2 isoforms:  Q7Z5S9-1   Q7Z5S9-2   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for TMEM144: NX_Q7Z5S9

Explore proteomics data for TMEM144 at MOPED


See TMEM144 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_060812.2  
ENSEMBL proteins: 
 ENSP00000425266   ENSP00000421289   ENSP00000422255   ENSP00000422297   ENSP00000296529  
 ENSP00000424659   ENSP00000422082   ENSP00000425815   ENSP00000426211   ENSP00000420990  
 ENSP00000420930   ENSP00000425907   ENSP00000422899  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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1 InterPro protein domain:
 IPR012435 DUF1632_TMEM144

Graphical View of Domain Structure for InterPro Entry Q7Z5S9

ProtoNet protein and cluster: Q7Z5S9

1 Blocks protein domain: IPB012435 Protein of unknown function DUF1632

UniProtKB/Swiss-Prot: TM144_HUMAN, Q7Z5S9
Similarity: Belongs to the TMEM144 family


TMEM144 for domains           About GeneDecksing


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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     Gene Ontology (GO): 1 molecular function term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0015144carbohydrate transmembrane transporter activity ----
     
TMEM144 for ontologies           About GeneDecksing


Phenotypes:
     1 GenomeRNAi human phenotype for TMEM144:
 Decreased nuclei size in G2M 

Animal Models:
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miRNA
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Selected qRT-PCR Assays for microRNAs that regulate TMEM144 (see all 10):
hsa-miR-610 hsa-miR-3921 hsa-miR-138 hsa-miR-2117 hsa-miR-205* hsa-miR-3662 hsa-miR-3143 hsa-miR-3148
SwitchGear 3'UTR luciferase reporter plasmidTMEM144 3' UTR sequence
Inhib. RNA
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Predesigned siRNA for gene silencing in human, mouse, rat TMEM144

Gene Editing
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DNA2.0 Custom Codon Optimized Gene Synthesis Service for TMEM144
Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat TMEM144

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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot
TM144_HUMAN, Q7Z5S9: Membrane; Multi-pass membrane protein (Potential)
Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
plasma membrane3
nucleus1

Gene Ontology (GO): 1 cellular component term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0016021integral component of membrane IEA--

TMEM144 for ontologies           About GeneDecksing


(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for TMEM144
Interactions:

    Search GeneGlobe Interaction Network for TMEM144

Gene Ontology (GO): 1 biological process term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0034219carbohydrate transmembrane transport ----

TMEM144 for ontologies           About GeneDecksing



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
   Browse drugs & compounds from Enzo Life Sciences
  Browse compounds at ApexBio 

Browse Tocris compounds for TMEM144 (TM144)



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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REFSEQ mRNAs for TMEM144 gene: 
NM_018342.4  

Unigene Cluster for TMEM144:

Transmembrane protein 144
Hs.176227  [show with all ESTs]
Unigene Representative Sequence: BC050297
17 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000505049 ENST00000505189 ENST00000511038 ENST00000508243 ENST00000296529(uc003ipx.3 uc010iqi.3)
ENST00000512481 ENST00000504569 ENST00000509278 ENST00000514558 ENST00000513744
ENST00000514346 ENST00000503200 ENST00000511532 ENST00000502698 ENST00000514971
ENST00000503404 ENST00000512272
miRNA
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Selected qRT-PCR Assays for microRNAs that regulate TMEM144 (see all 10):
hsa-miR-610 hsa-miR-3921 hsa-miR-138 hsa-miR-2117 hsa-miR-205* hsa-miR-3662 hsa-miR-3143 hsa-miR-3148
SwitchGear 3'UTR luciferase reporter plasmidTMEM144 3' UTR sequence
Inhib. RNA
Products:
     
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Predesigned siRNA for gene silencing in human, mouse, rat TMEM144
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GenScript: all cDNA clones in your preferred vector: TMEM144 (NM_018342)
DNA2.0 Custom Codon Optimized Gene Synthesis Service for TMEM144
Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat TMEM144
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Pre-validated RT2 qPCR Primer Assay in human, mouse, rat TMEM144
  QuantiTect SYBR Green Assays in human, mouse, rat TMEM144
  QuantiFast Probe-based Assays in human, mouse, rat TMEM144

Additional mRNA sequence: 

AK002017.1 BC026318.1 BC035811.1 BC036551.1 BC048117.1 BC050297.1 BC054487.1 BC060875.1 

14 DOTS entries:

DT.101982476  DT.97799189  DT.95126061  DT.91726037  DT.99977186  DT.91834672  DT.95257481  DT.113303 
DT.121219647  DT.121219643  DT.121219662  DT.91726039  DT.95069047  DT.40255526 

Selected AceView cDNA sequences (see all 142):

AK129723 BC035811 AW173735 BX112844 BI753496 H40933 AK126266 BQ268684 
AW173720 BE835296 CB156739 AL120648 CA431715 N98471 BC060875 BM986991 
N62499 AI914416 AI265860 AL596685 BF967179 N66082 BC026318 BC048117 

GeneLoc Exon Structure

Selected Alternative Splicing Database (ASD) splice patterns (SP) for TMEM144 (see all 13)    About this scheme

ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b ^ 3a · 3b · 3c ^ 4 ^ 5a · 5b ^ 6a · 6b ^ 7a · 7b ^ 8a · 8b ^ 9a · 9b ^ 10 ^ 11a · 11b ^ 12 ^ 13 ^ 14a ·
SP1:                          -     -                 -     -           -                                               -           -                           
SP2:                          -     -                 -     -           -                                               -     -     -                           
SP3:                                                  -     -           -                                               -           -                           
SP4:                          -     -                 -     -           -                                                                                       
SP5:                                                                    -                                                                                       

ExUns: 14b ^ 15
SP1:            
SP2:            
SP3:            
SP4:            
SP5:            


ECgene alternative splicing isoforms for TMEM144

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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TMEM144 expression in normal human tissues (normalized intensities)      TMEM144 embryonic expression: see
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: TAAGAGCTAC
TMEM144 Expression
About this image


TMEM144 expression in embryonic tissues and stem cells    About this table
Data from LifeMap, the Embryonic Development and Stem Cells Database
 selected tissues (see all 2) fully expand
 
 Brain (Nervous System)    fully expand to see all 2 entries
         Myelinating Oligodendrocyte Cells Forebrain White Matter
         Cerebral Cortex
 
 Heart (Cardiovascular System)
TMEM144 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

TMEM144 Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.176227
    Custom PCR Arrays for TMEM144
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In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TMEM144

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of animals.

Orthologs for TMEM144 gene from Selected species (see all 14)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Tmem1441 , 5 transmembrane protein 1441, 5 83.19(n)1
86.67(a)1
  3 (35.07 cM)5
706521  NM_027495.41  NP_081771.21 
 798131535 
chicken
(Gallus gallus)
Aves TMEM1441 transmembrane protein 144 73.47(n)
69.1(a)
  422414  XM_004940906.1  XP_004940963.1 
lizard
(Anolis carolinensis)
Reptilia TMEM1446
transmembrane protein 144
57(a)
1 ↔ 1
5(128485235-128502078)
African clawed frog
(Xenopus laevis)
Amphibia 480144742   -- 76.88(n)    48014474 
zebrafish
(Danio rerio)
Actinopterygii tmem144a1 transmembrane protein 144a 64.32(n)
65.4(a)
  445495  NM_001003999.1  NP_001003999.1 
worm
(Caenorhabditis elegans)
Secernentea R144.61 R144.6 51.81(n)
42.77(a)
  175678  NM_065661.4  NP_498062.2 


ENSEMBL Gene Tree for TMEM144 (if available)
TreeFam Gene Tree for TMEM144 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for TMEM144 (see all 914)    About this table    
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 4 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs111001541,2
C,F,A,H--159129407(+) taaaaT/Ctcatt 1 -- us2k123Minor allele frequency- C:0.37NS EA NA WA 2348
rs1866264991,2
--159129530(+) TATCCC/TTTACT 1 -- us2k10--------
rs1910255751,2
--159129578(+) TCTCCA/GTATTC 1 -- us2k10--------
rs1498320321,2
C--159129731(+) TCAGAC/GCAGAA 1 -- us2k10--------
rs125028061,2
C,A,H--159129761(+) ATGTTT/ATATAT 1 -- us2k11Minor allele frequency- A:0.00CSA 1
rs1142387061,2
C,F--159129930(+) ACAGAC/TGAAGC 1 -- us2k11Minor allele frequency- T:0.01NA 120
rs782538021,2
C,F--159130041(+) TTTAGT/CTTAAG 1 -- us2k12Minor allele frequency- C:0.15CSA WA 119
rs729738971,2
C,F--159130144(+) AGCCCC/TCAACT 1 -- us2k12Minor allele frequency- T:0.03WA 120
rs1439494321,2
--159130168(+) TAGAAA/TTTCTC 1 -- us2k10--------
rs766637561,2
F--159130178(+) CAGCAA/CATGCT 1 -- us2k11Minor allele frequency- C:0.01WA 118

HapMap Linkage Disequilibrium report for TMEM144 (159122756 - 159176563 bp)

Structural Variations
      Database of Genomic Variants (DGV) variations for TMEM144: --
Site Specific Mutation Identification with PCR Assays
SeqTarget long-range PCR primers for resequencing TMEM144
DNA2.0 Custom Variant and Variant Library Synthesis for TMEM144

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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TMEM144 for disorders           About GeneDecksing

Genetic Association Database (GAD): TMEM144

Export disorders for TMEM144 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for TMEM144 gene integrated from 10 sources:
(articles sorted by number of sources associating them with TMEM144)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (Nat. Genet. 2004)
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1, 3 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
  3. Genome-wide association with diabetes-related traits in the Framingham Heart Study. (PubMed id 17903298)4 Meigs J.B....Dupuis J. (BMC Med. Genet. 2007)
  4. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PubMed id 17207965)1 Lamesch P.... Vidal M. (Genomics 2007)
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S.... Malek J. (Genome Res. 2004)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 55314 HGNC: 25633 AceView: FLJ11155 Ensembl:ENSG00000164124 euGenes: HUgn55314
ECgene: TMEM144 H-InvDB: TMEM144

(According to HUGE)
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  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for TMEM144 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for TMEM144 gene:
Search GeneIP for patents involving TMEM144

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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 Browse OriGene Antibodies   OriGene RNAi products in human, mouse, rat for TMEM144  
 OriGene qPCR primer pairs and template standards for TMEM144   OriGene Protein Over-expression Lysate for TMEM144  
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 OriGene qSTAR qPCR primer pairs in human, mouse for TMEM144   Browse OriGene full length recombinant human proteins expressed in human HEK293 cells  
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 Block miRNA regulation of human, mouse, rat TMEM144 using miScript Target Protectors SeqTarget long-range PCR primers for resequencing TMEM144
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 Custom PCR Arrays for TMEM144 Search Chromatin IP Primers for TMEM144
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 Search Tocris compounds for TMEM144 (TM144)
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 Novus Tissue Slides
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 Proteins for TMEM144
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 Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TMEM144
 SwitchGear 3'UTR luciferase reporter plasmids for TMEM144
 SwitchGear Promoter luciferase reporter plasmids for TMEM144
 Search ThermoFisher Antibodies for TMEM144
 Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat TMEM144
 inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for TMEM144
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 LSBio Antibodies in human, mouse, rat for TMEM144
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GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014

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