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TMEM136 Gene

protein-coding   GIFtS: 38
GCID: GC11P120195

Transmembrane Protein 136

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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Transmembrane Protein 1361 2

External Ids:    HGNC: 282801   Entrez Gene: 2199022   Ensembl: ENSG000001812647   UniProtKB: Q6ZRR53   

Export aliases for TMEM136 gene to outside databases

Previous GC identifers: GC11P119702 GC11P116136


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for TMEM136 Gene:
TMEM136 (transmembrane protein 136) is a protein-coding gene.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000011.9  NT_033899.9  NC_018922.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the TMEM136 gene promoter:
         STAT1   AP-1   AML1a   ATF-2   c-Jun   STAT1alpha   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidTMEM136 promoter sequence
   Search Chromatin IP Primers for TMEM136

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat TMEM136


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 11q23.3   Ensembl cytogenetic band:  11q23.3   HGNC cytogenetic band: 11q23.3

TMEM136 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
TMEM136 gene location

GeneLoc information about chromosome 11         GeneLoc Exon Structure

GeneLoc location for GC11P120195:  view genomic region     (about GC identifiers)

Start:
120,195,838 bp from pter      End:
120,204,391 bp from pter
Size:
8,554 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: TM136_HUMAN, Q6ZRR5 (See protein sequence)
Recommended Name: Transmembrane protein 136  
Size: 245 amino acids; 27859 Da
Secondary accessions: B4DGQ4 B4E230 Q8IZ79
Alternative splicing: 4 isoforms:  Q6ZRR5-1   Q6ZRR5-2   Q6ZRR5-3   Q6ZRR5-4   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for TMEM136: NX_Q6ZRR5

Explore proteomics data for TMEM136 at MOPED


See TMEM136 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins (7 alternative transcripts): 
NP_001185599.1  NP_001185600.1  NP_001185601.1  NP_001185602.1  NP_001185603.1  NP_001185604.1  NP_777586.1  

ENSEMBL proteins: 
 ENSP00000364236   ENSP00000312672   ENSP00000434862  

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antibodies-online kits for TMEM136 (6 products) 


(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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1 InterPro protein domain:
 IPR006634 TLC-dom

Graphical View of Domain Structure for InterPro Entry Q6ZRR5

ProtoNet protein and cluster: Q6ZRR5

2 Blocks protein domains:
IPB000170 High potential iron-sulfur protein
IPB006634 TRAM


UniProtKB/Swiss-Prot: TM136_HUMAN, Q6ZRR5
Similarity: Belongs to the TMEM136 family
Similarity: Contains 1 TLC (TRAM/LAG1/CLN8) domain


Find genes that share domains with TMEM136           About GenesLikeMe


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Phenotypes:
     1 MGI phenotypic allele for Tmem136 (no phenotypes)

Find genes that share phenotypes with TMEM136           About GenesLikeMe

Animal Models:
   genOway: Develop your customized and physiologically relevant rodent model for TMEM136

miRNA
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miRTarBase miRNAs that target TMEM136:
hsa-mir-192-5p (MIRT026215), hsa-mir-122-5p (MIRT023242), hsa-mir-142-3p (MIRT021598)

Block miRNA regulation of human, mouse, rat TMEM136 using miScript Target Protectors
Selected qRT-PCR Assays for microRNAs that regulate TMEM136 (see all 57):
hsa-miR-579 hsa-miR-429 hsa-miR-146a hsa-miR-605 hsa-miR-632 hsa-miR-371-5p hsa-miR-374c hsa-miR-9
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GenScript: all cDNA clones in your preferred vector (see all 7): TMEM136 (NM_001198672)
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Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat TMEM136

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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot
TM136_HUMAN, Q6ZRR5: Membrane; Multi-pass membrane protein (Potential)
Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
plasma membrane3
extracellular1

Gene Ontology (GO): 1 cellular component term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0016021integral component of membrane IEA--

Find genes that share ontologies with TMEM136           About GenesLikeMe


(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for TMEM136
Interactions:

    Search GeneGlobe Interaction Network for TMEM136

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
   Browse drugs & compounds from Enzo Life Sciences
  Browse compounds at ApexBio 

Browse Tocris compounds for TMEM136 (TM136)



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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REFSEQ mRNAs for TMEM136 gene (7 alternative transcripts): 
NM_001198670.1  NM_001198671.1  NM_001198672.1  NM_001198673.1  NM_001198674.1  NM_001198675.1  NM_174926.2  

Unigene Cluster for TMEM136:

Transmembrane protein 136
Hs.643516  [show with all ESTs]
Unigene Representative Sequence: NM_001198670
5 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000375095(uc010rzm.2 uc001pxj.3 uc021qrl.1 uc001pxh.2 uc009zas.2 uc001pxi.2)
ENST00000314475 ENST00000531346 ENST00000529187(uc001pxg.3) ENST00000524680

miRNA
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Selected qRT-PCR Assays for microRNAs that regulate TMEM136 (see all 57):
hsa-miR-579 hsa-miR-429 hsa-miR-146a hsa-miR-605 hsa-miR-632 hsa-miR-371-5p hsa-miR-374c hsa-miR-9
Browse SwitchGear 3'UTR luciferase reporter plasmids
Inhib. RNA
Products:
     
OriGene RNAi products in human, mouse, rat for TMEM136
Predesigned siRNA for gene silencing in human, mouse, rat TMEM136
Clone
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OriGene clones in human, mouse for TMEM136 (see all 19)
OriGene ORF clones in mouse, rat for TMEM136
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GenScript: all cDNA clones in your preferred vector (see all 7): TMEM136 (NM_001198672)
DNA2.0 Custom Codon Optimized Gene Synthesis Service for TMEM136
Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat TMEM136
Primer
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OriGene qSTAR qPCR primer pairs in human, mouse for TMEM136
Pre-validated RT2 qPCR Primer Assay in human, mouse / rat TMEM136
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  QuantiFast Probe-based Assays in human, mouse, rat TMEM136

Additional mRNA sequence: 

AK096207.1 AK096813.1 AK128040.1 AK289680.1 AK294713.1 AK304086.1 BC015232.1 

7 DOTS entries:

DT.100751540  DT.309854  DT.100021272  DT.120690524  DT.97814734  DT.97834837  DT.40113388 

Selected AceView cDNA sequences (see all 84):

CA778080 BQ690587 BM971471 AW361691 AA422067 CR593728 CR602717 AW297273 
BC015232 AI822098 AL531164 BQ573722 BX281405 NM_174926 BU151499 AK097382 
BI546598 BQ719040 R56004 BX366734 CB960106 R46622 BP872238 AI338541 

GeneLoc Exon Structure

Selected Alternative Splicing Database (ASD) splice patterns (SP) for TMEM136 (see all 6)    About this scheme

ExUns: 1a · 1b · 1c ^ 2a · 2b · 2c · 2d ^ 3a · 3b · 3c · 3d ^ 4a · 4b
SP1:                                                  -     -     -               
SP2:                    -                                                         
SP3:                    -     -     -                                             
SP4:                                                                              
SP5:                    -     -     -     -                                       


ECgene alternative splicing isoforms for TMEM136

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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TMEM136 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: GGAACCAGGT
TMEM136 Expression
About this image

TMEM136 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

TMEM136 Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.643516
    Custom PCR Arrays for TMEM136
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In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TMEM136

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of chordates.

Orthologs for TMEM136 gene from Selected species (see all 12)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Tmem1361 , 5 transmembrane protein 1361, 5 88.84(n)1
92.65(a)1
  9 (24.20 cM)5
2353001  NM_001034863.31  NP_001030035.11 
 431086535 
chicken
(Gallus gallus)
Aves LOC1008578451 transmembrane protein 136-like 70.88(n)
72.24(a)
  100857845  XM_004948023.1  XP_004948080.1 
lizard
(Anolis carolinensis)
Reptilia TMEM1366
transmembrane protein 136
67(a)
1 ↔ 1
LGa(1388888-1395010)
tropical clawed frog
(Xenopus tropicalis)
Amphibia LOC1004891091 transmembrane protein 136-like 68.43(n)
71.14(a)
  100489109  XM_002935013.2  XP_002935059.2 
zebrafish
(Danio rerio)
Actinopterygii LOC1005377891 transmembrane protein 136-like 64.79(n)
61.47(a)
  100537789  XM_003198706.2  XP_003198754.1 


ENSEMBL Gene Tree for TMEM136 (if available)
TreeFam Gene Tree for TMEM136 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for TMEM136 (see all 261)    About this table                                 

Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 11 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1453688071,2
--120193885(+) CCCAGA/GATTTC 7 -- us2k10--------
rs1168499291,2
F--120193944(+) GTGGCC/TAAAGA 7 -- us2k11Minor allele frequency- T:0.03EA 120
rs127992991,2
C,F--120193956(+) ACATAC/TATCAA 7 -- us2k19Minor allele frequency- T:0.21NA CSA WA EA 370
rs1845340341,2
--120193964(+) CAACAA/GAATTT 7 -- us2k10--------
rs127994801,2
C,F--120194024(+) AAGGCC/TCAATA 7 -- us2k113Minor allele frequency- T:0.19NA EA CSA WA 732
rs1168813611,2
F--120194068(+) TACCCC/TCTCAG 7 -- us2k11Minor allele frequency- T:0.02NA 120
rs1894804011,2
--120194092(+) GAAGGC/TTTTAG 7 -- us2k10--------
rs3773537141,2
C--120194124(+) GATGGC/TGCAAG 7 -- us2k10--------
rs1487691871,2
--120194143(+) TCCAGA/GTTCAG 7 -- us2k10--------
rs360382331,2
C--120194188(+) GGGAA-/GAGGGT 7 -- us2k10--------

HapMap Linkage Disequilibrium report for TMEM136 (120195838 - 120204391 bp)

Structural Variations
     Database of Genomic Variants (DGV) 4 variations for TMEM136:    About this table    
Variant IDTypeSubtypePubMed ID
esv2549681CNV Deletion19546169
esv2533688CNV Deletion19546169
esv2457390CNV Insertion19546169
esv1582263CNV Insertion17803354

Site Specific Mutation Identification with PCR Assays
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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for TMEM136 gene integrated from 10 sources:
(articles sorted by number of sources associating them with TMEM136)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (Nat. Genet. 2004)
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1, 3 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (Genome Res. 2006)
  4. Human chromosome 11 DNA sequence and analysis including novel gene identification. (PubMed id 16554811)2 Taylor T.D....Sakaki Y. (Nature 2006)
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S.... Malek J. (Genome Res. 2004)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 219902 HGNC: 28280 AceView: POU2F3andMGC17839 Ensembl:ENSG00000181264 euGenes: HUgn219902
ECgene: TMEM136 H-InvDB: TMEM136

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for TMEM136 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for TMEM136 gene:
Search GeneIP for patents involving TMEM136

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from genOway)
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 Search Tocris compounds for TMEM136 (TM136)
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 Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies

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GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014 , 21 Aug 2014 , 8 Sep 2014 , 7 Oct 2014

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