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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

TMEM136 Gene

protein-coding   GIFtS: 36
GCID: GC11P120195

Transmembrane Protein 136

  Search for TMEM136
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Transmembrane Protein 1361 2

External Ids:    HGNC: 282801   Entrez Gene: 2199022   Ensembl: ENSG000001812647   UniProtKB: Q6ZRR53   

Export aliases for TMEM136 gene to outside databases

Previous GC identifers: GC11P119702 GC11P116136


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for TMEM136 Gene: 
TMEM136 (transmembrane protein 136) is a protein-coding gene.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000011.9  NT_033899.8  NC_018922.2  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the TMEM136 gene promoter:
         STAT1   AP-1   AML1a   ATF-2   c-Jun   STAT1alpha   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidTMEM136 promoter sequence
   Search SABiosciences Chromatin IP Primers for TMEM136

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat TMEM136


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 11q23.3   Ensembl cytogenetic band:  11q23.3   HGNC cytogenetic band: 11q23.3

TMEM136 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
TMEM136 gene location

GeneLoc information about chromosome 11         GeneLoc Exon Structure

GeneLoc location for GC11P120195:  view genomic region     (about GC identifiers)

Start:
120,195,838 bp from pter      End:
120,204,391 bp from pter
Size:
8,554 bases      Orientation:
plus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: TM136_HUMAN, Q6ZRR5 (See protein sequence)
Recommended Name: Transmembrane protein 136  
Size: 245 amino acids; 27859 Da
Subcellular location: Membrane; Multi-pass membrane protein (Potential)
Secondary accessions: B4DGQ4 B4E230 Q8IZ79
Alternative splicing: 4 isoforms:  Q6ZRR5-1   Q6ZRR5-2   Q6ZRR5-3   Q6ZRR5-4   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for TMEM136: NX_Q6ZRR5

Explore proteomics data for TMEM136 at MOPED 

TMEM136 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

TMEM136 Protein Expression

REFSEQ proteins (7 alternative transcripts): 
NP_001185599.1  NP_001185600.1  NP_001185601.1  NP_001185602.1  NP_001185603.1  NP_001185604.1  NP_777586.1  

ENSEMBL proteins: 
 ENSP00000364236   ENSP00000312672   ENSP00000434862  

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Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0016021integral to membrane IEA--

TMEM136 for ontologies           About GeneDecksing



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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section
1 InterPro protein domain:
 IPR006634 TLC-dom

Graphical View of Domain Structure for InterPro Entry Q6ZRR5

ProtoNet protein and cluster: Q6ZRR5

2 Blocks protein domains:
IPB000170 High potential iron-sulfur protein
IPB006634 TRAM


UniProtKB/Swiss-Prot: TM136_HUMAN, Q6ZRR5
Similarity: Belongs to the TMEM136 family
Similarity: Contains 1 TLC (TRAM/LAG1/CLN8) domain


TMEM136 for domains           About GeneDecksing


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
About This Section

Phenotypes:
     1 MGI phenotypic allele for Tmem136 (no phenotypes)

TMEM136 for phenotypes           About GeneDecksing

Animal Models:
   inGenious Targeting Laboratory - Custom generated mouse model solutions for TMEM136 
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(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
About This Section



Interactions:

    Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for TMEM136

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section
Browse Small Molecules at EMD Millipore
Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for TMEM136 (TM136)

Search CenterWatch for drugs/clinical trials and news about TMEM136 / TM136

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
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Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for TMEM136 gene (7 alternative transcripts): 
NM_001198670.1  NM_001198671.1  NM_001198672.1  NM_001198673.1  NM_001198674.1  NM_001198675.1  NM_174926.2  

Unigene Cluster for TMEM136:

Transmembrane protein 136
Hs.643516  [show with all ESTs]
Unigene Representative Sequence: NM_001198670
5 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000375095(uc010rzm.2 uc001pxj.3 uc021qrl.1 uc001pxh.2 uc009zas.2 uc001pxi.2)
ENST00000314475 ENST00000531346 ENST00000529187(uc001pxg.3) ENST00000524680

miRNA
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Sirion Biotech Customized lentivirus for stable overexpression of TMEM136 
                     Customized lentivirus expression plasmids for stable overexpression of TMEM136 
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Additional mRNA sequence: 

AK096207.1 AK096813.1 AK128040.1 AK289680.1 AK294713.1 AK304086.1 BC015232.1 

7 DOTS entries:

DT.100751540  DT.309854  DT.100021272  DT.120690524  DT.97814734  DT.97834837  DT.40113388 

24/84 AceView cDNA sequences (see all 84):

AW361691 BC015232 AW297273 AL531164 BQ690587 CA778080 AI822098 AA422067 
CR602717 BM971471 BX281405 BQ573722 CR593728 NM_174926 BU151499 AL137990 
AI804543 AW614120 BE910031 BU845205 AA341047 AI338546 AK096207 BP872238 

GeneLoc Exon Structure

5/6 Alternative Splicing Database (ASD) splice patterns (SP) for TMEM136 (see all 6)    About this scheme

ExUns: 1a · 1b · 1c ^ 2a · 2b · 2c · 2d ^ 3a · 3b · 3c · 3d ^ 4a · 4b
SP1:                                                  -     -     -               
SP2:                    -                                                         
SP3:                    -     -     -                                             
SP4:                                                                              
SP5:                    -     -     -     -                                       


ECgene alternative splicing isoforms for TMEM136

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

TMEM136 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: GGAACCAGGT
TMEM136 Expression
About this image


See TMEM136 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for TMEM136

SOURCE GeneReport for Unigene cluster: Hs.643516
    SABiosciences Custom PCR Arrays for TMEM136
Primer
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In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TMEM136

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of chordates.

Orthologs for TMEM136 gene from 4/11 species (see all 11)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Tmem1361 , 5 transmembrane protein 1361, 5 88.84(n)1
92.65(a)1
  9 (24.20 cM)5
2353001  NM_001034863.31  NP_001030035.11 
 431086535 
chicken
(Gallus gallus)
Aves LOC1008578451 transmembrane protein 136-like 70.88(n)
72.24(a)
  100857845  XM_003642590.1  XP_003642638.1 
lizard
(Anolis carolinensis)
Reptilia TMEM1366
Uncharacterized protein
67(a)
1 ↔ 1
LGa(1388888-1395010)
zebrafish
(Danio rerio)
Actinopterygii tmem136b1 transmembrane protein 136b 64.57(n)
61.43(a)
  436974  NM_001002701.1  NP_001002701.1 


ENSEMBL Gene Tree for TMEM136 (if available)
TreeFam Gene Tree for TMEM136 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
  --

(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

10/261 SNPs in TMEM136 are shown (see all 261)    About this table     
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 11 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1453688071,2
--120193885(+) CCCAGA/GATTTC 7 -- us2k10--------
rs1168499291,2
F--120193944(+) GTGGCC/TAAAGA 7 -- us2k11Minor allele frequency- T:0.03EA 120
rs127992991,2
C,F--120193956(+) ACATAC/TATCAA 7 -- us2k19Minor allele frequency- T:0.21NA CSA WA EA 370
rs1845340341,2
--120193964(+) CAACAA/GAATTT 7 -- us2k10--------
rs127994801,2
C,F--120194024(+) AAGGCC/TCAATA 7 -- us2k113Minor allele frequency- T:0.19NA EA CSA WA 732
rs1168813611,2
F--120194068(+) TACCCC/TCTCAG 7 -- us2k11Minor allele frequency- T:0.02NA 120
rs1894804011,2
--120194092(+) GAAGGC/TTTTAG 7 -- us2k10--------
rs3773537141,2
C--120194124(+) GATGGC/TGCAAG 7 -- us2k10--------
rs1487691871,2
--120194143(+) TCCAGA/GTTCAG 7 -- us2k10--------
rs360382331,2
C--120194188(+) GGGAA-/GAGGGT 7 -- us2k10--------

HapMap Linkage Disequilibrium report for TMEM136 (120195838 - 120204391 bp)

Structural Variations
     Database of Genomic Variants (DGV) 4 variations for TMEM136:    About this table     
Variant IDTypeSubtypePubMed ID
esv2549681CNV Deletion19546169
esv2533688CNV Deletion19546169
esv2457390CNV Insertion19546169
esv1582263CNV Insertion17803354

SABiosciences Cancer Mutation PCR Assays
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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section
  --

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
About This Section

PubMed articles for TMEM136 gene integrated from 9 sources:
(articles sorted by number of sources associating them with TMEM136)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1, 3 Strausberg R.L....Marra M.A. (2002)
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (2006)
  4. Human chromosome 11 DNA sequence and analysis including novel gene identification. (PubMed id 16554811)2 Taylor T.D....Sakaki Y. (2006)
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section
 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section
Entrez Gene: 219902 HGNC: 28280 AceView: POU2F3andMGC17839 Ensembl:ENSG00000181264 euGenes: HUgn219902
ECgene: TMEM136 H-InvDB: TMEM136

(According to HUGE)
About This Section
  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
NameDescription
PharmGKB entry for TMEM136 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
About This Section
Patent Information for TMEM136 gene:
Search GeneIP for patents involving TMEM136

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
About This Section

 
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GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 3 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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transforming growth factor, beta 1
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