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Aliases for TMEM135 Gene

Aliases for TMEM135 Gene

  • Transmembrane Protein 135 2 3 5
  • Peroxisomal Membrane Protein 52 3 4
  • PMP52 3 4

External Ids for TMEM135 Gene

Previous GeneCards Identifiers for TMEM135 Gene

  • GC11P086427
  • GC11P086749
  • GC11P083035

Summaries for TMEM135 Gene

GeneCards Summary for TMEM135 Gene

TMEM135 (Transmembrane Protein 135) is a Protein Coding gene.

UniProtKB/Swiss-Prot for TMEM135 Gene

  • May be involved in peroxisome organization.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMEM135 Gene

Genomics for TMEM135 Gene

Regulatory Elements for TMEM135 Gene

Enhancers for TMEM135 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F086937 1.3 Ensembl ENCODE 5.3 -97.3 -97260 5.5 HDGF ATF1 MLX ARID4B ZNF48 BRCA1 YY1 ELK1 GATA2 SP5 CCDC81 LOC100506368 ENSG00000255471 TMEM135 FZD4
GH11F087037 1.1 ENCODE 5.8 +0.1 87 3.1 HDGF PKNOX1 CREB3L1 MLX ARID4B SIN3A DMAP1 YY1 DEK ZNF263 TMEM135 XIAPP2
GH11F087030 1.2 Ensembl ENCODE 4.9 -7.0 -7044 0.4 ATF1 GATA2 FOS REST CREB3 NFIL3 MIER3 SMARCA4 NBN KDM1A TMEM135 HNRNPCP8 LOC105369422
GH11F087028 1 ENCODE 4.9 -8.8 -8756 1.4 ATF1 ARID4B FEZF1 DMAP1 ZNF48 FOS DEK SP5 JUNB KAT8 LOC100289518 TMEM135 ME3 HNRNPCP8 LOC105369422
GH11F087081 0.9 Ensembl ENCODE 5.1 +43.8 43796 0.8 SOX13 CBX2 ASH2L YBX1 RBBP5 TARDBP NBN MLLT1 IRF1 TMEM135 XIAPP2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TMEM135 on UCSC Golden Path with GeneCards custom track

Promoters for TMEM135 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000111077 756 3201 HDGF PKNOX1 MLX ARID4B SIN3A YY1 DEK ZNF263 SP3 SP5

Genomic Location for TMEM135 Gene

Chromosome:
11
Start:
87,037,844 bp from pter
End:
87,328,834 bp from pter
Size:
290,991 bases
Orientation:
Plus strand

Genomic View for TMEM135 Gene

Genes around TMEM135 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMEM135 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMEM135 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMEM135 Gene

Proteins for TMEM135 Gene

  • Protein details for TMEM135 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q86UB9-TM135_HUMAN
    Recommended name:
    Transmembrane protein 135
    Protein Accession:
    Q86UB9
    Secondary Accessions:
    • Q6AW91
    • Q8ND01
    • Q9H6M3

    Protein attributes for TMEM135 Gene

    Size:
    458 amino acids
    Molecular mass:
    52291 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAB15233.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

    Alternative splice isoforms for TMEM135 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TMEM135 Gene

Post-translational modifications for TMEM135 Gene

  • Ubiquitination at Lys 433
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for TMEM135 Gene

Domains & Families for TMEM135 Gene

Protein Domains for TMEM135 Gene

Suggested Antigen Peptide Sequences for TMEM135 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TMEM135: view

No data available for Gene Families and UniProtKB/Swiss-Prot for TMEM135 Gene

Function for TMEM135 Gene

Molecular function for TMEM135 Gene

UniProtKB/Swiss-Prot Function:
May be involved in peroxisome organization.
genes like me logo Genes that share phenotypes with TMEM135: view

Animal Model Products

Inhibitory RNA Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for TMEM135 Gene

Localization for TMEM135 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TMEM135 Gene

Membrane; Multi-pass membrane protein. Peroxisome.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for TMEM135 gene
Compartment Confidence
peroxisome 5
mitochondrion 4
nucleus 2
cytosol 2
plasma membrane 1
endoplasmic reticulum 1
golgi apparatus 1

Gene Ontology (GO) - Cellular Components for TMEM135 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005739 mitochondrion IEA --
GO:0005777 peroxisome ISS,IBA --
GO:0005811 lipid particle IEA --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with TMEM135: view

Pathways & Interactions for TMEM135 Gene

SuperPathways for TMEM135 Gene

No Data Available

Interacting Proteins for TMEM135 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000306344%0d%0a9606.ENSP00000344818%0d%0a
Selected Interacting proteins: ENSP00000306344 Q86UB9-TM135_HUMAN for TMEM135 Gene via STRING IID

Gene Ontology (GO) - Biological Process for TMEM135 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007031 peroxisome organization IEA,ISS --
GO:0009409 response to cold IEA --
GO:0032094 response to food IEA --
genes like me logo Genes that share ontologies with TMEM135: view

No data available for Pathways by source and SIGNOR curated interactions for TMEM135 Gene

Transcripts for TMEM135 Gene

Unigene Clusters for TMEM135 Gene

Transmembrane protein 135:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TMEM135 Gene

ExUns: 1 ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15a · 15b
SP1:
SP2: -

Relevant External Links for TMEM135 Gene

GeneLoc Exon Structure for
TMEM135
ECgene alternative splicing isoforms for
TMEM135

Expression for TMEM135 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TMEM135 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for TMEM135 Gene

This gene is overexpressed in Liver (42.8) and Testis (8.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for TMEM135 Gene



Protein tissue co-expression partners for TMEM135 Gene

NURSA nuclear receptor signaling pathways regulating expression of TMEM135 Gene:

TMEM135

SOURCE GeneReport for Unigene cluster for TMEM135 Gene:

Hs.188591
genes like me logo Genes that share expression patterns with TMEM135: view

Primer Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for TMEM135 Gene

Orthologs for TMEM135 Gene

This gene was present in the common ancestor of animals.

Orthologs for TMEM135 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TMEM135 34 35
  • 99.78 (n)
dog
(Canis familiaris)
Mammalia TMEM135 34 35
  • 93.74 (n)
cow
(Bos Taurus)
Mammalia TMEM135 34 35
  • 93.38 (n)
oppossum
(Monodelphis domestica)
Mammalia TMEM135 35
  • 93 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TMEM135 35
  • 92 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Tmem135 34 16 35
  • 86.97 (n)
rat
(Rattus norvegicus)
Mammalia Tmem135 34
  • 86.61 (n)
chicken
(Gallus gallus)
Aves TMEM135 34 35
  • 80.06 (n)
lizard
(Anolis carolinensis)
Reptilia TMEM135 35
  • 85 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia tmem135 34
  • 75.7 (n)
zebrafish
(Danio rerio)
Actinopterygii tmem135 34 35
  • 69.07 (n)
fruit fly
(Drosophila melanogaster)
Insecta CG11737 34 35
  • 43.93 (n)
CG31259 35
  • 30 (a)
OneToMany
CG31454 35
  • 29 (a)
OneToMany
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP007085 34
  • 42.56 (n)
worm
(Caenorhabditis elegans)
Secernentea tmem-135 34 35
  • 46.17 (n)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.3886 35
  • 35 (a)
OneToOne
Species where no ortholog for TMEM135 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for TMEM135 Gene

ENSEMBL:
Gene Tree for TMEM135 (if available)
TreeFam:
Gene Tree for TMEM135 (if available)

Paralogs for TMEM135 Gene

No data available for Paralogs for TMEM135 Gene

Variants for TMEM135 Gene

Sequence variations from dbSNP and Humsavar for TMEM135 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs10047408 -- 87,314,414(+) ATGAC(A/G)TAATA intron-variant
rs1011301 -- 87,278,092(+) CCTGT(A/C)TAGAA intron-variant
rs10128621 -- 87,268,090(+) ATTAA(A/G)TACCT intron-variant
rs10160646 -- 87,246,220(+) AGATC(C/T)GCTGT intron-variant
rs10160647 -- 87,246,113(+) TGAAG(C/G)TTAGT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TMEM135 Gene

Variant ID Type Subtype PubMed ID
esv3627116 CNV loss 21293372
esv3627117 CNV gain 21293372
esv3627119 CNV loss 21293372
esv3627122 CNV loss 21293372
esv999908 CNV deletion 20482838
nsv1042017 CNV gain 25217958
nsv1113417 CNV deletion 24896259
nsv1116678 CNV tandem duplication 24896259
nsv1138059 CNV deletion 24896259
nsv1149922 CNV duplication 26484159
nsv420 CNV deletion 18451855
nsv468776 CNV loss 19166990
nsv478956 CNV novel sequence insertion 20440878
nsv518332 CNV loss 19592680
nsv521810 CNV loss 19592680
nsv525787 CNV loss 19592680
nsv528940 CNV loss 19592680
nsv555706 CNV loss 21841781
nsv555707 CNV loss 21841781
nsv555708 CNV loss 21841781
esv3627115 CNV loss 21293372
esv3627114 CNV gain 21293372
esv3627113 CNV loss 21293372
esv3627099 CNV gain 21293372
esv3153107 CNV deletion 24192839
esv2762929 CNV loss 21179565
esv2744865 CNV deletion 23290073
esv2744864 CNV deletion 23290073
esv2744862 CNV deletion 23290073
esv2744861 CNV deletion 23290073
esv2744860 CNV deletion 23290073
esv2744859 CNV deletion 23290073
esv2656806 CNV deletion 23128226
esv2631282 CNV deletion 19546169
esv2429813 CNV deletion 19546169
esv21627 CNV loss 19812545
esv1070532 CNV deletion 17803354
dgv2057n54 CNV loss 21841781
dgv2056n54 CNV loss 21841781

Variation tolerance for TMEM135 Gene

Residual Variation Intolerance Score: 59.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.43; 63.94% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TMEM135 Gene

Human Gene Mutation Database (HGMD)
TMEM135
SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMEM135

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TMEM135 Gene

Disorders for TMEM135 Gene

Relevant External Links for TMEM135

Genetic Association Database (GAD)
TMEM135
Human Genome Epidemiology (HuGE) Navigator
TMEM135
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TMEM135

No disorders were found for TMEM135 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TMEM135 Gene

Publications for TMEM135 Gene

  1. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 46 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  3. Genetic determinants of heel bone properties: genome-wide association meta-analysis and replication in the GEFOS/GENOMOS consortium. (PMID: 24430505) Moayyeri A. … Kaptoge S.K. (Hum. Mol. Genet. 2014) 3 64
  4. Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis. (PMID: 19010793) Baranzini S.E. … Oksenberg J.R. (Hum. Mol. Genet. 2009) 46 64
  5. Comparative transcriptomics of human multipotent stem cells during adipogenesis and osteoblastogenesis. (PMID: 18637193) Scheideler M. … Trajanoski Z. (BMC Genomics 2008) 4 64

Products for TMEM135 Gene

Sources for TMEM135 Gene

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