TMEM108 Gene
protein-coding GIFtS : 46
GCID: GC03 P132757
transmembrane protein 108
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Aliasesfor TMEM108 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Transmembrane Protein 108 1 2 CT1241 2 MGC30401 Cancer/Testis Antigen 1242 KIAA16903
Export aliases for TMEM108 gene to outside databases Previous GC identifers: GC03P134240 GC03P130137
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Summariesfor TMEM108 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section --
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Genomic Viewsfor TMEM108 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000003.11 NC_018914.1 NT_005612.16 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the TMEM108 gene promoter: Egr-3 Tal-1 NF-kappaB HNF-1A C/EBPalpha E47 Evi-1 AREB6 HNF-1 NF-kappaB1 Other transcription factors Search SABiosciences Chromatin IP Primers for TMEM108 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat TMEM108
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 3q21 Ensembl cytogenetic band: 3q22.1 HGNC cytogenetic band: 3q21 TMEM108 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 3 GeneLoc Exon Structure
GeneLoc location for GC03P132757: view genomic region
(about GC identifiers )
Start:
132,757,171 bp from pter
End:
133,116,636 bp from pter
Size:
359,466 bases
Orientation:
plus strand
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Proteinsfor TMEM108 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: TM108_HUMAN, Q6UXF1 (See
protein sequence )Recommended Name: Transmembrane protein 108 precursor Size : 575 amino acids; 59948 Da
Subcellular location : Membrane; Single-pass type I membrane protein (Potential)
Secondary accessions : D3DNC9 Q9BQH1 Q9BW81 Q9C0H3Alternative splicing : 2 isoforms : Q6UXF1-1 Q6UXF1-2 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for TMEM108: NX_Q6UXF1 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q6UXF1 TMEM108 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins (2 alternative transcripts):
NP_001129941.1 NP_076432.1 ENSEMBL proteins: ENSP00000324651 ENSP00000376838 ENSP00000422072 ENSP00000427447 ENSP00000426301 ENSP00000422196 ENSP00000424897 ENSP00000423338 ENSP00000421486 Human Recombinant Protein Products: Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005575 cellular_component
ND -- GO:0016021 integral to membrane
IEA --
TMEM108 for ontologies About GeneDecksing TMEM108 Antibody Products: Assay Products for TMEM108:
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Protein
Domains / Familiesfor TMEM108 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section ProtoNet protein and cluster: Q6UXF1
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Functionfor TMEM108 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for TMEM108 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for TMEM108 (see all 2 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 2 ): TMEM108 (NM_023943 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for TMEM108 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat TMEM108
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TMEM108
Gene Ontology (GO): 1 molecular function term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0003674 molecular_function
ND --
TMEM108 for ontologies About GeneDecksing Animal Models: Mouse knock-out Tmem108 tm1Lex for TMEM108 1 MGI phenotypic allele for Tmem108 (no phenotypes)
TMEM108 for phenotypes About GeneDecksing
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Pathways & Interactionsfor TMEM108 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for TMEM108 STRING Interaction
Network Preview (showing 2 interactants - click image to see more details)5 Interacting proteins for TMEM108 (Q6UXF1 2 , 3 ENSP00000324651 4 ) via UniProtKB, MINT, STRING , and/or I2D About this table Gene Ontology (GO): 1 biological process term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0008150 biological_process
ND --
TMEM108 for ontologies About GeneDecksing
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Drugs & Compoundsfor TMEM108 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for TMEM108 Search CenterWatch for drugs/clinical trials and news about TMEM108 / TM108
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Transcriptsfor TMEM108 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for TMEM108 gene (2 alternative transcripts): NM_001136469.1 NM_023943.2 Unigene Cluster for TMEM108:
Transmembrane protein 108 Hs.191616 [show with all ESTs ] Unigene Representative Sequence: AB051477 11 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000514529 ENST00000321871 (uc003epi.3 uc003eph.3 ) ENST00000393130 ENST00000514894 ENST00000512662 ENST00000512137 ENST00000511555 ENST00000508711 (uc003epk.3 )ENST00000515826 (uc003epj.1 ) ENST00000510183 ENST00000511388 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for TMEM108 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for TMEM108 (see all 2 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 2 ): TMEM108 (NM_023943 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for TMEM108 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat TMEM108
Additional cDNA sequence: AB051477.1 AK095050.1 AL136578.1 AY358381.1 BC000568.2
7 DOTS entries : DT.210689 DT.92426653
DT.100688001 DT.95235418 DT.100721277 DT.307874 DT.92426658 24/102 AceView cDNA sequences (see all 102 ):
BU187890 BG721456 BM466403 BC000568 NM_023943 BF727434 BM011053 CR609282 BM508041 BM511570 AL136578 CR618323 AI634513 AI348310 BM729904 BI769217 AL521386 CD358225 AI377405 AK095050 BM667108 BF313692 AW418761 BQ638156 GeneLoc Exon Structure
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Expression for TMEM108 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section TMEM108 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: TATATATAAA
About this image TMEM108 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See TMEM108 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for TMEM108 SOURCE GeneReport for Unigene cluster: Hs.191616 SABiosciences Custom PCR Arrays for TMEM108 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for TMEM108Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat TMEM108 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat TMEM108 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat TMEM108 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TMEM108
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Orthologsfor TMEM108 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of chordates.
Orthologs for TMEM108 gene from 4/9 species (see all 9 ) About this table
ENSEMBL Gene Tree for TMEM108 (if available)TreeFam Gene Tree for TMEM108 (if available)
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Paralogsfor TMEM108 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section --
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Genomic Variantsfor TMEM108 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 3 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for TMEM108 (132757171 - 133007171 bp, first 250kb of TMEM108)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 9 variations for TMEM108 6 CNVs : 91566 2474 36069 79912 63595 91565 3 Indels : 60435 98454 11211
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing TMEM108
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Disorders
/ Diseasesfor TMEM108 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section TMEM108 for disorders About MalaCards
TMEM108 for disorders About GeneDecksing Human Genome Epidemiology (HuGE) Navigator: TMEM108 (3 documents) Export disorders for TMEM108 gene to outside databases
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Publicationsfor TMEM108 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for TMEM108 gene, integrated from 9 sources (see all 12 ): (articles sorted by number of sources associating them with TMEM108) Utopia : connect your pdf to the dynamic world of online information
Prediction of the coding sequences of unidentified human genes. XIX. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PubMed id 11214970) 1 , 2 , 3 Nagase T.... Ohara O. (2000) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309) 1 , 2 Clark H.F.... Gray A.M. (2003) Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PubMed id 11230166) 1 , 2 Wiemann S.... Poustka A. (2001) A genome-wide meta-analysis of genetic variants associ ated with allergic rhinitis and grass sensitization and their interaction with b irth order. (PubMed id 22036096) 1 Ramasamy A....Jarvis D.L. (2011) A directed protein interaction network for investigat ing intracellular signal transduction. (PubMed id 21900206) 1 Vinayagam A....Wanker E.E. (2011) Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614) 1 Rose J.E....Uhl G.R. (2010) Thirty new loci for age at menarche identified by a m eta-analysis of genome-wide association studies. (PubMed id 21102462) 1 Elks C.E....Murray A. (2010) Molecular genetics of successful smoking cessation: convergent genome-wide association study results. (PubMed id 18519826) 1 Uhl G.R....Lerman C. (2008) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 Ota T.... Sugano S. (2004)
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External Searches for TMEM108 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing TMEM108 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing TMEM108 gene
(According to HUGE )
About This Section
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Specialized Databases showing TMEM108 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for TMEM108 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for TMEM108 gene: Search GeneIP for patents involving TMEM108 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor TMEM108 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies Browse OriGene shRNA RFPs OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for TMEM108 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for TMEM108 Browse OriGene Protein Over-expression Lysates Browse OriGene Fluorogenic Cell Assay Kits Browse OriGene siRNAs OriGene 3'-UTR Clone for TMEM108 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for TMEM108 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for TMEM108 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for TMEM108 OriGene Custom Protein Services for TMEM108 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat TMEM108 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing TMEM108 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat TMEM108 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat TMEM108 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat TMEM108 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat TMEM108
Search Tocris compounds for TMEM108
TMEM108 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TMEM108
ThermoFisher Antibodies for TMEM108
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat TMEM108
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Aliases for TMEM108
Databases for TMEM108
Disorders / Diseases for TMEM108
Domains / Families for TMEM108
Drugs / Compounds for TMEM108
Expression for TMEM108
Function for TMEM108
Genomic Views for TMEM108
Intellectual Property for TMEM108
Orthologs for TMEM108
Paralogs for TMEM108
Pathways / Interactions for TMEM108
Products for TMEM108
Proteins for TMEM108
Publications for TMEM108
Search Box for TMEM108
Summaries for TMEM108
Transcripts for TMEM108
Variants for TMEM108
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