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Aliases for TMEM107 Gene

Aliases for TMEM107 Gene

  • Transmembrane Protein 107 2 3 5
  • GRVS638 3
  • PRO1268 3

External Ids for TMEM107 Gene

Previous GeneCards Identifiers for TMEM107 Gene

  • GC17M008027
  • GC17M008028
  • GC17M008077
  • GC17M008080
  • GC17M008082
  • GC17M008085
  • GC17M008113
  • GC17M008187
  • GC17M008233
  • GC17M008268
  • GC17M008313

Summaries for TMEM107 Gene

GeneCards Summary for TMEM107 Gene

TMEM107 (Transmembrane Protein 107) is a Protein Coding gene. Diseases associated with TMEM107 include Meckel Syndrome 1.

UniProtKB/Swiss-Prot for TMEM107 Gene

  • Plays a role in cilia formation and embryonic patterning. Requires for normal Sonic hedgehog (Shh) signaling in the neural tube and acts in combination with GLI2 and GLI3 to pattern ventral and intermediate neuronal cell types (By similarity).

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMEM107 Gene

Genomics for TMEM107 Gene

Regulatory Elements for TMEM107 Gene

Enhancers for TMEM107 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association

Enhancers around TMEM107 on UCSC Golden Path with GeneCards custom track

Promoters for TMEM107 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around TMEM107 on UCSC Golden Path with GeneCards custom track

Genomic Location for TMEM107 Gene

Chromosome:
17
Start:
8,172,978 bp from pter
End:
8,176,399 bp from pter
Size:
3,422 bases
Orientation:
Minus strand

Genomic View for TMEM107 Gene

Genes around TMEM107 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMEM107 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMEM107 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMEM107 Gene

Proteins for TMEM107 Gene

  • Protein details for TMEM107 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6UX40-TM107_HUMAN
    Recommended name:
    Transmembrane protein 107
    Protein Accession:
    Q6UX40
    Secondary Accessions:
    • A0PJV7
    • Q6NSE3
    • Q6ZRX9
    • Q96T82

    Protein attributes for TMEM107 Gene

    Size:
    140 amino acids
    Molecular mass:
    15503 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAK38512.1; Type=Frameshift; Positions=63, 82; Evidence={ECO:0000305};

    Alternative splice isoforms for TMEM107 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TMEM107 Gene

Post-translational modifications for TMEM107 Gene

Other Protein References for TMEM107 Gene

No data available for DME Specific Peptides for TMEM107 Gene

Domains & Families for TMEM107 Gene

Protein Domains for TMEM107 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for TMEM107 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TMEM107: view

No data available for Gene Families and UniProtKB/Swiss-Prot for TMEM107 Gene

Function for TMEM107 Gene

Molecular function for TMEM107 Gene

UniProtKB/Swiss-Prot Function:
Plays a role in cilia formation and embryonic patterning. Requires for normal Sonic hedgehog (Shh) signaling in the neural tube and acts in combination with GLI2 and GLI3 to pattern ventral and intermediate neuronal cell types (By similarity).

Gene Ontology (GO) - Molecular Function for TMEM107 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
genes like me logo Genes that share ontologies with TMEM107: view
genes like me logo Genes that share phenotypes with TMEM107: view

Animal Models for TMEM107 Gene

MGI Knock Outs for TMEM107:

Animal Model Products

  • Taconic Biosciences Mouse Models for TMEM107

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for TMEM107 Gene

Localization for TMEM107 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TMEM107 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TMEM107 Gene COMPARTMENTS Subcellular localization image for TMEM107 gene
Compartment Confidence
plasma membrane 3
extracellular 1

Gene Ontology (GO) - Cellular Components for TMEM107 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
GO:0016021 integral component of membrane IEA --
GO:0035869 ciliary transition zone IDA 26595381
genes like me logo Genes that share ontologies with TMEM107: view

Pathways & Interactions for TMEM107 Gene

SuperPathways for TMEM107 Gene

No Data Available

Interacting Proteins for TMEM107 Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000314116%0d%0a9606.ENSP00000328182%0d%0a9606.ENSP00000328182%0d%0a
Selected Interacting proteins: ENSP00000314116 Q6UX40-TM107_HUMAN for TMEM107 Gene via STRING IID

Gene Ontology (GO) - Biological Process for TMEM107 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
GO:0021532 neural tube patterning IEA --
GO:0035058 nonmotile primary cilium assembly IEA,IMP 26595381
GO:0042384 cilium assembly IEA,ISS --
GO:0042733 embryonic digit morphogenesis IEA --
genes like me logo Genes that share ontologies with TMEM107: view

No data available for Pathways by source and SIGNOR curated interactions for TMEM107 Gene

Drugs & Compounds for TMEM107 Gene

No Compound Related Data Available

Transcripts for TMEM107 Gene

Unigene Clusters for TMEM107 Gene

Transmembrane protein 107:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TMEM107 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3a · 3b · 3c ^ 4a · 4b · 4c ^ 5a · 5b · 5c · 5d · 5e
SP1: -
SP2: - -
SP3: - -
SP4: - - -
SP5: -
SP6: -
SP7: -
SP8: - - - - - - -

Relevant External Links for TMEM107 Gene

GeneLoc Exon Structure for
TMEM107
ECgene alternative splicing isoforms for
TMEM107

Expression for TMEM107 Gene

mRNA expression in normal human tissues for TMEM107 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for TMEM107 Gene

This gene is overexpressed in Retina (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for TMEM107 Gene



Protein tissue co-expression partners for TMEM107 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of TMEM107 Gene:

TMEM107

SOURCE GeneReport for Unigene cluster for TMEM107 Gene:

Hs.513933
genes like me logo Genes that share expression patterns with TMEM107: view

Primer Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for TMEM107 Gene

Orthologs for TMEM107 Gene

This gene was present in the common ancestor of chordates.

Orthologs for TMEM107 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia TMEM107 34
  • 92.14 (n)
  • 91.43 (a)
TMEM107 35
  • 91 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TMEM107 34
  • 90.87 (n)
  • 94.52 (a)
TMEM107 35
  • 95 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Tmem107 34
  • 87.14 (n)
  • 88.57 (a)
Tmem107 16
Tmem107 35
  • 76 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia TMEM107 34
  • 100 (n)
  • 100 (a)
TMEM107 35
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Tmem107 34
  • 86.67 (n)
  • 88.57 (a)
platypus
(Ornithorhynchus anatinus)
Mammalia TMEM107 35
  • 78 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia TMEM107 35
  • 68 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC101731170 34
  • 66.67 (n)
  • 67.63 (a)
African clawed frog
(Xenopus laevis)
Amphibia Xl.34137 34
zebrafish
(Danio rerio)
Actinopterygii tmem107l 34
  • 62.83 (n)
  • 63.31 (a)
tmem107l 35
  • 59 (a)
OneToOne
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.10133 34
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 51 (a)
OneToOne
Species where no ortholog for TMEM107 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for TMEM107 Gene

ENSEMBL:
Gene Tree for TMEM107 (if available)
TreeFam:
Gene Tree for TMEM107 (if available)

Paralogs for TMEM107 Gene

No data available for Paralogs for TMEM107 Gene

Variants for TMEM107 Gene

Sequence variations from dbSNP and Humsavar for TMEM107 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs527409449 -- 8,172,596(+) CTAGC(A/T)CTTTA downstream-variant-500B
rs549503416 -- 8,172,548(+) AGTGC(-/AA)AAGAG downstream-variant-500B
rs547622154 -- 8,172,551(+) GCAAA(A/G)GAGGG downstream-variant-500B
rs566198287 -- 8,172,571(+) AAACG(C/T)GGTGG downstream-variant-500B
rs777681798 -- 8,172,603(+) TTTAG(A/G)AGGCC downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for TMEM107 Gene

Variant ID Type Subtype PubMed ID
nsv1964 CNV insertion 18451855
nsv527475 CNV loss 19592680
nsv574336 CNV loss 21841781
nsv827879 CNV gain 20364138
nsv833352 CNV loss 17160897
nsv833353 CNV loss 17160897

Variation tolerance for TMEM107 Gene

Residual Variation Intolerance Score: 50.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.18; 3.97% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TMEM107 Gene

Human Gene Mutation Database (HGMD)
TMEM107
SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMEM107

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TMEM107 Gene

Disorders for TMEM107 Gene

MalaCards: The human disease database

(1) MalaCards diseases for TMEM107 Gene - From: DISEASES

Disorder Aliases PubMed IDs
meckel syndrome 1
  • meckel syndrome
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for TMEM107

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TMEM107
genes like me logo Genes that share disorders with TMEM107: view

No data available for UniProtKB/Swiss-Prot and Genatlas for TMEM107 Gene

Publications for TMEM107 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 65
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 65
  3. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark H.F. … Gray A.M. (Genome Res. 2003) 3 4 65
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 65
  5. TMEM107 recruits ciliopathy proteins to subdomains of the ciliary transition zone and causes JoubertA syndrome. (PMID: 26595381) Lambacher N.J. … Blacque O.E. (Nat. Cell Biol. 2016) 3 65

Products for TMEM107 Gene

Sources for TMEM107 Gene

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