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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

TMEM106B Gene

protein-coding   GIFtS: 46
GCID: GC07P012217

transmembrane protein 106B

 Explore 5 diseases affiliated with
TMEM106B via our new
 Human Malady Compendium 
Biological research products
for TMEM106B
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Transmembrane Protein 106B1 2
FLJ112731
MGC337271

External Ids:    HGNC: 224071   Entrez Gene: 546642   Ensembl: ENSG000001064607   OMIM: 6134135   UniProtKB: Q9NUM43   

Export aliases for TMEM106B gene to outside databases

Previous GC identifer: GC07P012025


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Gene Wiki entry for TMEM106B


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000007.13  NC_018918.1  NT_007819.17  NT_079592.2  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the TMEM106B gene promoter:
         ISGF-3   Tal-1beta   E4BP4   E47   NF-AT   NF-AT4   NF-AT2   NF-AT3   ITF-2   NF-AT1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidTMEM106B promoter sequence
   Search SABiosciences Chromatin IP Primers for TMEM106B

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat TMEM106B


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 7p21.3   Ensembl cytogenetic band:  7p21.3   HGNC cytogenetic band: 7p21.3

TMEM106B Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
TMEM106B gene location

GeneLoc information about chromosome 7         GeneLoc Exon Structure

GeneLoc location for GC07P012217:  view genomic region     (about GC identifiers)

Start:
12,250,848 bp from pter      End:
12,276,890 bp from pter
Size:
26,043 bases      Orientation:
plus strand

1 alternative location:
Chr7+,CRA_TCAG 12,304,117-12,330,178     

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: T106B_HUMAN, Q9NUM4 (See protein sequence)
Recommended Name: Transmembrane protein 106B  
Size: 274 amino acids; 31127 Da
Subcellular location: Late endosome membrane; Single-pass type II membrane protein. Lysosome membrane; Single-pass type
II membrane protein
Secondary accessions: A4D108 Q53FL9 Q8N4L0

Explore the universe of human proteins at neXtProt for TMEM106B: NX_Q9NUM4

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q9NUM4

  • TMEM106B Protein expression data from MOPED and PaxDb:    About this image 
    TMEM106B Protein Expression
    REFSEQ proteins (2 alternative transcripts): 
    NP_001127704.1  NP_060844.2  

    ENSEMBL proteins: 
     ENSP00000379902   ENSP00000391016   ENSP00000401302   ENSP00000379901   ENSP00000414810  
     ENSP00000391985  

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    Uscn Proteins for TMEM106B

    Gene Ontology (GO): 4 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005575cellular_component ND--
    GO:0005765lysosomal membrane IEA--
    GO:0016021integral to membrane IEA--
    GO:0031902late endosome membrane IEA--

    TMEM106B for ontologies           About GeneDecksing



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    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    TMEM106B for domains           About GeneDecksing

    1 InterPro domain/family:
     IPR009790 DUF1356_TMEM106

    Graphical View of Domain Structure for InterPro Entry Q9NUM4

    ProtoNet protein and cluster: Q9NUM4

    UniProtKB/Swiss-Prot: T106B_HUMAN, Q9NUM4
    Similarity: Belongs to the TMEM106 family


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

         Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003674molecular_function ND--
         
    TMEM106B for ontologies           About GeneDecksing


    Animal Models:
       inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for TMEM106B 

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    In Situ Assay
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TMEM106B


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for TMEM106B

    Gene Ontology (GO): 1 biological process term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0008150biological_process ND--

    TMEM106B for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for TMEM106B
    Search CenterWatch for drugs/clinical trials and news about TMEM106B / T106B 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, Sirion Biotech, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for TMEM106B gene (2 alternative transcripts): 
    NM_001134232.1  NM_018374.3  

    Unigene Cluster for TMEM106B:

    Transmembrane protein 106B
    Hs.396358  [show with all ESTs]
    Unigene Representative Sequence: NM_018374
    8 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000396668 ENST00000420833 ENST00000444443 ENST00000396667(uc011jxk.2 uc003ssh.3)
    ENST00000453686 ENST00000442107 ENST00000492762 ENST00000462754

    miRNA
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    8/69 QIAGEN miScript miRNA Assays for microRNAs that regulate TMEM106B (see all 69):
    hsa-miR-579 hsa-miR-323-3p hsa-miR-607 hsa-miR-485-3p hsa-miR-30d hsa-miR-371-5p hsa-miR-4275 hsa-miR-30a
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    Inhib. RNA
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    Browse for Gene Knock-down Tools from EMD Millipore
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    OriGene shRNA RFP: TMEM106B
    OriGene siRNA: TMEM106B
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    Clone
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    Additional cDNA sequence: 

    AK001834.1 AK002135.1 AK090805.1 AK223263.1 AK311651.1 BC028108.1 BC033901.2 BC039741.2 
    Z36806.1 

    12 DOTS entries:

    DT.114295  DT.100025181  DT.100025182  DT.92324152  DT.40114893  DT.100795422  DT.101973565  DT.92430192 
    DT.95365000  DT.97785316  DT.92058859  DT.99955238 

    24/244 AceView cDNA sequences (see all 244):

    CD653871 CF529047 BQ424563 AA719565 AI015782 N50372 N22544 AA730220 
    AA603809 BE218870 AA504163 BU160544 CK299671 AA128820 AL600186 AA730273 
    CB250427 BX327814 BM788784 BE048846 AA912824 BU607560 AU138150 AA304566 

    GeneLoc Exon Structure

    5/10 Alternative Splicing Database (ASD) splice patterns (SP) for TMEM106B (see all 10)    About this scheme

    ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3a · 3b ^ 4a · 4b ^ 5 ^ 6 ^ 7a · 7b ^ 8a · 8b ^ 9a · 9b ^ 10a · 10b ^ 11a · 11b · 11c · 11d
    SP1:                    -                       -     -           -                             -                 -                           
    SP2:                    -     -                 -     -           -                             -                 -                           
    SP3:                                            -     -           -                 -     -     -                 -                           
    SP4:                                                              -                             -           -     -                           
    SP5:                    -     -                 -     -                                                                                       


    ECgene alternative splicing isoforms for TMEM106B

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    TMEM106B expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: --
    TMEM106B Expression
    About this image
    See TMEM106B Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for TMEM106B

    SOURCE GeneReport for Unigene cluster: Hs.396358

    UniProtKB/Swiss-Prot: T106B_HUMAN, Q9NUM4
    Tissue specificity: Expressed in frontal cortex

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    In Situ
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of chordates.

    Orthologs for TMEM106B gene from 3/14 species (see all 14)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves TMEM106B1 transmembrane protein 106B 80.17(n)
    87.59(a)
      420586  NM_001012558.1  NP_001012576.1 
    lizard
    (Anolis carolinensis)
    Reptilia TMEM106B6
    --
    88(a)
    1 ↔ 1
    6(25623137-25626239)
    zebrafish
    (Danio rerio)
    Actinopterygii zgc640132 hypothetical protein MGC64013 78.07(n)   393333  BC053198.1 


    ENSEMBL Gene Tree for TMEM106B (if available)
    TreeFam Gene Tree for TMEM106B (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for TMEM106B gene
    TMEM106A2  TMEM106C2  
    5 SIMAP similar genes for TMEM106B using alignment to 5 protein entries:     T106B_HUMAN (see all proteins):
    MRPS28    TMEM106C    L3MBTL2    ETFA    TMEM106A

    TMEM106B for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/686 NCBI SNPs in TMEM106B are shown (see all 686    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 7 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1880829471,2
    --12248892(+) ATAACC/GCTTTG 2 -- us2k10--------
    rs1480605581,2
    --12248895(+) ACCCTC/TTGAGA 2 -- us2k10--------
    rs725822421,2
    C,F--12249139(+) TGTGCT/CATATG 2 -- us2k13Minor allele frequency- C:0.06WA NA EA 358
    rs1436863851,2
    --12249146(+) TATGGA/CCAGCA 2 -- us2k10--------
    rs1472027021,2
    --12249183(+) GAAAAC/TACTAA 2 -- us2k10--------
    rs1931025321,2
    --12249231(+) CACTTA/CAGAAT 2 -- us2k10--------
    rs1851296671,2
    --12249232(+) ACTTAA/GGAATA 2 -- us2k10--------
    rs789806031,2
    F--12249248(+) TATTAC/TATTAT 2 -- us2k12Minor allele frequency- T:0.11NA EA 240
    rs1900602081,2
    --12249336(+) TATATG/TTCTTT 2 -- us2k10--------
    rs783251541,2
    F--12249393(+) ATATGT/AGAATA 2 -- us2k11Minor allele frequency- A:0.07EA 120

    HapMap Linkage Disequilibrium report for TMEM106B (12250848 - 12276890 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 1 variation for TMEM106B
         1 Indel: 59377

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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    TMEM106B for disorders           About GeneDecksing

    OMIM gene information: 613413    OMIM disorders: --

    UniProtKB/Swiss-Prot: T106B_HUMAN, Q9NUM4
  • Note=TMEM106B genotype, when containing 3 particular single-nucleotide polymorphisms, is strongly correlated
  • with frontotemporal lobar degeneration with TAR DNA-binding protein (TDP-43) inclusions (FTLD-TDP). Frontotemporal
    lobar degeneration (FTLD) is the second most common cause of presenile dementia and 20% of patients with this
    neurodegenerative disease have autosomal dominant GRN mutations. Expression of TMEM106B associated with these
    polymorphisms is increased in frontal cortex of patients with FTLD-TDP compared to unaffected controls. Thus,
    increased TMEM106B expression in the brain may be linked to mechanisms of disease in FTLD-TDP and risk alleles confer
    genetic susceptibility by increasing gene expression

    5 diseases for TMEM106B:    About MalaCards
    amyotrophic lateral sclerosis    frontotemporal dementia    lateral sclerosis    neurodegenerative disease
    dementia

    1 disease from the University of Copenhagen DISEASES database for TMEM106B:
    Frontotemporal dementia
    Human Genome Epidemiology (HuGE) Navigator: TMEM106B (5 documents)

    Export disorders for TMEM106B gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for TMEM106B gene, integrated from 9 sources (see all 26):
    (articles sorted by number of sources associating them with TMEM106B)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Membrane orientation and subcellular localization of transmembrane protein 106B (TMEM106B), a major risk factor for frontotemporal lobar degeneration. (PubMed id 22511793)1, 2, 3 Lang C.M.... Haass C. (2012)
    2. Common variants at 7p21 are associated with frontotem poral lobar degeneration with TDP-43 inclusions. (PubMed id 20154673)1, 2, 3 Van Deerlin V.M....Lee V.M. (2010)
    3. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983)1, 2 Olsen J.V....Mann M. (2006)
    4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    6. Human chromosome 7: DNA sequence and biology. (PubMed id 12690205)1, 2 Scherer S.W.... Tsui L.-C. (2003)
    7. The DNA sequence of human chromosome 7. (PubMed id 12853948)1, 2 Hillier L.W.... Wilson R.K. (2003)
    8. Methods for quantification of in vivo changes in prote in ubiquitination following proteasome and deubiquitinase inhibition. (PubMed id 22505724)1 Udeshi N.D....Carr S.A. (2012)
    9. TMEM106B risk variant is implicated in the pathologic presentation of Alzheimer disease. (PubMed id 22855871)1 Rutherford N.J....Rademakers R. (2012)
    10. Genome-wide association study of Tourette's syndrome. (PubMed id 22889924)1 Scharf J.M.... D.L. (2012)

    (in PubMed, OMIM, and NCBI Bookshelf)
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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 54664 HGNC: 22407 AceView: FLJ11273 Ensembl:ENSG00000106460 euGenes: HUgn54664
    ECgene: TMEM106B H-InvDB: TMEM106B

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for TMEM106B Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for TMEM106B gene:
    Search GeneIP for patents involving TMEM106B

    GeneCards and IP:
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