TMEM100 Gene
protein-coding GIFtS : 43
GCID: GC17 M053796
transmembrane protein 100
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Aliasesfor TMEM100 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Transmembrane Protein 100 1 2 FLJ109701 FLJ378561
Export aliases for TMEM100 gene to outside databases Previous GC identifers: GC17M051152 GC17M049156
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Summariesfor TMEM100 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section --
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Genomic Viewsfor TMEM100 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000017.10 NC_018928.1 NT_010783.15 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the TMEM100 gene promoter: PPAR-alpha AML1a Nkx6-1 c-Myb Gfi-1 Ik-1 Other transcription factors Search SABiosciences Chromatin IP Primers for TMEM100 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat TMEM100
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 17q22 Ensembl cytogenetic band: 17q22 HGNC cytogenetic band: 17q23.1 TMEM100 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 17 GeneLoc Exon Structure
GeneLoc location for GC17M053796: view genomic region
(about GC identifiers )
Start:
53,796,988 bp from pter
End:
53,809,482 bp from pter
Size:
12,495 bases
Orientation:
minus strand
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Proteinsfor TMEM100 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: TM100_HUMAN, Q9NV29 (See
protein sequence )Recommended Name: Transmembrane protein 100 Size : 134 amino acids; 14386 Da
Subcellular location : Membrane; Multi-pass membrane protein (Potential)
Secondary accessions : D3DTY7 Q96FZ0Explore the universe of human proteins at neXtProt for TMEM100: NX_Q9NV29 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q9NV29 TMEM100 Protein expression data from MOPED and PaxDb : --REFSEQ proteins (2 alternative transcripts):
NP_001093110.1 NP_060756.2 ENSEMBL proteins: ENSP00000395328 ENSP00000465638 ENSP00000459290 Human Recombinant Protein Products: Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005575 cellular_component
ND -- GO:0016021 integral to membrane
IEA --
TMEM100 for ontologies About GeneDecksing TMEM100 Antibody Products: Assay Products for TMEM100:
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Protein
Domains / Familiesfor TMEM100 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section ProtoNet protein and cluster: Q9NV29
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Functionfor TMEM100 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for TMEM100 (see all 4 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for TMEM100 (see all 2 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 2 ): TMEM100 (NM_001099640 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for TMEM100 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat TMEM100
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TMEM100
Gene Ontology (GO): 1 molecular function term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0003674 molecular_function
ND --
TMEM100 for ontologies About GeneDecksing 1 GenomeRNAi human phenotype for TMEM100 :Animal Models: 7 MGI mutant phenotypes (inferred from 5 alleles ) (MGI details for Tmem100) :
TMEM100 for phenotypes About GeneDecksing
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Pathways & Interactionsfor TMEM100 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for TMEM100 1 Interacting protein for TMEM100 (Q9NV29 3 ) via UniProtKB, MINT, STRING, and/or I2D About this table Gene Ontology (GO): 1 biological process term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0008150 biological_process
ND --
TMEM100 for ontologies About GeneDecksing
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Drugs & Compoundsfor TMEM100 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for TMEM100 Search CenterWatch for drugs/clinical trials and news about TMEM100 / TM100
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Transcriptsfor TMEM100 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
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Primers from
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SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for TMEM100 gene (2 alternative transcripts): NM_001099640.1 NM_018286.2 Unigene Cluster for TMEM100:
Transmembrane protein 100 Hs.173233 [show with all ESTs ] Unigene Representative Sequence: NM_001099640 6 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000424486 (uc002iuj.4 ) ENST00000575734 ENST00000571679 ENST00000575685 ENST00000570586 ENST00000575806 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for TMEM100 (see all 4 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for TMEM100 (see all 2 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 2 ): TMEM100 (NM_001099640 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for TMEM100 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat TMEM100
Additional cDNA sequence: AK001832.1 AK095175.1 BC010128.2
4 DOTS entries : DT.211824 DT.100745691
DT.100745693 DT.40114207 24/95 AceView cDNA sequences (see all 95 ):
AA001732 BM985358 CR601559 NM_018286 AA922684 BU688213 BQ674815 BM973095 AA683497 CF594266 AK001832 BM974455 AL546340 CR607494 CF994364 BE315005 AA977654 AL044840 CB990126 BQ027747 AA775527 BQ889285 AI859171 CR596094 GeneLoc Exon Structure 5 Alternative Splicing Database (ASD) splice patterns (SP) for TMEM100 About this scheme ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b · 4c ^ 5 ^ 6a · 6b · 6c SP1 :       -   -     -   -         SP2 :         -     -           SP3 :       -   -               SP4 :             -   -         SP5 :             -   -        
ECgene alternative splicing isoforms for TMEM100
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Expression for TMEM100 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section TMEM100 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: GGAGTGCACA
About this image TMEM100 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table Genevestigator expression for TMEM100 SOURCE GeneReport for Unigene cluster: Hs.173233 SABiosciences Custom PCR Arrays for TMEM100 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for TMEM100Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat TMEM100 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat TMEM100 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat TMEM100 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TMEM100
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Orthologsfor TMEM100 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of chordates.
Orthologs for TMEM100 gene from 4/10 species (see all 10 ) About this table
ENSEMBL Gene Tree for TMEM100 (if available)TreeFam Gene Tree for TMEM100 (if available)
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Paralogsfor TMEM100 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section --
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Genomic Variantsfor TMEM100 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 17 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for TMEM100 (53796988 - 53809482 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for TMEM100: --
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing TMEM100
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Disorders
/ Diseasesfor TMEM100 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
TMEM100 for disorders About GeneDecksing 4 diseases for TMEM100 : About MalaCards hereditary hemorrhagic telangiectasia autism spectrum disorder intrahepatic cholangiocarcinoma cholangiocarcinoma Human Genome Epidemiology (HuGE) Navigator: TMEM100 (2 documents) Export disorders for TMEM100 gene to outside databases
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Publicationsfor TMEM100 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for TMEM100 gene integrated from 9 sources : (articles sorted by number of sources associating them with TMEM100) Utopia : connect your pdf to the dynamic world of online information
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 , 2 Ota T.... Sugano S. (2004) Association of lung adenocarcinoma clinical stage with gene expression pattern in noninvolved lung tissue. (PubMed id 22223368) 1 Frullanti E....Dragani T.A. (2012) Genome-wide association study of body height in Africa n Americans: the Women's Health Initiative SNP Health Association Resource (SHAR e). (PubMed id 22021425) 1 Carty C.L....Kooperberg C. (2012) Methods for quantification of in vivo changes in prote in ubiquitination following proteasome and deubiquitinase inhibition. (PubMed id 22505724) 1 Udeshi N.D....Carr S.A. (2012) A common variant in DRD3 receptor is associated with autism spectrum disorder. (PubMed id 19058789) 1 de Krom M....van Ree J.M. (2009) Identification of intrahepatic cholangiocarcinoma related genes by comparison with normal liver tissues using expressed sequence tags. (PubMed id 16712791) 1 Wang A.G....Kim N.S. (2006) Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560) 1 Kimura K.... Sugano S. (2006) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002)
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External Searches for TMEM100 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing TMEM100 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing TMEM100 gene
(According to HUGE )
About This Section --
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Specialized Databases showing TMEM100 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for TMEM100 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for TMEM100 gene: Search GeneIP for patents involving TMEM100 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor TMEM100 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
OriGene Antibodies for TMEM100 OriGene shRNA RFP for TMEM100 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for TMEM100 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for TMEM100 OriGene Protein Over-expression Lysate for TMEM100 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for TMEM100 OriGene 3'-UTR Clone for TMEM100 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for TMEM100 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for TMEM100 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for TMEM100 OriGene Custom Protein Services for TMEM100 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat TMEM100 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing TMEM100 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat TMEM100 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat TMEM100 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat TMEM100 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat TMEM100
Search Tocris compounds for TMEM100
TMEM100 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TMEM100
Search ThermoFisher Antibodies for TMEM100
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat TMEM100
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Intellectual Property for TMEM100
Orthologs for TMEM100
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Proteins for TMEM100
Publications for TMEM100
Search Box for TMEM100
Summaries for TMEM100
Transcripts for TMEM100
Variants for TMEM100
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