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Aliases for TMED7-TICAM2 Gene

Aliases for TMED7-TICAM2 Gene

  • TMED7-TICAM2 Readthrough 2 3

External Ids for TMED7-TICAM2 Gene

Summaries for TMED7-TICAM2 Gene

Entrez Gene Summary for TMED7-TICAM2 Gene

  • This locus represents naturally occurring read-through transcription between the neighboring transmembrane emp24 protein transport domain containing 7 (TMED7) and toll-like receptor adaptor molecule 2 (TICAM2) genes. Alternative splicing results in multiple transcript variants, one of which encodes a fusion protein that shares sequence identity with the products of each individual gene. This fusion product functions to negatively regulate the adaptor MyD88-independent toll-like receptor 4 pathway. [provided by RefSeq, Nov 2010]

GeneCards Summary for TMED7-TICAM2 Gene

TMED7-TICAM2 (TMED7-TICAM2 Readthrough) is a Protein Coding gene. Among its related pathways are Toll-like receptor signaling pathway and Interleukin-1 signaling. An important paralog of this gene is TMED3.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMED7-TICAM2 Gene

Genomics for TMED7-TICAM2 Gene

Genomic Location for TMED7-TICAM2 Gene

Start:
115,578,642 bp from pter
End:
115,626,179 bp from pter
Size:
47,538 bases
Orientation:
Minus strand

Genomic View for TMED7-TICAM2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TMED7-TICAM2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMED7-TICAM2 Gene

No data available for Regulatory Elements for TMED7-TICAM2 Gene

Proteins for TMED7-TICAM2 Gene

  • Protein details for TMED7-TICAM2 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0A6YYA0-A0A0A6YYA0
    Recommended name:
    Protein TMED7-TICAM2
    Protein Accession:
    A0A0A6YYA0
    Secondary Accessions:

    Protein attributes for TMED7-TICAM2 Gene

    Size:
    188 amino acids
    Molecular mass:
    21233 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TMED7-TICAM2 Gene

Proteomics data for TMED7-TICAM2 Gene at MOPED

Post-translational modifications for TMED7-TICAM2 Gene

  • Modification sites at PhosphoSitePlus

Other Protein References for TMED7-TICAM2 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for TMED7-TICAM2 Gene

Domains for TMED7-TICAM2 Gene

Protein Domains for TMED7-TICAM2 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for TMED7-TICAM2 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TMED7-TICAM2: view

No data available for Gene Families and UniProtKB/Swiss-Prot for TMED7-TICAM2 Gene

Function for TMED7-TICAM2 Gene

Gene Ontology (GO) - Molecular Function for TMED7-TICAM2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with TMED7-TICAM2: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TMED7-TICAM2 Gene

Localization for TMED7-TICAM2 Gene

Gene Ontology (GO) - Cellular Components for TMED7-TICAM2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane --
genes like me logo Genes that share ontologies with TMED7-TICAM2: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for TMED7-TICAM2 Gene

Pathways for TMED7-TICAM2 Gene

genes like me logo Genes that share pathways with TMED7-TICAM2: view

Pathways by source for TMED7-TICAM2 Gene

2 BioSystems pathways for TMED7-TICAM2 Gene

Interacting Proteins for TMED7-TICAM2 Gene

Gene Ontology (GO) - Biological Process for TMED7-TICAM2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006810 transport --
GO:0007165 signal transduction --
genes like me logo Genes that share ontologies with TMED7-TICAM2: view

Transcripts for TMED7-TICAM2 Gene

mRNA/cDNA for TMED7-TICAM2 Gene

(2) REFSEQ mRNAs :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TMED7-TICAM2 Gene

No ASD Table

Relevant External Links for TMED7-TICAM2 Gene

GeneLoc Exon Structure for
TMED7-TICAM2
ECgene alternative splicing isoforms for
TMED7-TICAM2

Expression for TMED7-TICAM2 Gene

mRNA expression in normal human tissues for TMED7-TICAM2 Gene

Integrated Proteomics: protein expression from PaxDb and MaxQB for TMED7-TICAM2 Gene

genes like me logo Genes that share expressions with TMED7-TICAM2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for TMED7-TICAM2 Gene

Orthologs for TMED7-TICAM2 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for TMED7-TICAM2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TICAM2 36
  • 93 (a)
OneToMany
cow
(Bos Taurus)
Mammalia TICAM2 36
  • 77 (a)
OneToMany
dog
(Canis familiaris)
Mammalia TMED7 36
  • 85 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Ticam2 36
  • 72 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 79 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 70 (a)
OneToMany
chicken
(Gallus gallus)
Aves -- 36
  • 76 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 40 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii tmed7 36
  • 69 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta p24-1 36
  • 43 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea F57B10.5 36
  • 49 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes EMP24 36
  • 21 (a)
OneToMany
ERP4 38
sea squirt
(Ciona savignyi)
Ascidiacea CSA.9127 36
  • 48 (a)
OneToMany
Species with no ortholog for TMED7-TICAM2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for TMED7-TICAM2 Gene

ENSEMBL:
Gene Tree for TMED7-TICAM2 (if available)
TreeFam:
Gene Tree for TMED7-TICAM2 (if available)

Paralogs for TMED7-TICAM2 Gene

Paralogs for TMED7-TICAM2 Gene

genes like me logo Genes that share paralogs with TMED7-TICAM2: view

Variants for TMED7-TICAM2 Gene

Structural Variations from Database of Genomic Variants (DGV) for TMED7-TICAM2 Gene

Variant ID Type Subtype PubMed ID
nsv830455 CNV Gain 17160897

Relevant External Links for TMED7-TICAM2 Gene

HapMap Linkage Disequilibrium report
TMED7-TICAM2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for TMED7-TICAM2 Gene

Disorders for TMED7-TICAM2 Gene

Relevant External Links for TMED7-TICAM2

Genetic Association Database (GAD)
TMED7-TICAM2
genes like me logo Genes that share disorders with TMED7-TICAM2: view

No data available for UniProtKB/Swiss-Prot for TMED7-TICAM2 Gene

Publications for TMED7-TICAM2 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. TIRP, a novel Toll/interleukin-1 receptor (TIR) domain-containing adapter protein involved in TIR signaling. (PMID: 12721283) Bin L.-H. … Shu H.-B. (J. Biol. Chem. 2003) 3
  3. Signal sequence and keyword trap in silico for selection of full- length human cDNAs encoding secretion or membrane proteins from oligo- capped cDNA libraries. (PMID: 16303743) Otsuki T. … Isogai T. (DNA Res. 2005) 3
  4. TAG, a splice variant of the adaptor TRAM, negatively regulates the adaptor MyD88-independent TLR4 pathway. (PMID: 19412184) Palsson-McDermott E.M. … O'Neill L.A. (Nat. Immunol. 2009) 3
  5. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T. … Taylor T.D. (PLoS ONE 2010) 3

Products for TMED7-TICAM2 Gene

Sources for TMED7-TICAM2 Gene

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