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Aliases for TMED6 Gene

Aliases for TMED6 Gene

  • Transmembrane P24 Trafficking Protein 6 2 3 5
  • Transmembrane Emp24 Protein Transport Domain Containing 6 2 3
  • P24 Family Protein Gamma-5 3 4
  • P24gamma5 3 4
  • Transmembrane Emp24 Domain-Containing Protein 6 3
  • PRO34237 3
  • SPLL9146 3
  • P24g5 3

External Ids for TMED6 Gene

Previous GeneCards Identifiers for TMED6 Gene

  • GC16M067935
  • GC16M069377
  • GC16M055254

Summaries for TMED6 Gene

GeneCards Summary for TMED6 Gene

TMED6 (Transmembrane P24 Trafficking Protein 6) is a Protein Coding gene. An important paralog of this gene is ENSG00000259900.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMED6 Gene

Genomics for TMED6 Gene

Regulatory Elements for TMED6 Gene

Enhancers for TMED6 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16F069402 1.7 FANTOM5 Ensembl ENCODE 18.9 -56.3 -56258 11.7 PKNOX1 MLX ZFP64 ARID4B FEZF1 DMAP1 YY1 SLC30A9 ZNF302 FOS PDPR NONOP1 LOC400541 PDXDC2P NIP7 CHTF8 TMED6 NOB1 UTP4 NPIPB14P
GH16F069325 0.9 ENCODE 18 +24.9 24916 2.3 ELF3 ARID4B DMAP1 THRB ZNF48 RAD21 RARA YY1 ZNF121 SLC30A9 UTP4 TMED6 NIP7 CHTF8 PIR53878 PIR46379
GH16F069379 0.8 ENCODE 18.7 -29.7 -29688 3.3 SOX13 SAP130 TAL1 JUN ARID4B ZNF384 ZNF48 RARA ZNF664 NCOR1 NIP7 TMED6 CYB5B WWP2 ENSG00000252443 GC16M069442 PIR63038
GH16F069274 1.3 Ensembl ENCODE 9.5 +75.3 75325 3.6 PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 YY1 SLC30A9 CBX5 ZNF143 ZNF207 UTP4 SNTB2 TMED6 CLEC18C LOC100421641 PIR50286
GH16F069217 1.1 Ensembl ENCODE 10.8 +134.2 134166 1.0 HDAC1 GATA2 FOS ZEB2 ZNF217 MAFF KLF16 SMARCA4 PBX2 KDM1A NPIPB14P LOC400541 ENSG00000200164 SNTB2 PDXDC2P PDPR NIP7 TMED6 CHTF8 NONOP1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TMED6 on UCSC Golden Path with GeneCards custom track

Genomic Location for TMED6 Gene

Chromosome:
16
Start:
69,343,246 bp from pter
End:
69,351,809 bp from pter
Size:
8,564 bases
Orientation:
Minus strand

Genomic View for TMED6 Gene

Genes around TMED6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMED6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMED6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMED6 Gene

Proteins for TMED6 Gene

  • Protein details for TMED6 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8WW62-TMED6_HUMAN
    Recommended name:
    Transmembrane emp24 domain-containing protein 6
    Protein Accession:
    Q8WW62
    Secondary Accessions:
    • Q6UXN5

    Protein attributes for TMED6 Gene

    Size:
    240 amino acids
    Molecular mass:
    27631 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TMED6 Gene

Post-translational modifications for TMED6 Gene

  • Glycosylation at Asn 107 and Asn 156
  • Modification sites at PhosphoSitePlus

Other Protein References for TMED6 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for TMED6 Gene

Domains & Families for TMED6 Gene

Gene Families for TMED6 Gene

Protein Domains for TMED6 Gene

Suggested Antigen Peptide Sequences for TMED6 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8WW62

UniProtKB/Swiss-Prot:

TMED6_HUMAN :
  • Contains 1 GOLD domain.
  • Belongs to the EMP24/GP25L family.
Domain:
  • Contains 1 GOLD domain.
Family:
  • Belongs to the EMP24/GP25L family.
genes like me logo Genes that share domains with TMED6: view

Function for TMED6 Gene

genes like me logo Genes that share phenotypes with TMED6: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TMED6 Gene

Localization for TMED6 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TMED6 Gene

Endoplasmic reticulum membrane; Single-pass type I membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for TMED6 gene
Compartment Confidence
endoplasmic reticulum 4
extracellular 2
plasma membrane 1
lysosome 1

Gene Ontology (GO) - Cellular Components for TMED6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005789 endoplasmic reticulum membrane IEA --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with TMED6: view

Pathways & Interactions for TMED6 Gene

SuperPathways for TMED6 Gene

No Data Available

Interacting Proteins for TMED6 Gene

Selected Interacting proteins: Q8WW62-TMED6_HUMAN for TMED6 Gene via IID

Symbol External ID(s) Details
SEC23IP

Gene Ontology (GO) - Biological Process for TMED6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006810 transport IEA --
genes like me logo Genes that share ontologies with TMED6: view

No data available for Pathways by source and SIGNOR curated interactions for TMED6 Gene

Transcripts for TMED6 Gene

mRNA/cDNA for TMED6 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(19) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TMED6 Gene

Transmembrane emp24 protein transport domain containing 6:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TMED6 Gene

No ASD Table

Relevant External Links for TMED6 Gene

GeneLoc Exon Structure for
TMED6
ECgene alternative splicing isoforms for
TMED6

Expression for TMED6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TMED6 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for TMED6 Gene

This gene is overexpressed in Pancreas (x29.5) and Stomach (x10.5).

Protein differential expression in normal tissues from HIPED for TMED6 Gene

This gene is overexpressed in Pancreas (56.8) and Islet of Langerhans (12.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for TMED6 Gene



Protein tissue co-expression partners for TMED6 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of TMED6 Gene:

TMED6

SOURCE GeneReport for Unigene cluster for TMED6 Gene:

Hs.729118
genes like me logo Genes that share expression patterns with TMED6: view

Primer Products

No data available for mRNA Expression by UniProt/SwissProt for TMED6 Gene

Orthologs for TMED6 Gene

This gene was present in the common ancestor of animals.

Orthologs for TMED6 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 35
  • 100 (a)
OneToMany
TMED6 34
  • 99.58 (n)
dog
(Canis familiaris)
Mammalia -- 35
  • 90 (a)
OneToMany
TMED6 34
  • 89.03 (n)
cow
(Bos Taurus)
Mammalia TMED6 34 35
  • 88.47 (n)
rat
(Rattus norvegicus)
Mammalia Tmed6 34
  • 81.79 (n)
mouse
(Mus musculus)
Mammalia Tmed6 34 16 35
  • 81.45 (n)
oppossum
(Monodelphis domestica)
Mammalia -- 35
  • 76 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 74 (a)
OneToMany
chicken
(Gallus gallus)
Aves TMED6 34
  • 69.15 (n)
-- 35
  • 66 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 62 (a)
OneToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia tmed6 34
  • 66.22 (n)
zebrafish
(Danio rerio)
Actinopterygii LOC101884766 34
  • 57.62 (n)
TMED6 35
  • 43 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta loj 35
  • 25 (a)
OneToMany
Species where no ortholog for TMED6 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for TMED6 Gene

ENSEMBL:
Gene Tree for TMED6 (if available)
TreeFam:
Gene Tree for TMED6 (if available)

Paralogs for TMED6 Gene

Paralogs for TMED6 Gene

genes like me logo Genes that share paralogs with TMED6: view

Variants for TMED6 Gene

Sequence variations from dbSNP and Humsavar for TMED6 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1048818 -- 69,342,783(+) GATGA(C/T)GCTAG downstream-variant-500B, utr-variant-3-prime
rs10607828 -- 69,348,127(+) CTTAT(-/TAT)ATTTG intron-variant
rs10707380 -- 69,352,394(+) TTTTT(-/T)CTGAG upstream-variant-2KB
rs1095599 -- 69,344,918(-) agaga(C/T)ggggt intron-variant
rs111449287 -- 69,347,206(+) TATAC(G/T)AAAAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TMED6 Gene

Variant ID Type Subtype PubMed ID
nsv476041 CNV novel sequence insertion 20440878

Variation tolerance for TMED6 Gene

Residual Variation Intolerance Score: 87% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.19; 39.58% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TMED6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMED6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TMED6 Gene

Disorders for TMED6 Gene

Relevant External Links for TMED6

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TMED6

No disorders were found for TMED6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TMED6 Gene

Publications for TMED6 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  2. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark H.F. … Gray A.M. (Genome Res. 2003) 3 4 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  4. TMED6-COG8 is a novel molecular marker of TFE3 translocation renal cell carcinoma. (PMID: 26045774) Xu Y. … Zhou X. (Int J Clin Exp Pathol 2015) 3 64

Products for TMED6 Gene

Sources for TMED6 Gene

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