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Aliases for TMED6 Gene

Aliases for TMED6 Gene

  • Transmembrane P24 Trafficking Protein 6 2 3 5
  • Transmembrane Emp24 Protein Transport Domain Containing 6 2 3
  • P24 Family Protein Gamma-5 3 4
  • P24gamma5 3 4
  • Transmembrane Emp24 Domain-Containing Protein 6 3
  • PRO34237 3
  • SPLL9146 3
  • P24g5 3

External Ids for TMED6 Gene

Previous GeneCards Identifiers for TMED6 Gene

  • GC16M067935
  • GC16M069377
  • GC16M055254

Summaries for TMED6 Gene

GeneCards Summary for TMED6 Gene

TMED6 (Transmembrane P24 Trafficking Protein 6) is a Protein Coding gene. An important paralog of this gene is ENSG00000259900.

Additional gene information for TMED6 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMED6 Gene

Genomics for TMED6 Gene

GeneHancer (GH) Regulatory Elements for TMED6 Gene

Promoters and enhancers for TMED6 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I069351 Promoter/Enhancer 1.3 EPDnew ENCODE 550.8 +0.1 132 1.3 DRAP1 MXI1 ZNF792 SAP130 ZNF644 ZNF48 ZSCAN9 YY1 POLR2A PRDM10 TMED6 ENSG00000259900 SNTB2 NIP7 ENSG00000260371 PIR44456
GH16I069350 Enhancer 0.6 ENCODE 550.8 +0.9 936 0.2 SOX5 SOX13 FOXA2 FOXA3 HLF PPARG RARA FOXA1 NFIL3 HNF1A TMED6 ENSG00000259900 SNTB2 ENSG00000260371 PIR44456
GH16I069402 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 19 -56.4 -56369 11.5 PKNOX1 FOXA2 MLX ZFP64 ARID4B SIN3A FEZF1 DMAP1 SLC30A9 ZNF213 TERF2 NFAT5 PDPR PDXDC2P-NPIPB14P NONOP1 LOC400541 PDXDC2P NPIPB14P DDX19A SNTB2
GH16I069325 Enhancer 1.1 Ensembl ENCODE 18 +24.9 24915 2.3 FOXA2 ARID4B DMAP1 ZNF48 YY1 SLC30A9 ZNF121 RXRA ZHX2 MXD4 PIR31148 PIR53878 PIR53140 PIR43287 PIR50457 GC16M069465 UTP4 TMED6 NIP7 CHTF8
GH16I069130 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 7.9 +219.8 219797 3.9 HDGF PKNOX1 CLOCK SMAD1 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 CHTF8 UTP4 SNTB2 PDPR NFAT5 NONOP1 PDXDC2P-NPIPB14P NPIPB14P PDXDC2P RNU6-22P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TMED6 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the TMED6 gene promoter:

Genomic Locations for TMED6 Gene

Genomic Locations for TMED6 Gene
chr16:69,343,246-69,351,809
(GRCh38/hg38)
Size:
8,564 bases
Orientation:
Minus strand
chr16:69,377,149-69,385,712
(GRCh37/hg19)

Genomic View for TMED6 Gene

Genes around TMED6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMED6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMED6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMED6 Gene

Proteins for TMED6 Gene

  • Protein details for TMED6 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8WW62-TMED6_HUMAN
    Recommended name:
    Transmembrane emp24 domain-containing protein 6
    Protein Accession:
    Q8WW62
    Secondary Accessions:
    • Q6UXN5

    Protein attributes for TMED6 Gene

    Size:
    240 amino acids
    Molecular mass:
    27631 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TMED6 Gene

Post-translational modifications for TMED6 Gene

  • Glycosylation at posLast=107107 and isoforms=156

Other Protein References for TMED6 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for TMED6 Gene

Domains & Families for TMED6 Gene

Gene Families for TMED6 Gene

Protein Domains for TMED6 Gene

Suggested Antigen Peptide Sequences for TMED6 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8WW62

UniProtKB/Swiss-Prot:

TMED6_HUMAN :
  • Belongs to the EMP24/GP25L family.
Family:
  • Belongs to the EMP24/GP25L family.
genes like me logo Genes that share domains with TMED6: view

Function for TMED6 Gene

Phenotypes From GWAS Catalog for TMED6 Gene

genes like me logo Genes that share phenotypes with TMED6: view

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TMED6 Gene

Localization for TMED6 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TMED6 Gene

Endoplasmic reticulum membrane; Single-pass type I membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for TMED6 gene
Compartment Confidence
endoplasmic reticulum 4
extracellular 2
plasma membrane 1
lysosome 1

Gene Ontology (GO) - Cellular Components for TMED6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005789 endoplasmic reticulum membrane IEA --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with TMED6: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for TMED6 Gene

Pathways & Interactions for TMED6 Gene

SuperPathways for TMED6 Gene

No Data Available

Interacting Proteins for TMED6 Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
http://version10.5.string-db.org/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000288025%0d%0a9606.ENSP00000404042%0d%0a9606.ENSP00000330945%0d%0a
Selected Interacting proteins: ENSP00000288025 Q8WW62-TMED6_HUMAN for TMED6 Gene via STRING IID

Gene Ontology (GO) - Biological Process for TMED6 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TMED6 Gene

Drugs & Compounds for TMED6 Gene

No Compound Related Data Available

Transcripts for TMED6 Gene

mRNA/cDNA for TMED6 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(19) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TMED6 Gene

Transmembrane emp24 protein transport domain containing 6:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TMED6 Gene

No ASD Table

Relevant External Links for TMED6 Gene

GeneLoc Exon Structure for
TMED6
ECgene alternative splicing isoforms for
TMED6

Expression for TMED6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TMED6 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for TMED6 Gene

This gene is overexpressed in Pancreas (x29.5) and Stomach (x10.5).

Protein differential expression in normal tissues from HIPED for TMED6 Gene

This gene is overexpressed in Pancreas (56.8) and Islet of Langerhans (12.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for TMED6 Gene



Protein tissue co-expression partners for TMED6 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of TMED6 Gene:

TMED6

SOURCE GeneReport for Unigene cluster for TMED6 Gene:

Hs.729118

Evidence on tissue expression from TISSUES for TMED6 Gene

  • Liver(4.1)
  • Pancreas(2.5)
genes like me logo Genes that share expression patterns with TMED6: view

No data available for mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for TMED6 Gene

Orthologs for TMED6 Gene

This gene was present in the common ancestor of animals.

Orthologs for TMED6 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 34
  • 100 (a)
OneToMany
TMED6 33
  • 99.58 (n)
dog
(Canis familiaris)
Mammalia -- 34
  • 90 (a)
OneToMany
TMED6 33
  • 89.03 (n)
cow
(Bos Taurus)
Mammalia TMED6 33 34
  • 88.47 (n)
rat
(Rattus norvegicus)
Mammalia Tmed6 33
  • 81.79 (n)
mouse
(Mus musculus)
Mammalia Tmed6 33 16 34
  • 81.45 (n)
oppossum
(Monodelphis domestica)
Mammalia -- 34
  • 76 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 34
  • 74 (a)
OneToMany
chicken
(Gallus gallus)
Aves TMED6 33
  • 69.15 (n)
-- 34
  • 66 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 34
  • 62 (a)
OneToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia tmed6 33
  • 66.22 (n)
zebrafish
(Danio rerio)
Actinopterygii LOC101884766 33
  • 57.62 (n)
TMED6 34
  • 43 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta loj 34
  • 25 (a)
OneToMany
Species where no ortholog for TMED6 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for TMED6 Gene

ENSEMBL:
Gene Tree for TMED6 (if available)
TreeFam:
Gene Tree for TMED6 (if available)

Paralogs for TMED6 Gene

Paralogs for TMED6 Gene

genes like me logo Genes that share paralogs with TMED6: view

Variants for TMED6 Gene

Sequence variations from dbSNP and Humsavar for TMED6 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000113971 -- 69,344,995(-) A/G intron_variant
rs1000464612 -- 69,344,676(-) G/C intron_variant
rs1000571616 -- 69,349,164(-) T/C intron_variant
rs1000799614 -- 69,348,530(-) G/T intron_variant
rs1000952872 -- 69,343,156(-) T/C downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for TMED6 Gene

Variant ID Type Subtype PubMed ID
nsv476041 CNV novel sequence insertion 20440878

Variation tolerance for TMED6 Gene

Residual Variation Intolerance Score: 87% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.19; 39.58% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for TMED6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMED6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TMED6 Gene

Disorders for TMED6 Gene

Additional Disease Information for TMED6

No disorders were found for TMED6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TMED6 Gene

Publications for TMED6 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  2. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark HF … Gray A (Genome research 2003) 3 4 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58
  4. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 58
  5. TMED6-COG8 is a novel molecular marker of TFE3 translocation renal cell carcinoma. (PMID: 26045774) Xu Y … Zhou X (International journal of clinical and experimental pathology 2015) 3 58

Products for TMED6 Gene

Sources for TMED6 Gene

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