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Aliases for TMED11P Gene

Aliases for TMED11P Gene

  • Transmembrane P24 Trafficking Protein 11, Pseudogene 2 3 5
  • Transmembrane Emp24 Protein Transport Domain Containing 11, Pseudogene 2 3
  • P24alpha1 3
  • P24a1 3

External Ids for TMED11P Gene

Previous GeneCards Identifiers for TMED11P Gene

  • GC00U922980
  • GC04M001109
  • GC04M001078

Summaries for TMED11P Gene

GeneCards Summary for TMED11P Gene

TMED11P (Transmembrane P24 Trafficking Protein 11, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMED11P Gene

Genomics for TMED11P Gene

Regulatory Elements for TMED11P Gene

Enhancers for TMED11P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04G001151 0.5 dbSUPER 0.7 +1.5 1506 2.4 CBX5 POLR2A FOS CTBP1-AS2 CTBP1 LOC105374344 RNF212 UVSSA ENSG00000251639 TMED11P ENSG00000227189
GH04G001153 0.5 dbSUPER 0.7 -1.6 -1584 3.0 ZFHX2 KLF1 EGR1 BHLHE40 EGR2 SPON2 RNF212 LOC105374344 ENSG00000251639 PIR56304 TMED11P
GH04G001154 0.4 dbSUPER 0.7 -1.3 -1349 1.0 BHLHE40 SPON2 ENSG00000251639 PIR56304 TMED11P
GH04G001152 0.4 dbSUPER 0.7 +1.8 1787 1.0 POLR2A FOS CTBP1-AS2 CTBP1 UVSSA TMED11P ENSG00000227189
GH04G001156 0.2 dbSUPER 0.7 -2.6 -2579 0.5 SPON2 ENSG00000251639 PIR56304 TMED11P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TMED11P on UCSC Golden Path with GeneCards custom track

Genomic Location for TMED11P Gene

Chromosome:
4
Start:
1,115,197 bp from pter
End:
1,153,726 bp from pter
Size:
38,530 bases
Orientation:
Minus strand

Genomic View for TMED11P Gene

Genes around TMED11P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMED11P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMED11P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMED11P Gene

Proteins for TMED11P Gene

Post-translational modifications for TMED11P Gene

No Post-translational modifications

No data available for DME Specific Peptides for TMED11P Gene

Domains & Families for TMED11P Gene

Gene Families for TMED11P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TMED11P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TMED11P Gene

Function for TMED11P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TMED11P Gene

Localization for TMED11P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TMED11P Gene

Pathways & Interactions for TMED11P Gene

SuperPathways for TMED11P Gene

No Data Available

Interacting Proteins for TMED11P Gene

Gene Ontology (GO) - Biological Process for TMED11P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TMED11P Gene

Transcripts for TMED11P Gene

mRNA/cDNA for TMED11P Gene

(1) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TMED11P Gene

Transmembrane emp24 protein transport domain containing 11, pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TMED11P Gene

No ASD Table

Relevant External Links for TMED11P Gene

GeneLoc Exon Structure for
TMED11P
ECgene alternative splicing isoforms for
TMED11P

Expression for TMED11P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TMED11P Gene

mRNA differential expression in normal tissues according to GTEx for TMED11P Gene

This gene is overexpressed in Pancreas (x51.3).

NURSA nuclear receptor signaling pathways regulating expression of TMED11P Gene:

TMED11P

SOURCE GeneReport for Unigene cluster for TMED11P Gene:

Hs.635208
genes like me logo Genes that share expression patterns with TMED11P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TMED11P Gene

Orthologs for TMED11P Gene

Evolution for TMED11P Gene

ENSEMBL:
Gene Tree for TMED11P (if available)
TreeFam:
Gene Tree for TMED11P (if available)

No data available for Orthologs for TMED11P Gene

Paralogs for TMED11P Gene

No data available for Paralogs for TMED11P Gene

Variants for TMED11P Gene

Sequence variations from dbSNP and Humsavar for TMED11P Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs1000027289 -- 1,118,129(+) AGGAT(C/G/T)AGCAT intron-variant
rs1000215562 -- 1,115,555(+) AAACC(A/G)GAATC intron-variant, upstream-variant-2KB
rs10002248 -- 1,124,955(+) ACATT(A/G)TGTTA intron-variant, upstream-variant-2KB
rs1000258526 -- 1,115,395(+) CGAAA(A/T)TTTTC intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1000422876 -- 1,121,412(+) AGCAC(A/G)CTCCC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TMED11P Gene

Variant ID Type Subtype PubMed ID
dgv5080n100 CNV gain 25217958
esv3575669 CNV gain 25503493
nsv1012892 CNV loss 25217958
nsv822425 CNV loss 20364138
nsv829835 CNV gain 17160897

Relevant External Links for TMED11P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMED11P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TMED11P Gene

Disorders for TMED11P Gene

Relevant External Links for TMED11P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TMED11P

No disorders were found for TMED11P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TMED11P Gene

Publications for TMED11P Gene

  1. A comprehensive overview of the vertebrate p24 family: identification of a novel tissue-specifically expressed member. (PMID: 19429673) Strating J.R. … Martens G.J. (Mol. Biol. Evol. 2009) 3 64
  2. The p24 family and selective transport processes at the ER-Golgi interface. (PMID: 19566487) Strating J.R. … Martens G.J. (Biol. Cell 2009) 3 64
  3. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington J.J. … Ducar M. (Nat. Biotechnol. 2001) 3 64

Products for TMED11P Gene

Sources for TMED11P Gene

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