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Aliases for TMED11P Gene

Aliases for TMED11P Gene

  • Transmembrane Emp24 Protein Transport Domain Containing 11, Pseudogene 2 3

External Ids for TMED11P Gene

Previous GeneCards Identifiers for TMED11P Gene

  • GC00U922980
  • GC04M001109
  • GC04M001078

Summaries for TMED11P Gene

GeneCards Summary for TMED11P Gene

TMED11P (Transmembrane Emp24 Protein Transport Domain Containing 11, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMED11P Gene

Genomics for TMED11P Gene

Genomic Location for TMED11P Gene

Start:
1,115,197 bp from pter
End:
1,153,726 bp from pter
Size:
38,530 bases
Orientation:
Minus strand

Genomic View for TMED11P Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TMED11P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMED11P Gene

No data available for Regulatory Elements for TMED11P Gene

Proteins for TMED11P Gene

Post-translational modifications for TMED11P Gene

No Post-translational modifications

No data available for DME Specific Peptides for TMED11P Gene

Domains for TMED11P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TMED11P Gene

Function for TMED11P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TMED11P Gene

Localization for TMED11P Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TMED11P Gene COMPARTMENTS Subcellular localization image for TMED11P gene
Compartment Confidence
endoplasmic reticulum 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for TMED11P Gene

Pathways for TMED11P Gene

SuperPathways for TMED11P Gene

No Data Available

Interacting Proteins for TMED11P Gene

Gene Ontology (GO) - Biological Process for TMED11P Gene

None

No data available for Pathways by source for TMED11P Gene

Transcripts for TMED11P Gene

mRNA/cDNA for TMED11P Gene

(1) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TMED11P Gene

Transmembrane emp24 protein transport domain containing 11, pseudogene:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for TMED11P

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TMED11P Gene

No ASD Table

Relevant External Links for TMED11P Gene

GeneLoc Exon Structure for
TMED11P
ECgene alternative splicing isoforms for
TMED11P

Expression for TMED11P Gene

mRNA expression in normal human tissues for TMED11P Gene

mRNA differential expression in normal tissues according to GTEx for TMED11P Gene

This gene is overexpressed in Pancreas (51.3).

SOURCE GeneReport for Unigene cluster for TMED11P Gene Hs.635208

genes like me logo Genes that share expressions with TMED11P: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for TMED11P Gene

Orthologs for TMED11P Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for TMED11P Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Tmed11 16
Species with no ortholog for TMED11P:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TMED11P Gene

ENSEMBL:
Gene Tree for TMED11P (if available)
TreeFam:
Gene Tree for TMED11P (if available)

Paralogs for TMED11P Gene

No data available for Paralogs for TMED11P Gene

Variants for TMED11P Gene

Sequence variations from dbSNP and Humsavar for TMED11P Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type MAF
rs1481167 -- 1,116,947(-) AAAGG(A/G)TTTGA intron-variant
rs1904931 -- 1,119,469(-) TTCAA(C/T)GATGT intron-variant
rs4974591 -- 1,119,373(+) ctgca(A/G)ggaaa intron-variant
rs6831520 -- 1,120,684(+) gttct(C/T)tacaa intron-variant
rs6836158 -- 1,117,806(+) agaaa(A/G)tcttg intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TMED11P Gene

Variant ID Type Subtype PubMed ID
nsv822425 CNV Loss 20364138
nsv829835 CNV Gain 17160897

Relevant External Links for TMED11P Gene

HapMap Linkage Disequilibrium report
TMED11P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TMED11P Gene

Disorders for TMED11P Gene

No disorders were found for TMED11P Gene.

No data available for UniProtKB/Swiss-Prot for TMED11P Gene

Publications for TMED11P Gene

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington J.J. … Ducar M. (Nat. Biotechnol. 2001) 3
  2. A comprehensive overview of the vertebrate p24 family: identification of a novel tissue-specifically expressed member. (PMID: 19429673) Strating J.R. … Martens G.J. (Mol. Biol. Evol. 2009) 3
  3. The p24 family and selective transport processes at the ER-Golgi interface. (PMID: 19566487) Strating J.R. … Martens G.J. (Biol. Cell 2009) 3

Products for TMED11P Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate TMED11P
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for TMED11P
    • Block miRNA regulation of TMED11P using miScript Target Protectors

    Sources for TMED11P Gene

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