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Aliases for TMCO4 Gene

Aliases for TMCO4 Gene

  • Transmembrane And Coiled-Coil Domains 4 2 3

External Ids for TMCO4 Gene

Summaries for TMCO4 Gene

GeneCards Summary for TMCO4 Gene

TMCO4 (Transmembrane And Coiled-Coil Domains 4) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMCO4 Gene

Genomics for TMCO4 Gene

Genomic Location for TMCO4 Gene

Start:
19,682,213 bp from pter
End:
19,799,945 bp from pter
Size:
117,733 bases
Orientation:
Minus strand

Genomic View for TMCO4 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TMCO4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMCO4 Gene

Regulatory Elements for TMCO4 Gene

Proteins for TMCO4 Gene

  • Protein details for TMCO4 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5TGY1-TMCO4_HUMAN
    Recommended name:
    Transmembrane and coiled-coil domain-containing protein 4
    Protein Accession:
    Q5TGY1
    Secondary Accessions:
    • Q5TGY2
    • Q6MZN5
    • Q7Z6K6
    • Q9UQP4
    • Q9Y3K1

    Protein attributes for TMCO4 Gene

    Size:
    634 amino acids
    Molecular mass:
    67910 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=CAB42850.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=CAB42851.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=CAI19015.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; Sequence=CAI20091.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

    Alternative splice isoforms for TMCO4 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TMCO4 Gene

Proteomics data for TMCO4 Gene at MOPED

Post-translational modifications for TMCO4 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for TMCO4 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for TMCO4 Gene

Domains for TMCO4 Gene

Protein Domains for TMCO4 Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

TMCO4_HUMAN
Family:
  • Belongs to the TMCO4 family.:
    • Q5TGY1
genes like me logo Genes that share domains with TMCO4: view

No data available for Gene Families for TMCO4 Gene

Function for TMCO4 Gene

miRNA for TMCO4 Gene

miRTarBase miRNAs that target TMCO4

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for TMCO4 Gene

Localization for TMCO4 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TMCO4 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TMCO4 Gene COMPARTMENTS Subcellular localization image for TMCO4 gene
Compartment Confidence
cytoskeleton 1
cytosol 1
extracellular 1
mitochondrion 1
nucleus 1
peroxisome 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for TMCO4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with TMCO4: view

Pathways for TMCO4 Gene

SuperPathways for TMCO4 Gene

No Data Available

Interacting Proteins for TMCO4 Gene

Gene Ontology (GO) - Biological Process for TMCO4 Gene

None

No data available for Pathways by source for TMCO4 Gene

Transcripts for TMCO4 Gene

Unigene Clusters for TMCO4 Gene

Transmembrane and coiled-coil domains 4:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TMCO4 Gene

ExUns: 1 ^ 2a · 2b · 2c · 2d ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7 ^ 8a · 8b · 8c · 8d ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18a · 18b ^
SP1: - -
SP2: - -
SP3: - - - - - - - -
SP4: - - - - - -
SP5: - - -
SP6: - - - -
SP7: - - -
SP8: - - -
SP9: -
SP10: - -
SP11: - - - - - -
SP12:

ExUns: 19a · 19b ^ 20a · 20b
SP1:
SP2:
SP3:
SP4:
SP5:
SP6:
SP7:
SP8:
SP9:
SP10:
SP11:
SP12:

Relevant External Links for TMCO4 Gene

GeneLoc Exon Structure for
TMCO4
ECgene alternative splicing isoforms for
TMCO4

Expression for TMCO4 Gene

mRNA expression in normal human tissues for TMCO4 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for TMCO4 Gene

SOURCE GeneReport for Unigene cluster for TMCO4 Gene Hs.656313

genes like me logo Genes that share expressions with TMCO4: view

Orthologs for TMCO4 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for TMCO4 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TMCO4 36
  • 99.11 (n)
  • 99.53 (a)
TMCO4 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia TMCO4 36
  • 86.52 (n)
  • 87.96 (a)
TMCO4 37
  • 87 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TMCO4 36
  • 88.36 (n)
  • 88.47 (a)
TMCO4 37
  • 88 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Tmco4 36
  • 81.75 (n)
  • 82.86 (a)
Tmco4 16
Tmco4 37
  • 82 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia TMCO4 37
  • 76 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TMCO4 37
  • 64 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Tmco4 36
  • 81.9 (n)
  • 83.17 (a)
chicken
(Gallus gallus)
Aves TMCO4 36
  • 67.15 (n)
  • 70.57 (a)
TMCO4 37
  • 66 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia TMCO4 37
  • 84 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia tmco4 36
  • 68.71 (n)
  • 72.94 (a)
zebrafish
(Danio rerio)
Actinopterygii tmco4 36
  • 61.85 (n)
  • 62.74 (a)
tmco4 37
  • 48 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea F35D11.3 36
  • 49.72 (n)
  • 44.65 (a)
F35D11.3 37
  • 35 (a)
OneToOne
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes -- 37
  • 14 (a)
OneToOne
-- 39
sea squirt
(Ciona savignyi)
Ascidiacea -- 37
  • 53 (a)
OneToOne
Species with no ortholog for TMCO4:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for TMCO4 Gene

ENSEMBL:
Gene Tree for TMCO4 (if available)
TreeFam:
Gene Tree for TMCO4 (if available)

Paralogs for TMCO4 Gene

No data available for Paralogs for TMCO4 Gene

Variants for TMCO4 Gene

Sequence variations from dbSNP and Humsavar for TMCO4 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs9064 -- 19,682,387(-) GACAC(A/C)ACTAA utr-variant-3-prime
rs761071 -- 19,769,458(-) GAGCC(A/G)CAGGG intron-variant
rs761072 -- 19,758,089(-) CCAGG(A/G)AAAGG intron-variant
rs909932 -- 19,741,301(-) AAATa(A/G)ccctt intron-variant
rs960242 -- 19,731,746(-) GACTG(C/T)TTTAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TMCO4 Gene

Variant ID Type Subtype PubMed ID
nsv508991 CNV Insertion 20534489
esv2744920 CNV Deletion 23290073
nsv870984 CNV Gain 21882294
esv22015 CNV Loss 19812545

Relevant External Links for TMCO4 Gene

HapMap Linkage Disequilibrium report
TMCO4

Disorders for TMCO4 Gene

Relevant External Links for TMCO4

Genetic Association Database (GAD)
TMCO4
Human Genome Epidemiology (HuGE) Navigator
TMCO4
genes like me logo Genes that share disorders with TMCO4: view

No data available for UniProtKB/Swiss-Prot for TMCO4 Gene

Publications for TMCO4 Gene

  1. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 49
  2. A second-generation genomewide screen for asthma-susceptibility alleles in a founder population. (PMID: 11022011) Ober C. … Cox N.J. (Am. J. Hum. Genet. 2000) 49
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  4. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 4
  5. The full-ORF clone resource of the German cDNA consortium. (PMID: 17974005) Bechtel S. … Schupp I. (BMC Genomics 2007) 4

Products for TMCO4 Gene

Sources for TMCO4 Gene

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