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Aliases for TMCC1-AS1 Gene

Subcategory (RNA class) for TMCC1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TMCC1-AS1 Gene

  • TMCC1 Antisense RNA 1 (Head To Head) 2 3 5

External Ids for TMCC1-AS1 Gene

Previous GeneCards Identifiers for TMCC1-AS1 Gene

  • GC03P129613

Summaries for TMCC1-AS1 Gene

GeneCards Summary for TMCC1-AS1 Gene

TMCC1-AS1 (TMCC1 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TMCC1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMCC1-AS1 Gene

Genomics for TMCC1-AS1 Gene

Regulatory Elements for TMCC1-AS1 Gene

Enhancers for TMCC1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03H129621 1.9 FANTOM5 Ensembl ENCODE dbSUPER 4.4 -268.7 -268685 7.6 HDGF FOXA2 MLX ARID4B SIN3A DMAP1 YY1 ZNF143 SP3 SP5 RNY3P13 RHO PLXND1 TMCC1-AS1 RPL32P3 GC03P129706 ENSG00000248659
GH03H129888 1.3 Ensembl ENCODE 5.4 -2.4 -2418 6.2 PKNOX1 ARID4B SIN3A DMAP1 YY1 GTF3C2 ZNF766 GLIS2 ELK1 ZNF143 ENSG00000244932 PIK3R4 RPL32P3 ISY1 H1FX RNY3P13 COPG1 TMCC1-AS1 TMCC1 ENSG00000203644
GH03H129653 1.5 Ensembl ENCODE dbSUPER 4.5 -237.5 -237496 5.1 ATF1 MLX ARNT ARID4B DMAP1 YY1 FOS SP5 JUNB REST RNY3P13 PLXND1 TMCC1 RHO ENSG00000203644 TMCC1-AS1 PIR61156 GC03P129807
GH03H129661 1.4 Ensembl ENCODE dbSUPER 4.4 -229.7 -229713 6 PKNOX1 FOXA2 NFIB SIN3A BMI1 BRCA1 ZNF2 RARA RFX5 YY1 RNY3P13 H1FX PLXND1 RHO IFT122 ENSG00000203644 TMCC1-AS1 PIR61156 GC03P129807
GH03H129792 1.2 Ensembl ENCODE 4.9 -99.1 -99101 4.1 HDAC1 TBP PKNOX1 SIN3A FEZF1 BATF RAD21 TCF12 GATA2 ZNF366 RNY3P13 IFT122 TMCC1-AS1 GC03P129807 PIR61156
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TMCC1-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for TMCC1-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000158294 -371 2201 ARID4B SIN3A DMAP1 YY1 ZNF766 ELK1 ZNF143 ZNF207 SP3 SP5

Genomic Locations for TMCC1-AS1 Gene

Genomic Locations for TMCC1-AS1 Gene
chr3:129,893,871-129,918,575
(GRCh38/hg38)
Size:
24,705 bases
Orientation:
Plus strand
chr3:129,612,714-129,637,418
(GRCh37/hg19)

Genomic View for TMCC1-AS1 Gene

Genes around TMCC1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMCC1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMCC1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMCC1-AS1 Gene

Proteins for TMCC1-AS1 Gene

Post-translational modifications for TMCC1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TMCC1-AS1 Gene

Domains & Families for TMCC1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TMCC1-AS1 Gene

Function for TMCC1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TMCC1-AS1 Gene

Localization for TMCC1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TMCC1-AS1 Gene

Pathways & Interactions for TMCC1-AS1 Gene

SuperPathways for TMCC1-AS1 Gene

No Data Available

Interacting Proteins for TMCC1-AS1 Gene

Gene Ontology (GO) - Biological Process for TMCC1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TMCC1-AS1 Gene

Drugs & Compounds for TMCC1-AS1 Gene

No Compound Related Data Available

Transcripts for TMCC1-AS1 Gene

mRNA/cDNA for TMCC1-AS1 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TMCC1-AS1 Gene

No ASD Table

Relevant External Links for TMCC1-AS1 Gene

GeneLoc Exon Structure for
TMCC1-AS1
ECgene alternative splicing isoforms for
TMCC1-AS1

Expression for TMCC1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TMCC1-AS1 Gene

genes like me logo Genes that share expression patterns with TMCC1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TMCC1-AS1 Gene

Orthologs for TMCC1-AS1 Gene

Evolution for TMCC1-AS1 Gene

ENSEMBL:
Gene Tree for TMCC1-AS1 (if available)
TreeFam:
Gene Tree for TMCC1-AS1 (if available)

No data available for Orthologs for TMCC1-AS1 Gene

Paralogs for TMCC1-AS1 Gene

No data available for Paralogs for TMCC1-AS1 Gene

Variants for TMCC1-AS1 Gene

Sequence variations from dbSNP and Humsavar for TMCC1-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000387318 -- 129,901,033(+) TCAAG(A/G)CAAGC intron-variant
rs1000477058 -- 129,907,646(+) TTTTT(A/G)TCACA nc-transcript-variant
rs1000821235 -- 129,908,141(+) GAAAG(A/T)AAAAA nc-transcript-variant
rs1000848763 -- 129,896,350(+) ACACT(C/G)CTACA intron-variant
rs1000980565 -- 129,906,931(+) ACTGT(A/G)ATGAG nc-transcript-variant

Relevant External Links for TMCC1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMCC1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TMCC1-AS1 Gene

Disorders for TMCC1-AS1 Gene

Relevant External Links for TMCC1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TMCC1-AS1

No disorders were found for TMCC1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TMCC1-AS1 Gene

Publications for TMCC1-AS1 Gene

No publications were found for TMCC1-AS1 Gene.

Products for TMCC1-AS1 Gene

Sources for TMCC1-AS1 Gene

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