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Aliases for TMCC1-AS1 Gene

Subcategory (RNA class) for TMCC1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TMCC1-AS1 Gene

  • TMCC1 Antisense RNA 1 (Head To Head) 2 3 5

External Ids for TMCC1-AS1 Gene

Previous GeneCards Identifiers for TMCC1-AS1 Gene

  • GC03P129613

Summaries for TMCC1-AS1 Gene

GeneCards Summary for TMCC1-AS1 Gene

TMCC1-AS1 (TMCC1 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TMCC1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMCC1-AS1 Gene

Genomics for TMCC1-AS1 Gene

GeneHancer (GH) Regulatory Elements for TMCC1-AS1 Gene

Promoters and enhancers for TMCC1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I129888 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE 5.4 -2.4 -2398 6.3 PKNOX1 ARID4B SIN3A DMAP1 YY1 ZNF766 ZNF207 ZNF143 FOS SP3 TMCC1 RNY3P13 TMCC1-AS1 ENSG00000203644 GC03P129794
GH03I129686 Promoter/Enhancer 1.6 Ensembl ENCODE dbSUPER 4.8 -205.8 -205811 2.6 FOXA2 ARID4B DMAP1 YY1 FOS RXRA SP5 MXD4 MIER2 REST RNY3P13 TMCC1-AS1 PIR61156 GC03P129794 GC03P129807 TMCC1
GH03I129621 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 4.4 -268.7 -268685 7.6 HDGF FOXA2 MLX ARID4B SIN3A DMAP1 YY1 ZNF143 SP3 SP5 RNY3P13 RHO PLXND1 TMCC1-AS1 RPL32P3 GC03P129794 ENSG00000248659
GH03I129653 Enhancer 1.3 Ensembl ENCODE dbSUPER 4.5 -237.5 -237495 5.1 FOXA2 ARNT MLX ARID4B DMAP1 YY1 FOS RXRA SP5 JUNB RNY3P13 PLXND1 TMCC1 RHO ENSG00000203644 TMCC1-AS1 PIR61156 GC03P129794 GC03P129807
GH03I129661 Enhancer 1.3 Ensembl ENCODE dbSUPER 4.4 -229.7 -229713 6 PKNOX1 CLOCK FOXA2 NFIB NEUROD1 SIN3A BMI1 ZNF2 BRCA1 RARA RNY3P13 PLXND1 RHO IFT122 ENSG00000203644 TMCC1-AS1 PIR61156 GC03P129794 GC03P129807 TMCC1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TMCC1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TMCC1-AS1 Gene

Genomic Locations for TMCC1-AS1 Gene
chr3:129,893,871-129,918,575
(GRCh38/hg38)
Size:
24,705 bases
Orientation:
Plus strand
chr3:129,612,714-129,637,418
(GRCh37/hg19)

Genomic View for TMCC1-AS1 Gene

Genes around TMCC1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMCC1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMCC1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMCC1-AS1 Gene

Proteins for TMCC1-AS1 Gene

Post-translational modifications for TMCC1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TMCC1-AS1 Gene

Domains & Families for TMCC1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TMCC1-AS1 Gene

Function for TMCC1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TMCC1-AS1 Gene

Localization for TMCC1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TMCC1-AS1 Gene

Pathways & Interactions for TMCC1-AS1 Gene

SuperPathways for TMCC1-AS1 Gene

No Data Available

Interacting Proteins for TMCC1-AS1 Gene

Gene Ontology (GO) - Biological Process for TMCC1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TMCC1-AS1 Gene

Drugs & Compounds for TMCC1-AS1 Gene

No Compound Related Data Available

Transcripts for TMCC1-AS1 Gene

mRNA/cDNA for TMCC1-AS1 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TMCC1-AS1 Gene

No ASD Table

Relevant External Links for TMCC1-AS1 Gene

GeneLoc Exon Structure for
TMCC1-AS1
ECgene alternative splicing isoforms for
TMCC1-AS1

Expression for TMCC1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TMCC1-AS1 Gene

genes like me logo Genes that share expression patterns with TMCC1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TMCC1-AS1 Gene

Orthologs for TMCC1-AS1 Gene

Evolution for TMCC1-AS1 Gene

ENSEMBL:
Gene Tree for TMCC1-AS1 (if available)
TreeFam:
Gene Tree for TMCC1-AS1 (if available)

No data available for Orthologs for TMCC1-AS1 Gene

Paralogs for TMCC1-AS1 Gene

No data available for Paralogs for TMCC1-AS1 Gene

Variants for TMCC1-AS1 Gene

Sequence variations from dbSNP and Humsavar for TMCC1-AS1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000387318 -- 129,901,033(+) A/G intron_variant
rs1000477058 -- 129,907,646(+) G/A non_coding_transcript_variant
rs1000821235 -- 129,908,141(+) A/T non_coding_transcript_variant
rs1000848763 -- 129,896,350(+) C/G intron_variant
rs1000980565 -- 129,906,931(+) A/G non_coding_transcript_variant

Additional Variant Information for TMCC1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMCC1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TMCC1-AS1 Gene

Disorders for TMCC1-AS1 Gene

Additional Disease Information for TMCC1-AS1

No disorders were found for TMCC1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TMCC1-AS1 Gene

Publications for TMCC1-AS1 Gene

No publications were found for TMCC1-AS1 Gene.

Products for TMCC1-AS1 Gene

Sources for TMCC1-AS1 Gene

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