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Aliases for TMCC1-AS1 Gene

Subcategory (RNA class) for TMCC1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TMCC1-AS1 Gene

  • TMCC1 Antisense RNA 1 (Head To Head) 2 3 5

External Ids for TMCC1-AS1 Gene

Previous GeneCards Identifiers for TMCC1-AS1 Gene

  • GC03P129613

Summaries for TMCC1-AS1 Gene

GeneCards Summary for TMCC1-AS1 Gene

TMCC1-AS1 (TMCC1 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMCC1-AS1 Gene

Genomics for TMCC1-AS1 Gene

Regulatory Elements for TMCC1-AS1 Gene

Enhancers for TMCC1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F129611 1.7 FANTOM5 Ensembl ENCODE 4.4 -273.7 -273710 18.1 HDGF MLX ARID4B DMAP1 YY1 ZNF143 FOS ZNF263 SP3 SP5 RPL32P3 RNY3P13 H1FX-AS1 RHO PLXND1 IFT122 ENSG00000203644 TMCC1-AS1 MBD4 GC03P129621
GH03F129888 1.1 ENCODE 5.4 -2.4 -2418 6.2 HDGF PKNOX1 ARID4B SIN3A DMAP1 YBX1 YY1 ZNF143 ZNF207 FOS ENSG00000244932 PIK3R4 RPL32P3 ISY1 H1FX RNY3P13 TMCC1-AS1 TMCC1 ENSG00000203644
GH03F129792 1.2 Ensembl ENCODE 4.9 -99.1 -99101 4.1 TBP HDAC1 PKNOX1 SIN3A FEZF1 RAD21 ZNF366 GATA2 RCOR1 ZNF263 RNY3P13 IFT122 TMCC1-AS1 GC03P129807 PIR61156
GH03F129653 1.2 Ensembl ENCODE 4.5 -237.5 -237496 5.1 ATF1 MLX ARID4B DMAP1 YY1 CBX5 SP5 JUNB MIER2 PPARG RNY3P13 PLXND1 TMCC1 RHO ENSG00000203644 TMCC1-AS1 PIR61156 GC03P129807
GH03F129661 1.2 Ensembl ENCODE 4.4 -229.7 -229713 6.0 HDAC1 PKNOX1 BRCA1 RAD21 ZNF2 RARA RFX5 YY1 SCRT2 ZNF143 RNY3P13 H1FX PLXND1 RHO IFT122 ENSG00000203644 TMCC1-AS1 PIR61156 GC03P129807
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TMCC1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TMCC1-AS1 Gene

Chromosome:
3
Start:
129,893,871 bp from pter
End:
129,918,575 bp from pter
Size:
24,705 bases
Orientation:
Plus strand

Genomic View for TMCC1-AS1 Gene

Genes around TMCC1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMCC1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMCC1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMCC1-AS1 Gene

Proteins for TMCC1-AS1 Gene

Post-translational modifications for TMCC1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TMCC1-AS1 Gene

Domains & Families for TMCC1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TMCC1-AS1 Gene

Function for TMCC1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TMCC1-AS1 Gene

Localization for TMCC1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TMCC1-AS1 Gene

Pathways & Interactions for TMCC1-AS1 Gene

SuperPathways for TMCC1-AS1 Gene

No Data Available

Interacting Proteins for TMCC1-AS1 Gene

Gene Ontology (GO) - Biological Process for TMCC1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TMCC1-AS1 Gene

Transcripts for TMCC1-AS1 Gene

mRNA/cDNA for TMCC1-AS1 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TMCC1-AS1 Gene

No ASD Table

Relevant External Links for TMCC1-AS1 Gene

GeneLoc Exon Structure for
TMCC1-AS1
ECgene alternative splicing isoforms for
TMCC1-AS1

Expression for TMCC1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TMCC1-AS1 Gene

genes like me logo Genes that share expression patterns with TMCC1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TMCC1-AS1 Gene

Orthologs for TMCC1-AS1 Gene

Evolution for TMCC1-AS1 Gene

ENSEMBL:
Gene Tree for TMCC1-AS1 (if available)
TreeFam:
Gene Tree for TMCC1-AS1 (if available)

No data available for Orthologs for TMCC1-AS1 Gene

Paralogs for TMCC1-AS1 Gene

No data available for Paralogs for TMCC1-AS1 Gene

Variants for TMCC1-AS1 Gene

Sequence variations from dbSNP and Humsavar for TMCC1-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1056190 -- 129,892,955(-) TATGT(A/G)GTGGG intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs10617326 -- 129,908,416(+) GAGAC(-/AG)AGAGA nc-transcript-variant
rs111290669 -- 129,909,407(+) AATCA(A/G)TTTCT downstream-variant-500B
rs111410696 -- 129,892,457(+) AAAAT(-/G)TATCT intron-variant, upstream-variant-2KB
rs111525910 -- 129,895,966(+) GACCC(C/T)GTCTC intron-variant

Relevant External Links for TMCC1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMCC1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TMCC1-AS1 Gene

Disorders for TMCC1-AS1 Gene

Relevant External Links for TMCC1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TMCC1-AS1

No disorders were found for TMCC1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TMCC1-AS1 Gene

Publications for TMCC1-AS1 Gene

No publications were found for TMCC1-AS1 Gene.

Products for TMCC1-AS1 Gene

Sources for TMCC1-AS1 Gene

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