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Aliases for TMC4 Gene

Aliases for TMC4 Gene

  • Transmembrane Channel-Like 4 2 3

External Ids for TMC4 Gene

Summaries for TMC4 Gene

GeneCards Summary for TMC4 Gene

TMC4 (Transmembrane Channel-Like 4) is a Protein Coding gene. Diseases associated with TMC4 include gas gangrene. An important paralog of this gene is TMC7.

UniProtKB/Swiss-Prot for TMC4 Gene

  • Probable ion channel.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMC4 Gene

Genomics for TMC4 Gene

Genomic Location for TMC4 Gene

Start:
54,160,095 bp from pter
End:
54,173,250 bp from pter
Size:
13,156 bases
Orientation:
Minus strand

Genomic View for TMC4 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TMC4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMC4 Gene

Regulatory Elements for TMC4 Gene

Proteins for TMC4 Gene

  • Protein details for TMC4 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q7Z404-TMC4_HUMAN
    Recommended name:
    Transmembrane channel-like protein 4
    Protein Accession:
    Q7Z404
    Secondary Accessions:
    • Q7Z5M3
    • Q8N5E4
    • Q8TBS7

    Protein attributes for TMC4 Gene

    Size:
    712 amino acids
    Molecular mass:
    79208 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for TMC4 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TMC4 Gene

Proteomics data for TMC4 Gene at MOPED

Post-translational modifications for TMC4 Gene

  • Modification sites at PhosphoSitePlus
  • Glycosylation at Asn101

Other Protein References for TMC4 Gene

No data available for DME Specific Peptides for TMC4 Gene

Domains for TMC4 Gene

Protein Domains for TMC4 Gene

InterPro:
Blocks:
ProtoNet:

UniProtKB/Swiss-Prot:

TMC4_HUMAN
Family:
  • Belongs to the TMC family.:
    • Q7Z404
genes like me logo Genes that share domains with TMC4: view

No data available for Gene Families for TMC4 Gene

Function for TMC4 Gene

Molecular function for TMC4 Gene

UniProtKB/Swiss-Prot Function: Probable ion channel.

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TMC4 Gene

Localization for TMC4 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TMC4 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TMC4 Gene COMPARTMENTS Subcellular localization image for TMC4 gene
Compartment Confidence
plasma membrane 3
peroxisome 2

Gene Ontology (GO) - Cellular Components for TMC4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
GO:0070062 extracellular exosome IDA 23533145
genes like me logo Genes that share ontologies with TMC4: view

Pathways for TMC4 Gene

SuperPathways for TMC4 Gene

No Data Available

Interacting Proteins for TMC4 Gene

Gene Ontology (GO) - Biological Process for TMC4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006811 ion transport IEA --
genes like me logo Genes that share ontologies with TMC4: view

No data available for Pathways by source for TMC4 Gene

Transcripts for TMC4 Gene

Unigene Clusters for TMC4 Gene

Transmembrane channel-like 4:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TMC4 Gene

ExUns: 1 ^ 2 ^ 3a · 3b · 3c ^ 4 ^ 5a · 5b ^ 6a · 6b · 6c · 6d ^ 7a · 7b ^ 8a · 8b · 8c ^ 9a · 9b ^ 10 ^ 11 ^ 12a · 12b ^ 13a · 13b · 13c ^
SP1: - - - -
SP2: - - -
SP3: -
SP4: - - -
SP5: -
SP6: -
SP7:
SP8:

ExUns: 14a · 14b · 14c
SP1:
SP2:
SP3:
SP4:
SP5:
SP6:
SP7:
SP8:

Relevant External Links for TMC4 Gene

GeneLoc Exon Structure for
TMC4
ECgene alternative splicing isoforms for
TMC4

Expression for TMC4 Gene

mRNA expression in normal human tissues for TMC4 Gene

mRNA differential expression in normal tissues according to GTEx for TMC4 Gene

This gene is overexpressed in Colon - Transverse (6.9) and Pancreas (5.5).

Integrated Proteomics: protein expression from ProteomicsDB, MOPED, and MaxQB for TMC4 Gene

SOURCE GeneReport for Unigene cluster for TMC4 Gene Hs.355126

genes like me logo Genes that share expressions with TMC4: view

Orthologs for TMC4 Gene

This gene was present in the common ancestor of chordates.

Orthologs for TMC4 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TMC4 36
  • 99.16 (n)
  • 99.02 (a)
TMC4 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia TMC4 37
  • 81 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TMC4 36
  • 83.47 (n)
  • 83.57 (a)
TMC4 37
  • 80 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Tmc4 36
  • 79.7 (n)
  • 76.74 (a)
Tmc4 16
Tmc4 37
  • 76 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia TMC4 37
  • 59 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TMC4 37
  • 57 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia TMC4 37
  • 41 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii tmc4 37
  • 36 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 37
  • 31 (a)
OneToMany
Species with no ortholog for TMC4:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for TMC4 Gene

ENSEMBL:
Gene Tree for TMC4 (if available)
TreeFam:
Gene Tree for TMC4 (if available)

Paralogs for TMC4 Gene

Paralogs for TMC4 Gene

Selected SIMAP similar genes for TMC4 Gene using alignment to 3 proteins:

Pseudogenes.org Pseudogenes for TMC4 Gene

genes like me logo Genes that share paralogs with TMC4: view

Variants for TMC4 Gene

Sequence variations from dbSNP and Humsavar for TMC4 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs36653 -- 54,164,753(-) GGAGC(A/G)GGTGG intron-variant
rs36654 -- 54,164,014(-) CTGGG(C/T)AACAG intron-variant
rs36655 -- 54,162,234(-) ACCCA(A/G)GAGTT reference, synonymous-codon
rs254280 -- 54,166,361(-) CTGCC(C/T)GTCTT intron-variant
rs589022 -- 54,165,162(-) gggag(A/C)ccgag intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TMC4 Gene

Variant ID Type Subtype PubMed ID
esv2718812 CNV Deletion 23290073
dgv4001n71 CNV Loss 21882294
nsv515623 CNV Loss 19592680
dgv4002n71 CNV Loss 21882294
nsv912398 CNV Loss 21882294
nsv510774 CNV Loss 20534489
nsv9751 CNV Gain 18304495
dgv1118e1 CNV Complex 17122850
nsv428371 CNV Gain+Loss 18775914
dgv1119e1 CNV Complex 17122850
esv2718857 CNV Deletion 23290073
esv1685576 CNV Deletion 17803354

Relevant External Links for TMC4 Gene

HapMap Linkage Disequilibrium report
TMC4

Disorders for TMC4 Gene

(1) MalaCards Diseases for TMC4 Gene

Search for TMC4 Gene in MalaCards »

(2) University of Copenhagen DISEASES for TMC4 Gene

genes like me logo Genes that share disorders with TMC4: view

No data available for UniProtKB/Swiss-Prot for TMC4 Gene

Publications for TMC4 Gene

  1. Characterization of the transmembrane channel-like (TMC) gene family: functional clues from hearing loss and epidermodysplasia verruciformis. (PMID: 12906855) Kurima K. … Griffith A.J. (Genomics 2003) 2 3 4 23
  2. TMC and EVER genes belong to a larger novel family, the TMC gene family encoding transmembrane proteins. (PMID: 12812529) Keresztes G. … Heller S. (BMC Genomics 2003) 2 3 4
  3. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh J.H. … Kim N.S. (Mamm. Genome 2005) 3
  4. In-depth proteomic analyses of exosomes isolated from expressed prostatic secretions in urine. (PMID: 23533145) Principe S. … Drake R.R. (Proteomics 2013) 3
  5. An atlas of genetic influences on human blood metabolites. (PMID: 24816252) Shin S.Y. … Soranzo N. (Nat. Genet. 2014) 3

Products for TMC4 Gene

Sources for TMC4 Gene

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