Free for academic non-profit institutions. Other users need a Commercial license

Aliases for TMA7 Gene

Aliases for TMA7 Gene

  • Translation Machinery Associated 7 Homolog 2 3 5
  • Coiled-Coil Domain-Containing Protein 72 3 4
  • Coiled-Coil Domain Containing 72 2 3
  • CCDC72 3 4
  • Translation Machinery Associated 7 Homolog (S. Cerevisiae) 2
  • Translational Machinery Associated 7 Homolog 3
  • Translation Machinery-Associated Protein 7 3
  • HSPC016 3

External Ids for TMA7 Gene

Previous HGNC Symbols for TMA7 Gene

  • CCDC72

Previous GeneCards Identifiers for TMA7 Gene

  • GC03P048481

Summaries for TMA7 Gene

GeneCards Summary for TMA7 Gene

TMA7 (Translation Machinery Associated 7 Homolog) is a Protein Coding gene. An important paralog of this gene is ENSG00000225528.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMA7 Gene

Genomics for TMA7 Gene

Regulatory Elements for TMA7 Gene

Enhancers for TMA7 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G048424 1.7 Ensembl ENCODE dbSUPER 62.7 -9.6 -9630 12.1 MLX CREB3L1 AGO1 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 TMA7 SHISA5 FBXW12 NME6 SPINK8 CDC25A RNU7-128P NDUFB1P1 TREX1 LAMB2
GH03G048464 1.4 ENCODE dbSUPER 67.9 +29.8 29832 11.4 HDGF PKNOX1 CREB3L1 ARNT AGO1 ZFP64 WRNIP1 SIN3A ARID4B DMAP1 TMA7 ATRIP SHISA5 ENSG00000223343 ENSG00000244380 CCDC51 PLXNB1 COL7A1 PFKFB4 UCN2
GH03G048551 2 FANTOM5 Ensembl ENCODE dbSUPER 37.6 +119.0 119014 15.4 HDGF PKNOX1 MLX WRNIP1 ARID4B SIN3A DMAP1 FEZF1 ZNF2 YY1 TMA7 WDR6 COL7A1 ENSG00000244380 ATRIP CCDC51 FBXW12 NME6 CDC25A RNU7-128P
GH03G048397 1.1 dbSUPER 68 -41.4 -41398 2.6 HDGF PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 YY1 ZNF143 ZNF263 SP3 TMA7 NME6 SHISA5 QRICH1 PLXNB1 FBXW12 CCDC51 ATRIP ENSG00000244380 ENSG00000225399
GH03G048439 1.1 ENCODE 63 +0.5 493 3.2 HDGF PKNOX1 MLX CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 YY1 ZNF143 TMA7 NME6 SHISA5 QRICH1 ENSG00000225399 IMPDH2 CDC25A ZNF589 CCDC51
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TMA7 on UCSC Golden Path with GeneCards custom track

Promoters for TMA7 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000152105 143 2001 HDGF PKNOX1 MLX CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 YY1 ZNF143

Genomic Location for TMA7 Gene

Chromosome:
3
Start:
48,440,257 bp from pter
End:
48,444,208 bp from pter
Size:
3,952 bases
Orientation:
Plus strand

Genomic View for TMA7 Gene

Genes around TMA7 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMA7 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMA7 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMA7 Gene

Proteins for TMA7 Gene

  • Protein details for TMA7 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9Y2S6-TMA7_HUMAN
    Recommended name:
    Translation machinery-associated protein 7
    Protein Accession:
    Q9Y2S6
    Secondary Accessions:
    • Q9P052

    Protein attributes for TMA7 Gene

    Size:
    64 amino acids
    Molecular mass:
    7066 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TMA7 Gene

Post-translational modifications for TMA7 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for TMA7 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for TMA7 Gene

Domains & Families for TMA7 Gene

Protein Domains for TMA7 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for TMA7 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9Y2S6

UniProtKB/Swiss-Prot:

TMA7_HUMAN :
  • Belongs to the TMA7 family.
Family:
  • Belongs to the TMA7 family.
genes like me logo Genes that share domains with TMA7: view

No data available for Gene Families for TMA7 Gene

Function for TMA7 Gene

genes like me logo Genes that share phenotypes with TMA7: view

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TMA7 Gene

Localization for TMA7 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for TMA7 gene
Compartment Confidence
nucleus 4
extracellular 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for TMA7 Gene

Pathways & Interactions for TMA7 Gene

No Data Available

Interacting Proteins for TMA7 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://version10.5.string-db.org/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000397843%0d%0a9606.ENSP00000324792%0d%0a
Selected Interacting proteins: ENSP00000397843 Q9Y2S6-TMA7_HUMAN for TMA7 Gene via STRING IID

Gene Ontology (GO) - Biological Process for TMA7 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TMA7 Gene

Drugs & Compounds for TMA7 Gene

No Compound Related Data Available

Transcripts for TMA7 Gene

mRNA/cDNA for TMA7 Gene

Unigene Clusters for TMA7 Gene

Translation machinery associated 7 homolog (S. cerevisiae):
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TMA7 Gene

No ASD Table

Relevant External Links for TMA7 Gene

GeneLoc Exon Structure for
TMA7
ECgene alternative splicing isoforms for
TMA7

Expression for TMA7 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TMA7 Gene

Protein differential expression in normal tissues from HIPED for TMA7 Gene

This gene is overexpressed in Ovary (8.8).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for TMA7 Gene



Protein tissue co-expression partners for TMA7 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of TMA7 Gene:

TMA7

SOURCE GeneReport for Unigene cluster for TMA7 Gene:

Hs.356440

mRNA Expression by UniProt/SwissProt for TMA7 Gene:

Q9Y2S6-TMA7_HUMAN
Tissue specificity: Expressed in dermal papilla cells with aggregative behavior.

Evidence on tissue expression from TISSUES for TMA7 Gene

  • Nervous system(3.6)
  • Blood(2.3)
  • Spleen(2.3)
  • Lung(2.2)
  • Eye(2)
  • Heart(2)
  • Thyroid gland(2)
genes like me logo Genes that share expression patterns with TMA7: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and Phenotype-based relationships between genes and organs from Gene ORGANizer for TMA7 Gene

Orthologs for TMA7 Gene

This gene was present in the common ancestor of chordates.

Orthologs for TMA7 Gene

Organism Taxonomy Gene Similarity Type Details
dog
(Canis familiaris)
Mammalia TMA7 35
  • 100 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia TMA7 34 35
  • 99.48 (n)
rat
(Rattus norvegicus)
Mammalia Tma7 34
  • 95.31 (n)
mouse
(Mus musculus)
Mammalia Tma7 34 16 35
  • 94.27 (n)
cow
(Bos Taurus)
Mammalia TMA7 34 35
  • 92.71 (n)
lizard
(Anolis carolinensis)
Reptilia TMA7 35
  • 91 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.6296 34
zebrafish
(Danio rerio)
Actinopterygii tma7 35
  • 83 (a)
OneToOne
Dr.13334 34
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.10125 34
Species where no ortholog for TMA7 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for TMA7 Gene

ENSEMBL:
Gene Tree for TMA7 (if available)
TreeFam:
Gene Tree for TMA7 (if available)

Paralogs for TMA7 Gene

Paralogs for TMA7 Gene

genes like me logo Genes that share paralogs with TMA7: view

Variants for TMA7 Gene

Sequence variations from dbSNP and Humsavar for TMA7 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000260863 -- 48,441,221(+) TTGTA(C/T)TTTTA intron-variant, upstream-variant-2KB
rs1000335407 -- 48,441,432(+) CCCGC(C/T)TCTGC intron-variant, upstream-variant-2KB
rs1000591725 -- 48,442,585(+) TAGCT(A/G/T)GGATT intron-variant
rs1000666637 -- 48,442,715(+) AAAGT(C/G)CTGGG intron-variant
rs1001453941 -- 48,438,988(+) GTCCC(C/T)AGCTC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for TMA7 Gene

Variant ID Type Subtype PubMed ID
nsv508917 CNV insertion 20534489
nsv590242 CNV loss 21841781
nsv834683 CNV gain 17160897
nsv834684 CNV gain 17160897
nsv965164 CNV duplication 23825009

Variation tolerance for TMA7 Gene

Residual Variation Intolerance Score: 48.7% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.08; 1.86% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TMA7 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMA7

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TMA7 Gene

Disorders for TMA7 Gene

Relevant External Links for TMA7

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TMA7

No disorders were found for TMA7 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TMA7 Gene

Publications for TMA7 Gene

  1. Apoptosis of the dermal papilla cells of hair follicle associated with the expression of gene HSPCO16 in vitro. (PMID: 15740594) Yang W.B. … Ni B. (Exp. Dermatol. 2005) 2 3 22 64
  2. Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells. (PMID: 11042152) Zhang Q.-H. … Chen Z. (Genome Res. 2000) 2 3 4 64
  3. Identification of differentially expressed genes HSPC016 in dermal papilla cells with aggregative behavior. (PMID: 16096800) Zhiqiang S. … Chunlan L. (Arch. Dermatol. Res. 2005) 3 4 64
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  5. Serine ADP-ribosylation depends on HPF1. (PMID: 28190768) Bonfiglio J.J. … Matic I. (Mol. Cell 2017) 4 64

Products for TMA7 Gene

Sources for TMA7 Gene

Content
Loading form....