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Aliases for TMA16 Gene

Aliases for TMA16 Gene

  • Translation Machinery Associated 16 Homolog (S. Cerevisiae) 2 3
  • C4orf43 3 4
  • Translation Machinery-Associated Protein 16 3
  • Chromosome 4 Open Reading Frame 43 2
  • UPF0534 Protein C4orf43 3

External Ids for TMA16 Gene

Previous Symbols for TMA16 Gene

  • C4orf43

Summaries for TMA16 Gene

GeneCards Summary for TMA16 Gene

TMA16 (Translation Machinery Associated 16 Homolog (S. Cerevisiae)) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMA16 Gene

Genomics for TMA16 Gene

Genomic Location for TMA16 Gene

Start:
163,494,442 bp from pter
End:
163,520,539 bp from pter
Size:
26,098 bases
Orientation:
Plus strand

Genomic View for TMA16 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TMA16 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMA16 Gene

No data available for Regulatory Elements for TMA16 Gene

Proteins for TMA16 Gene

  • Protein details for TMA16 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96EY4-TMA16_HUMAN
    Recommended name:
    Translation machinery-associated protein 16
    Protein Accession:
    Q96EY4
    Secondary Accessions:
    • Q0P6E4
    • Q0P6J1
    • Q9NUR7

    Protein attributes for TMA16 Gene

    Size:
    203 amino acids
    Molecular mass:
    23864 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TMA16 Gene

Proteomics data for TMA16 Gene at MOPED

Post-translational modifications for TMA16 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for TMA16 Gene

No data available for DME Specific Peptides for TMA16 Gene

Domains for TMA16 Gene

Protein Domains for TMA16 Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

TMA16_HUMAN
Family:
  • Belongs to the UPF0534 family.:
    • Q96EY4
genes like me logo Genes that share domains with TMA16: view

No data available for Gene Families for TMA16 Gene

Function for TMA16 Gene

Gene Ontology (GO) - Molecular Function for TMA16 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with TMA16: view

Phenotypes for TMA16 Gene

GenomeRNAi human phenotypes for TMA16:
genes like me logo Genes that share phenotypes with TMA16: view

miRNA for TMA16 Gene

miRTarBase miRNAs that target TMA16

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for TMA16 Gene

Localization for TMA16 Gene

Gene Ontology (GO) - Cellular Components for TMA16 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA --
GO:0005730 nucleolus IDA --
genes like me logo Genes that share ontologies with TMA16: view

Pathways for TMA16 Gene

SuperPathways for TMA16 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TMA16 Gene

None

No data available for Pathways by source for TMA16 Gene

Transcripts for TMA16 Gene

Unigene Clusters for TMA16 Gene

Translation machinery associated 16 homolog (S. cerevisiae):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TMA16 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b
SP1:
SP2: -

Relevant External Links for TMA16 Gene

GeneLoc Exon Structure for
TMA16
ECgene alternative splicing isoforms for
TMA16

Expression for TMA16 Gene

mRNA expression in normal human tissues for TMA16 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for TMA16 Gene

SOURCE GeneReport for Unigene cluster for TMA16 Gene Hs.267446

genes like me logo Genes that share expressions with TMA16: view

Orthologs for TMA16 Gene

This gene was present in the common ancestor of animals.

Orthologs for TMA16 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TMA16 36
  • 99.67 (n)
  • 99.51 (a)
TMA16 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia TMA16 36
  • 86.7 (n)
  • 82.76 (a)
TMA16 37
  • 83 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TMA16 36
  • 90.15 (n)
  • 88.18 (a)
TMA16 37
  • 88 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Tma16 36
  • 83.5 (n)
  • 77.72 (a)
Tma16 16
Tma16 37
  • 71 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia TMA16 37
  • 72 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TMA16 37
  • 61 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Tma16 36
  • 83 (n)
  • 78.22 (a)
chicken
(Gallus gallus)
Aves C4H4ORF43 36
  • 69.46 (n)
  • 72.46 (a)
TMA16 37
  • 65 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia TMA16 37
  • 66 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.11691 36
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.10731 36
tma16 36
  • 66.84 (n)
  • 67.89 (a)
zebrafish
(Danio rerio)
Actinopterygii Dr.17669 36
tma16 36
  • 65.26 (n)
  • 65.26 (a)
tma16 37
  • 61 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP003543 36
  • 48.61 (n)
  • 38.89 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG15027 36
  • 47.56 (n)
  • 35.33 (a)
CG15027 37
  • 31 (a)
OneToOne
Species with no ortholog for TMA16:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for TMA16 Gene

ENSEMBL:
Gene Tree for TMA16 (if available)
TreeFam:
Gene Tree for TMA16 (if available)

Paralogs for TMA16 Gene

Pseudogenes.org Pseudogenes for TMA16 Gene

genes like me logo Genes that share paralogs with TMA16: view

No data available for Paralogs for TMA16 Gene

Variants for TMA16 Gene

Sequence variations from dbSNP and Humsavar for TMA16 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type MAF
rs1055241 -- 163,519,775(+) AGGGA(G/T)CAATA utr-variant-3-prime
rs1074604 -- 163,516,093(-) GGAAA(G/T)AGTGG intron-variant
rs1441721 -- 163,518,938(+) ATTAC(A/G/T)TCTAA intron-variant
rs1441722 -- 163,519,215(+) TTTAA(C/T)GCTTT intron-variant
rs1561736 - 163,519,429(+) AACTA(C/T)TATAA missense, reference

Relevant External Links for TMA16 Gene

HapMap Linkage Disequilibrium report
TMA16

No data available for Structural Variations from Database of Genomic Variants (DGV) for TMA16 Gene

Disorders for TMA16 Gene

No disorders were found for TMA16 Gene.

No data available for UniProtKB/Swiss-Prot for TMA16 Gene

Publications for TMA16 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3
  4. Defining the human deubiquitinating enzyme interaction landscape. (PMID: 19615732) Sowa M.E. … Harper J.W. (Cell 2009) 3
  5. Comparison of substrate specificity of the ubiquitin ligases Nedd4 and Nedd4-2 using proteome arrays. (PMID: 19953087) Persaud A. … Rotin D. (Mol. Syst. Biol. 2009) 3

Products for TMA16 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate TMA16
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for TMA16
    • Block miRNA regulation of TMA16 using miScript Target Protectors

    Sources for TMA16 Gene

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