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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

TMA16 Gene

protein-coding   GIFtS: 40
GCID: GC04P164416

Translation Machinery Associated 16 Homolog (S. Cerevisiae)

(Previous name: chromosome 4 open reading frame 43)
(Previous symbol: C4orf43)
  Search for TMA16
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Translation Machinery Associated 16 Homolog (S. Cerevisiae)1 2
C4orf431 2 3
Chromosome 4 Open Reading Frame 431
Translation Machinery-Associated Protein 162
UPF0534 Protein C4orf432

External Ids:    HGNC: 256381   Entrez Gene: 553192   Ensembl: ENSG000001984987   UniProtKB: Q96EY43   

Export aliases for TMA16 gene to outside databases


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for TMA16 Gene: 
TMA16 (translation machinery associated 16 homolog (S. cerevisiae)) is a protein-coding gene.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000004.11  NC_018915.2  NT_016354.19  
Regulatory elements:
   Search SABiosciences Regulatory transcription factor binding sites for TMA16
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search SABiosciences Chromatin IP Primers for TMA16

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat TMA16


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 4q32.2   Ensembl cytogenetic band:  4q32.2   HGNC cytogenetic band: 4q32.3

TMA16 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
TMA16 gene location

GeneLoc information about chromosome 4         GeneLoc Exon Structure

GeneLoc location for GC04P164416:  view genomic region     (about GC identifiers)

Start:
164,415,594 bp from pter      End:
164,441,691 bp from pter
Size:
26,098 bases      Orientation:
plus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: TMA16_HUMAN, Q96EY4 (See protein sequence)
Recommended Name: Translation machinery-associated protein 16  
Size: 203 amino acids; 23864 Da
Secondary accessions: Q0P6E4 Q0P6J1 Q9NUR7

Explore the universe of human proteins at neXtProt for TMA16: NX_Q96EY4

Explore proteomics data for TMA16 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_Q96EY4

  • TMA16 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    TMA16 Protein Expression
    REFSEQ proteins: NP_060822.2  
    ENSEMBL proteins: 
     ENSP00000425347   ENSP00000351380   ENSP00000426933   ENSP00000423901   ENSP00000423375  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    1 InterPro protein domain:
     IPR021346 DUF2962

    Graphical View of Domain Structure for InterPro Entry Q96EY4

    ProtoNet protein and cluster: Q96EY4

    UniProtKB/Swiss-Prot: TMA16_HUMAN, Q96EY4
    Similarity: Belongs to the UPF0534 family


    TMA16 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

    Phenotypes:
         1 GenomeRNAi human phenotype for TMA16:
     Increased HPV18 LCR reporter a 

    Animal Models:
       inGenious Targeting Laboratory - Custom generated mouse model solutions for TMA16 
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    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for TMA16

    STRING Interaction Network Preview (showing 5 interactants - click image to see 7)

    5/9 Interacting proteins for TMA16 (Q96EY43 ENSP000003513804) via UniProtKB, MINT, STRING, and/or I2D (see all 9)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    MCCP235083, ENSP000003862274I2D: score=1 STRING: ENSP00000386227
    G3BP1Q132833, ENSP000003485784I2D: score=2 STRING: ENSP00000348578
    IKBKGQ9Y6K93, ENSP000003586224I2D: score=1 STRING: ENSP00000358622
    MAP1LC3BQ9GZQ83, ENSP000002686074I2D: score=1 STRING: ENSP00000268607
    LYARQ9NX583, ENSP000003459174I2D: score=1 STRING: ENSP00000345917
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for TMA16

    Search CenterWatch for drugs/clinical trials and news about TMA16

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for TMA16 gene: 
    NM_018352.2  

    Unigene Cluster for TMA16:

    Translation machinery associated 16 homolog (S. cerevisiae)
    Hs.267446  [show with all ESTs]
    Unigene Representative Sequence: NM_018352
    9 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000509657 ENST00000358572(uc003iqq.4) ENST00000513272 ENST00000511562
    ENST00000508652 ENST00000513134 ENST00000508268 ENST00000506214 ENST00000503148

    miRNA
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    Inhib. RNA
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    Additional mRNA sequence: 

    AK002046.1 AK298235.1 BC005204.1 BC011842.2 BC017418.1 

    6 DOTS entries:

    DT.450257  DT.91757835  DT.95270724  DT.100789622  DT.91757839  DT.99946993 

    24/140 AceView cDNA sequences (see all 140):

    AA909754 BU195558 CR620535 AA976852 BU159489 BX370094 BU521127 BM472398 
    CR602863 CR595986 CR608348 AI381993 CR612293 AW072372 AI122657 AA708672 
    CR605828 BQ433290 AI285136 AI367124 AI754554 AA332250 AW518118 AA678072 

    GeneLoc Exon Structure

    2 Alternative Splicing Database (ASD) splice patterns (SP) for TMA16    About this scheme

    ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b
    SP1:                              
    SP2:        -                     


    ECgene alternative splicing isoforms for TMA16

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    TMA16 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: CCCAAAGCAC
    TMA16 Expression
    About this image


    See TMA16 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for TMA16

    SOURCE GeneReport for Unigene cluster: Hs.267446
        SABiosciences Custom PCR Arrays for TMA16
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TMA16

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for TMA16 gene from 6/14 species (see all 14)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Tma161 , 5 RIKEN cDNA 1810029B16 gene5
    translation machinery associated 16 homolog (S. cerevisiae)1
    83.5(n)1
    77.72(a)1
      8 (33.14 cM)5
    662821  NM_025465.21  NP_079741.11 
     664743305 
    chicken
    (Gallus gallus)
    Aves TMA161 translation machinery associated 16 homolog (S. cerevisiae) 69.46(n)
    72.46(a)
      770087  XM_001233404.2  XP_001233405.2 
    lizard
    (Anolis carolinensis)
    Reptilia TMA166
    translation machinery associated 16 homolog (S. ce...
    62(a)
    1 ↔ 1
    5(126023958-126057102)
    African clawed frog
    (Xenopus laevis)
    Amphibia Xl.116912 Xenopus laevis transcribed sequence with weak similarity more 76.36(n)    BX843702.1 
    zebrafish
    (Danio rerio)
    Actinopterygii Dr.176692 Transcribed sequence with weak similarity to protein more 72.64(n)    BQ074502.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG150271 CG15027 47.46(n)
    35.1(a)
      32440  NM_132771.1  NP_572999.1 


    ENSEMBL Gene Tree for TMA16 (if available)
    TreeFam Gene Tree for TMA16 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for TMA16 gene

    TMA16 for paralogs           About GeneDecksing


    2 Pseudogenes.org Pseudogenes for TMA16
    PGOHUM00000242305 PGOHUM00000244004


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/549 SNPs in TMA16 are shown (see all 549)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 4 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs801353921,2
    F--164413713(+) TTTTAC/TTGTAC 1 -- us2k12Minor allele frequency- T:0.09CSA WA 120
    rs1845244221,2
    --164413903(+) GACAAA/GAAACA 1 -- us2k10--------
    rs1494966941,2
    --164413919(+) CAAAAC/TCCCCA 1 -- us2k10--------
    rs1883240151,2
    --164413992(+) GTATAC/TATTCA 1 -- us2k10--------
    rs1430832431,2
    --164414053(+) TACCTC/TGCCCC 1 -- us2k10--------
    rs76733221,2
    C,F,H--164414061(+) CCCTAG/CATTCA 1 -- us2k18Minor allele frequency- C:0.15NS EA CSA WA NA 762
    rs1389161131,2
    --164414089(+) CTCTTA/GTTTAC 1 -- us2k10--------
    rs1144238621,2
    F--164414123(+) GATATA/GTCTGT 1 -- us2k11Minor allele frequency- G:0.03WA 118
    rs1421629961,2
    --164414127(+) TATCTA/GTCGAT 1 -- us2k10--------
    rs1808284351,2
    --164414162(+) GAGAAC/TAGGGT 1 -- us2k10--------

    HapMap Linkage Disequilibrium report for TMA16 (164415594 - 164441691 bp)

    Structural Variations
          Database of Genomic Variants (DGV) variations for TMA16: --
    SABiosciences Cancer Mutation PCR Assays
    SeqTarget long-range PCR primers for resequencing TMA16
    DNA2.0 Custom Variant and Variant Library Synthesis for TMA16

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for TMA16 gene, integrated from 9 sources (see all 12):
    (articles sorted by number of sources associating them with TMA16)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1, 3 Strausberg R.L....Marra M.A. (2002)
    3. Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (2011)
    4. Interactions of pathological hallmark proteins: tubul in polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PubMed id 21832049)1 OlA!h J....OvA!di J. (2011)
    5. Mass spectrometric analysis of lysine ubiquitylation r eveals promiscuity at site level. (PubMed id 21139048)1 Danielsen J.M....Nielsen M.L. (2011)
    6. Expanding the substantial interactome of NEMO using p rotein microarrays. (PubMed id 20098747)1 Fenner B.J....Prehn J.H. (2010)
    7. Dynamics of cullin-RING ubiquitin ligase network revea led by systematic quantitative proteomics. (PubMed id 21145461)1 Bennett E.J....Harper J.W. (2010)
    8. Comparison of substrate specificity of the ubiquitin ligases Nedd4 and Nedd4-2 using proteome arrays. (PubMed id 19953087)1 Persaud A....Rotin D. (2009)
    9. Defining the human deubiquitinating enzyme interactio n landscape. (PubMed id 19615732)1 Sowa M.E....Harper J.W. (2009)
    10. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PubMed id 17207965)1 Lamesch P.... Vidal M. (2007)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 55319 HGNC: 25638 AceView: FLJ11184 Ensembl:ENSG00000198498 euGenes: HUgn55319
    ECgene: TMA16 H-InvDB: TMA16

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for TMA16 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for TMA16 gene:
    Search GeneIP for patents involving TMA16

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
    About This Section

     
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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 3 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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    (GIFtS: 73)
    transforming growth factor, beta 1
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