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Aliases for TM9SF1 Gene

Aliases for TM9SF1 Gene

  • Transmembrane 9 Superfamily Member 1 2 3 5
  • MP70 Protein Family Member 3 4
  • HMP70 3 4
  • Transmembrane Protein 9 Superfamily Member 1 3
  • Multispanning Membrane Protein (70kD) 3
  • MP70 3

External Ids for TM9SF1 Gene

Previous GeneCards Identifiers for TM9SF1 Gene

  • GC14M022030
  • GC14M018445
  • GC14M022648
  • GC14M023728
  • GC14M024658
  • GC14M004773

Summaries for TM9SF1 Gene

GeneCards Summary for TM9SF1 Gene

TM9SF1 (Transmembrane 9 Superfamily Member 1) is a Protein Coding gene. Diseases associated with TM9SF1 include Fuchs' Endothelial Dystrophy. An important paralog of this gene is ENSG00000254692.

UniProtKB/Swiss-Prot for TM9SF1 Gene

  • Plays an essential role in autophagy.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TM9SF1 Gene

Genomics for TM9SF1 Gene

Regulatory Elements for TM9SF1 Gene

Enhancers for TM9SF1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association

Enhancers around TM9SF1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TM9SF1 Gene

24,189,143 bp from pter
24,195,736 bp from pter
6,594 bases
Minus strand

Genomic View for TM9SF1 Gene

Genes around TM9SF1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TM9SF1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TM9SF1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TM9SF1 Gene

Proteins for TM9SF1 Gene

  • Protein details for TM9SF1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Transmembrane 9 superfamily member 1
    Protein Accession:
    Secondary Accessions:
    • D3DS65
    • Q86SZ6
    • Q96FI8

    Protein attributes for TM9SF1 Gene

    606 amino acids
    Molecular mass:
    68861 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for TM9SF1 Gene


neXtProt entry for TM9SF1 Gene

Post-translational modifications for TM9SF1 Gene

  • Glycosylation at Asn 178, Asn 401, and Asn 559
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for TM9SF1 Gene

Domains & Families for TM9SF1 Gene

Gene Families for TM9SF1 Gene

Protein Domains for TM9SF1 Gene


Suggested Antigen Peptide Sequences for TM9SF1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry



  • Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.
  • Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.
genes like me logo Genes that share domains with TM9SF1: view

Function for TM9SF1 Gene

Molecular function for TM9SF1 Gene

GENATLAS Biochemistry:
transmembrane 9 superfamily,member 1,ubiquitously expressed
UniProtKB/Swiss-Prot Function:
Plays an essential role in autophagy.

Phenotypes for TM9SF1 Gene

GenomeRNAi human phenotypes for TM9SF1:
genes like me logo Genes that share phenotypes with TM9SF1: view

Animal Model Products

  • Taconic Biosciences Mouse Models for TM9SF1

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for TM9SF1 Gene

Localization for TM9SF1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TM9SF1 Gene

Lysosome membrane; Multi-pass membrane protein. Cytoplasmic vesicle, autophagosome membrane; Multi-pass membrane protein.

Subcellular locations from

Jensen Localization Image for TM9SF1 Gene COMPARTMENTS Subcellular localization image for TM9SF1 gene
Compartment Confidence
lysosome 3
plasma membrane 3
vacuole 3
endoplasmic reticulum 1

Gene Ontology (GO) - Cellular Components for TM9SF1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000421 autophagosome membrane IEA --
GO:0005765 lysosomal membrane IEA --
GO:0016021 integral component of membrane IEA --
GO:0031410 cytoplasmic vesicle IEA --
genes like me logo Genes that share ontologies with TM9SF1: view

Pathways & Interactions for TM9SF1 Gene

SuperPathways for TM9SF1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TM9SF1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006914 autophagy IEA --
genes like me logo Genes that share ontologies with TM9SF1: view

No data available for Pathways by source and SIGNOR curated interactions for TM9SF1 Gene

Drugs & Compounds for TM9SF1 Gene

No Compound Related Data Available

Transcripts for TM9SF1 Gene

Unigene Clusters for TM9SF1 Gene

Transmembrane 9 superfamily member 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TM9SF1 Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b · 2c ^ 3a · 3b · 3c ^ 4a · 4b ^ 5a · 5b ^ 6a · 6b · 6c ^ 7a · 7b ^ 8 ^ 9a · 9b · 9c ^ 10a · 10b · 10c
SP1: - - -
SP2: - - - - - - - - - - - - - -
SP3: - - -
SP4: - - - -
SP5: - -
SP6: -
SP7: -
SP8: - - - -
SP9: -
SP10: - -

Relevant External Links for TM9SF1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for TM9SF1 Gene

mRNA expression in normal human tissues for TM9SF1 Gene

Protein differential expression in normal tissues from HIPED for TM9SF1 Gene

This gene is overexpressed in Nasal epithelium (46.9) and Breast (6.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for TM9SF1 Gene

Protein tissue co-expression partners for TM9SF1 Gene

NURSA nuclear receptor signaling pathways regulating expression of TM9SF1 Gene:


SOURCE GeneReport for Unigene cluster for TM9SF1 Gene:


mRNA Expression by UniProt/SwissProt for TM9SF1 Gene:

Tissue specificity: Expressed in lung, pancreas, kidney, liver, placenta, skeletal muscle, heart and brain. The amount in skeletal muscle, heart and brain were considerably lower than in the other tissues.
genes like me logo Genes that share expression patterns with TM9SF1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA differential expression in normal tissues for TM9SF1 Gene

Orthologs for TM9SF1 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for TM9SF1 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia TM9SF1 34
  • 94.06 (n)
  • 97.52 (a)
-- 35
  • 98 (a)
(Canis familiaris)
Mammalia TM9SF1 34
  • 94.17 (n)
  • 98.51 (a)
-- 35
  • 73 (a)
(Mus musculus)
Mammalia Tm9sf1 34
  • 92.96 (n)
  • 97.52 (a)
Tm9sf1 16
Tm9sf1 35
  • 98 (a)
(Pan troglodytes)
Mammalia TM9SF1 34
  • 99.72 (n)
  • 100 (a)
-- 35
  • 74 (a)
(Rattus norvegicus)
Mammalia Tm9sf1 34
  • 92.64 (n)
  • 96.94 (a)
(Monodelphis domestica)
Mammalia -- 35
  • 90 (a)
(Anolis carolinensis)
Reptilia -- 35
  • 87 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia tm9sf1 34
  • 71.6 (n)
  • 82.04 (a)
(Danio rerio)
Actinopterygii tm9sf1 34
  • 70.49 (n)
  • 76.01 (a)
tm9sf1 35
  • 72 (a)
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.10722 34
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes EMP70 35
  • 27 (a)
TMN2 35
  • 26 (a)
thale cress
(Arabidopsis thaliana)
eudicotyledons AT2G01970 34
  • 53.8 (n)
  • 49.29 (a)
(Oryza sativa)
Liliopsida Os.47365 34
Os03g0237000 34
  • 53.74 (n)
  • 48.1 (a)
(Zea mays)
Liliopsida Zm.17591 34
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.4226 34
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 62 (a)
Species where no ortholog for TM9SF1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for TM9SF1 Gene

Gene Tree for TM9SF1 (if available)
Gene Tree for TM9SF1 (if available)

Paralogs for TM9SF1 Gene

Paralogs for TM9SF1 Gene

genes like me logo Genes that share paralogs with TM9SF1: view

Variants for TM9SF1 Gene

Sequence variations from dbSNP and Humsavar for TM9SF1 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs10583 - 24,192,971(-) GGAGC(A/G)TCGGA reference, missense
rs11549700 - 24,194,968(-) CAATC(A/C)TGATA intron-variant, reference, missense
rs3215724 -- 24,192,428(-) GGGGG(-/G)CTGAT intron-variant
rs3742503 -- 24,191,022(+) CACCA(C/T)GCCCG intron-variant
rs3742504 -- 24,191,117(+) GCCTC(A/G)GCCTC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TM9SF1 Gene

Variant ID Type Subtype PubMed ID
nsv1220 CNV insertion 18451855

Variation tolerance for TM9SF1 Gene

Residual Variation Intolerance Score: 10.7% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 12.02; 93.72% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TM9SF1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TM9SF1 Gene

Disorders for TM9SF1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for TM9SF1 Gene - From: DISEASES

Disorder Aliases PubMed IDs
fuchs' endothelial dystrophy
  • fced
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for TM9SF1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
genes like me logo Genes that share disorders with TM9SF1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for TM9SF1 Gene

Publications for TM9SF1 Gene

  1. Cloning of a human multispanning membrane protein cDNA: evidence for a new protein family. (PMID: 9332367) Chluba-de Tapia J. … Eberle A.N. (Gene 1997) 2 3 4 22 65
  2. High-throughput functional screening for autophagy-related genes and identification of TM9SF1 as an autophagosome-inducing gene. (PMID: 19029833) He P. … Ma D. (Autophagy 2009) 3 4 65
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 65
  4. A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein M.Y. … Mann M. (Cell 2015) 3 65
  5. ErbB2-associated changes in the lysosomal proteome. (PMID: 21674799) Nylandsted J. … JAoAottelAo M. (Proteomics 2011) 3 65

Products for TM9SF1 Gene

Sources for TM9SF1 Gene

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