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Aliases for TM7SF3 Gene

Aliases for TM7SF3 Gene

  • Transmembrane 7 Superfamily Member 3 2 3
  • Seven Span Transmembrane Protein 4

External Ids for TM7SF3 Gene

Previous GeneCards Identifiers for TM7SF3 Gene

  • GC12M027486
  • GC12M027137
  • GC12M027026
  • GC12M027017
  • GC12M027124
  • GC12M026894

Summaries for TM7SF3 Gene

GeneCards Summary for TM7SF3 Gene

TM7SF3 (Transmembrane 7 Superfamily Member 3) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TM7SF3 Gene

Genomics for TM7SF3 Gene

Regulatory Elements for TM7SF3 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for TM7SF3 Gene

Start:
26,971,570 bp from pter
End:
27,014,434 bp from pter
Size:
42,865 bases
Orientation:
Minus strand

Genomic View for TM7SF3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TM7SF3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TM7SF3 Gene

Proteins for TM7SF3 Gene

  • Protein details for TM7SF3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NS93-TM7S3_HUMAN
    Recommended name:
    Transmembrane 7 superfamily member 3
    Protein Accession:
    Q9NS93
    Secondary Accessions:
    • B3KMZ3
    • Q9NUS4

    Protein attributes for TM7SF3 Gene

    Size:
    570 amino acids
    Molecular mass:
    64166 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TM7SF3 Gene

Proteomics data for TM7SF3 Gene at MOPED

Post-translational modifications for TM7SF3 Gene

  • Ubiquitination at Lys213, Lys553, and Lys558
  • Glycosylation at Asn27, Asn61, Asn75, Asn87, and Asn264
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for TM7SF3 Gene

Domains for TM7SF3 Gene

Protein Domains for TM7SF3 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for TM7SF3 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TM7SF3: view

No data available for Gene Families and UniProtKB/Swiss-Prot for TM7SF3 Gene

Function for TM7SF3 Gene

Gene Ontology (GO) - Molecular Function for TM7SF3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
genes like me logo Genes that share ontologies with TM7SF3: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TM7SF3 Gene

Localization for TM7SF3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TM7SF3 Gene

Cell membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TM7SF3 Gene COMPARTMENTS Subcellular localization image for TM7SF3 gene
Compartment Confidence
plasma membrane 5
lysosome 1
vacuole 1

Gene Ontology (GO) - Cellular Components for TM7SF3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane IEA --
GO:0016021 integral component of membrane IEA --
GO:0070062 extracellular exosome IDA 19056867
genes like me logo Genes that share ontologies with TM7SF3: view

Pathways for TM7SF3 Gene

SuperPathways for TM7SF3 Gene

No Data Available

Interacting Proteins for TM7SF3 Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000342322%0d%0a9606.ENSP00000344818%0d%0a9606.ENSP00000385269%0d%0a
Selected Interacting proteins: ENSP00000342322 Q9NS93-TM7S3_HUMAN for TM7SF3 Gene via STRING I2D

Gene Ontology (GO) - Biological Process for TM7SF3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with TM7SF3: view

No data available for Pathways by source for TM7SF3 Gene

Transcripts for TM7SF3 Gene

Unigene Clusters for TM7SF3 Gene

Transmembrane 7 superfamily member 3:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for TM7SF3

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TM7SF3 Gene

ExUns: 1a · 1b · 1c · 1d · 1e · 1f · 1g ^ 2a · 2b · 2c · 2d ^ 3a · 3b ^ 4a · 4b · 4c ^ 5a · 5b ^ 6 ^ 7a · 7b ^ 8 ^ 9 ^ 10 ^ 11
SP1: -
SP2: - -
SP3: - - - - - - - -
SP4: - - -
SP5: - - -
SP6: - - - - - - - -
SP7:
SP8: - -
SP9: -
SP10: - - - - - -
SP11: - - - - - - - - - - -
SP12: - - - - - - - - -

Relevant External Links for TM7SF3 Gene

GeneLoc Exon Structure for
TM7SF3
ECgene alternative splicing isoforms for
TM7SF3

Expression for TM7SF3 Gene

mRNA expression in normal human tissues for TM7SF3 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for TM7SF3 Gene

SOURCE GeneReport for Unigene cluster for TM7SF3 Gene Hs.438641

mRNA Expression by UniProt/SwissProt for TM7SF3 Gene

Q9NS93-TM7S3_HUMAN
Tissue specificity: Ubiquitous. The highest expression is in kidney
genes like me logo Genes that share expressions with TM7SF3: view

In Situ Assay Products

No data available for mRNA differential expression in normal tissues for TM7SF3 Gene

Orthologs for TM7SF3 Gene

This gene was present in the common ancestor of animals.

Orthologs for TM7SF3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TM7SF3 35
  • 99.42 (n)
  • 99.3 (a)
TM7SF3 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia TM7SF3 35
  • 86.2 (n)
  • 82.81 (a)
TM7SF3 36
  • 83 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TM7SF3 35
  • 87.68 (n)
  • 86.62 (a)
TM7SF3 36
  • 87 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Tm7sf3 35
  • 79.17 (n)
  • 78.41 (a)
Tm7sf3 16
Tm7sf3 36
  • 78 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia TM7SF3 36
  • 72 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TM7SF3 36
  • 87 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Tm7sf3 35
  • 79.35 (n)
  • 78.23 (a)
chicken
(Gallus gallus)
Aves TM7SF3 35
  • 67.15 (n)
  • 62.66 (a)
TM7SF3 36
  • 61 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia TM7SF3 36
  • 62 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.18521 35
zebrafish
(Danio rerio)
Actinopterygii tm7sf3 35
  • 56.52 (n)
  • 53.06 (a)
tm7sf3 36
  • 51 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP012612 35
  • 39.68 (n)
  • 33.33 (a)
Species with no ortholog for TM7SF3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for TM7SF3 Gene

ENSEMBL:
Gene Tree for TM7SF3 (if available)
TreeFam:
Gene Tree for TM7SF3 (if available)

Paralogs for TM7SF3 Gene

No data available for Paralogs for TM7SF3 Gene

Variants for TM7SF3 Gene

Sequence variations from dbSNP and Humsavar for TM7SF3 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type MAF
rs4856 -- 26,973,743(-) CTTTT(C/T)CTTAT utr-variant-3-prime, nc-transcript-variant
rs9699 -- 26,971,851(-) TGACC(A/G)TTTAC utr-variant-3-prime, nc-transcript-variant
rs15556 -- 26,971,722(-) TATAC(C/T)ATCTG utr-variant-3-prime, nc-transcript-variant
rs1053724 -- 26,971,806(-) CTTCA(G/T)TAACA utr-variant-3-prime, nc-transcript-variant
rs1127782 -- 26,973,263(-) TGAAG(A/C)TTGAG utr-variant-3-prime, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for TM7SF3 Gene

Variant ID Type Subtype PubMed ID
nsv898935 CNV Loss 21882294
dgv1397n71 CNV Loss 21882294
nsv898938 CNV Loss 21882294
esv2509925 CNV Deletion 19546169
esv2196642 CNV Deletion 18987734
esv2745662 CNV Deletion 23290073
esv2674997 CNV Deletion 23128226
nsv523964 CNV Loss 19592680

Relevant External Links for TM7SF3 Gene

HapMap Linkage Disequilibrium report
TM7SF3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TM7SF3 Gene

Disorders for TM7SF3 Gene

Relevant External Links for TM7SF3

Genetic Association Database (GAD)
TM7SF3
Human Genome Epidemiology (HuGE) Navigator
TM7SF3
genes like me logo Genes that share disorders with TM7SF3: view

No data available for UniProtKB/Swiss-Prot for TM7SF3 Gene

Publications for TM7SF3 Gene

  1. Isolation and characterization of a novel gene encoding a putative seven-span transmembrane protein, TM7SF3. (PMID: 10828615) Akashi H. … Nakamura Y. (Cytogenet. Cell Genet. 2000) 2 3 4
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. A large-scale candidate gene association study of age at menarche and age at natural menopause. (PMID: 20734064) He C. … Hunter D.J. (Hum. Genet. 2010) 3 48
  5. Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level. (PMID: 21139048) Danielsen J.M. … Nielsen M.L. (Mol. Cell Proteomics 2011) 3

Products for TM7SF3 Gene

Sources for TM7SF3 Gene

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