TM4SF5 Gene
protein-coding GIFtS : 47
GCID: GC17 P004675
transmembrane 4 L six family member 5 (Previous name: transmembrane 4 superfamily member 5 )
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Aliasesfor TM4SF5 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Transmembrane 4 L Six Family Member 5 1 2 Transmembrane 4 Superfamily Member 51 2 Tetraspan Transmembrane Protein L6H2 3 Transmembrane 4 L6 Family Member 52
Export aliases for TM4SF5 gene to outside databases Previous GC identifers: GC17P005102 GC17P005020 GC17P004625 GC17P004881 GC17P004621 GC17P004563
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Summariesfor TM4SF5 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for TM4SF5 : The protein encoded by this gene is a member of the transmembrane 4 superfamily, also known as the tetraspanin family. Most of these members are cell-surface proteins that are characterized by the presence of four hydrophobic domains. The proteins mediate signal transduction events that play a role in the regulation of cell development, activation, growth and motility. This encoded protein is a cell surface glycoprotein and is highly similar in sequence and structure to transmembrane 4 superfamily member 1. It may play a role in cell proliferation, and overexpression of this protein may be associated with the uncontrolled growth of tumour cells. (provided by RefSeq, Jul 2008) Gene Wiki entry for TM4SF5
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Genomic Viewsfor TM4SF5 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000017.10 NC_018928.1 NT_010718.16 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the TM4SF5 gene promoter: PPAR-alpha NF-1 NF-kappaB2 RelA LCR-F1 NF-kappaB NF-kappaB1 Evi-1 Other transcription factors Search SABiosciences Chromatin IP Primers for TM4SF5 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat TM4SF5
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 17p13.3 Ensembl cytogenetic band: 17p13.2 HGNC cytogenetic band: 17p13.3 TM4SF5 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 17 GeneLoc Exon Structure
GeneLoc location for GC17P004675: view genomic region
(about GC identifiers )
Start:
4,675,179 bp from pter
End:
4,686,506 bp from pter
Size:
11,328 bases
Orientation:
plus strand
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Proteinsfor TM4SF5 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: T4S5_HUMAN, O14894 (See
protein sequence )Recommended Name: Transmembrane 4 L6 family member 5 Size : 197 amino acids; 20823 Da
Subcellular location : Membrane; Multi-pass membrane protein
Secondary accessions : Q17RW9 Q6IB79Explore the universe of human proteins at neXtProt for TM4SF5: NX_O14894 TM4SF5 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_003954.2 ENSEMBL proteins: ENSP00000270560 Human Recombinant Protein Products: Gene Ontology (GO): 1 cellular component term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005887 integral to plasma membrane
TAS 9479038
TM4SF5 for ontologies About GeneDecksing TM4SF5 Antibody Products: Assay Products for TM4SF5:
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Protein
Domains / Familiesfor TM4SF5 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
TM4SF5 for domains About GeneDecksing 1 InterPro domain/family :
Graphical View of Domain Structure for InterPro Entry O14894 ProtoNet protein and cluster: O14894
1 Blocks protein family : IPB008661 L6 membrane UniProtKB/Swiss-Prot: T4S5_HUMAN, O14894 Similarity : Belongs to the L6 tetraspanin family
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Functionfor TM4SF5 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: Genatlas biochemistry entry for TM4SF5 : transmembrane 4 superfamily,member 5 (tetraspanin family),overexpressed in pancreas cancer,highly homolog to the tumor associated antigen L6 Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for TM4SF5 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for TM4SF5OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: TM4SF5 (NM_003963 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for TM4SF5 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat TM4SF5
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Pathways & Interactionsfor TM4SF5 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for TM4SF5
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Drugs & Compoundsfor TM4SF5 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for TM4SF5 Search CenterWatch for drugs/clinical trials and news about TM4SF5 / T4S5
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Transcriptsfor TM4SF5 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
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Tagged/untagged cDNA clones from
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SwitchGear Genomics ,
GenScript ,
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Primers from
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QIAGEN
)About This Section REFSEQ mRNAs for TM4SF5 gene: NM_003963.2 Unigene Cluster for TM4SF5:
Transmembrane 4 L six family member 5 Hs.184194 [show with all ESTs ] Unigene Representative Sequence: W84524 2 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000576530 ENST00000270560 (uc002fyw.1 ) Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for TM4SF5 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for TM4SF5OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: TM4SF5 (NM_003963 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for TM4SF5 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat TM4SF5
Additional cDNA sequence: AF027204.1 BC069519.1 BC093688.1 BC117163.1 CR456925.1 CR541798.1
2 DOTS entries : DT.102821322 DT.86852291
24/47 AceView cDNA sequences (see all 47 ):
NM_003963 CD617743 AF027204 W84524 BC069519 CD617746 CR541798 CR456925 CD617742 AA844492 AX772822 T25072 CD617745 W84512 BF435758 CD617741 BG186169 AI242043 BV179260 AA910944 H49257 AI284409 AA631650 BV168028 GeneLoc Exon Structure
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Expression for TM4SF5 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section TM4SF5 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: GGCGGCTTCA
About this image TM4SF5 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table 1 LifeMap In Vivo Development Anatomical Compartment/Cell Tissue Anatomical Compartment
Cell Category (developmental path) Heart Atrioventricular Canal Atrioventricular Canal Cells Myocardium Expression: Positive Negative
Selective markerExperimental details:
Curated
Microarrays
In-situ hybridization
See TM4SF5 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for TM4SF5 SOURCE GeneReport for Unigene cluster: Hs.184194 UniProtKB/Swiss-Prot: T4S5_HUMAN, O14894 Tissue specificity : Intestine. Overexpressed in pancreatic cancers SABiosciences Custom PCR Arrays for TM4SF5 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for TM4SF5Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat TM4SF5 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat TM4SF5 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat TM4SF5
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Orthologsfor TM4SF5 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of chordates.
Orthologs for TM4SF5 gene from 2/9 species (see all 9 ) About this table
Organism
Taxonomic classification
Gene
Description
Human Similarity
Orthology Type
Details
lizard (Anolis carolinensis)
Reptilia
TM4SF56
--
54(a)
1 ↔ 1
AAWZ02039070(5010-7845)
zebrafish (Danio rerio)
Actinopterygii
tm4sf51
transmembrane 4 L six family member 5
58.99(n) 57.59(a)
 
436645 NM_001002372.1 NP_001002372.1
ENSEMBL Gene Tree for TM4SF5 (if available)TreeFam Gene Tree for TM4SF5 (if available)
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Paralogsfor TM4SF5 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for TM4SF5 gene TM4SF4 2 TM4SF19 2 TM4SF18 2 TM4SF1 2 4 SIMAP similar genes for TM4SF5 using alignment to 2 protein entries: T4S5_HUMAN (see all proteins ):TM4SF1 TM4SF4 TM4SF18 TM4SF19
TM4SF5 for paralogs About GeneDecksing
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Genomic Variantsfor TM4SF5 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 17 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for TM4SF5 (4675179 - 4686506 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 1 variation for TM4SF5 1 CNV : 4985
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing TM4SF5
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Disorders
/ Diseasesfor TM4SF5 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
TM4SF5 for disorders About GeneDecksing
OMIM gene information: 604657
OMIM disorders : --3 diseases for TM4SF5 : About MalaCards gastric cancer pancreatic cancer pancreatitis Export disorders for TM4SF5 gene to outside databases
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Publicationsfor TM4SF5 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for TM4SF5 gene, integrated from 9 sources (see all 21 ): (articles sorted by number of sources associating them with TM4SF5) Utopia : connect your pdf to the dynamic world of online information
Identification of a new tumour-associated antigen TM4SF5 and its expression in human cancer. (PubMed id 9479038) 1 , 2 , 3, 9 Mueller-Pillasch F.... Gress T.M. (1998) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Tetraspanin TM4SF5 mediates loss of contact inhibition through epithelial-mesenchymal transition in human hepatocarcinoma. (PubMed id 18357344) 1 , 9 Lee S.A....Lee J.W. (2008) Novel Loci for metabolic networks and multi-tissue exp ression studies reveal genes for atherosclerosis. (PubMed id 22916037) 1 Inouye M....de Bakker P.I. (2012) Genome-wide association study identifies novel loci as sociated with circulating phospho- and sphingolipid concentrations. (PubMed id 22359512) 1 Demirkan A....Schmitz G. (2012) Cross-talk between TGFb1 and EGFR signalling pathways induces TM4SF5 expression and epithelial-mesenchymal transition. (PubMed id 22292774) 1 Kang M....Lee J.W. (2012) JNK signaling activity regulates cell-cell adhesions via TM4SF5-mediated p27(Kip1) phosphorylation. (PubMed id 22014979) 1 Kim H....Lee J.W. (2012) Gefitinib resistance of cancer cells correlated with T M4SF5-mediated epithelial-mesenchymal transition. (PubMed id 22178131) 1 Lee M.S....Lee J.W. (2012) Proteasome inhibition causes epithelial-mesenchymal t ransition upon TM4SF5 expression. (PubMed id 21328452) 1 Kim J.Y....Cho M. (2011) Modulation of signaling between TM4SF5 and integrins in tumor microenvironment. (PubMed id 21196261) 1 Lee S.A....Lee J.W. (2011)
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External Searches for TM4SF5 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing TM4SF5 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing TM4SF5 gene
(According to HUGE )
About This Section --
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Specialized Databases showing TM4SF5 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for TM4SF5 gene: Search GeneIP for patents involving TM4SF5 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor TM4SF5 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for TM4SF5 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for TM4SF5 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for TM4SF5 Browse OriGene Protein Over-expression Lysates Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for TM4SF5 Browse 3'-UTR reporter clones for miRNA target validation OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for TM4SF5 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for TM4SF5 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for TM4SF5 OriGene Custom Protein Services for TM4SF5 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat TM4SF5 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing TM4SF5 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat TM4SF5 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat TM4SF5 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat TM4SF5 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat TM4SF5
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TM4SF5 Proteins, Antibodies, CLIAs, and ELISAs
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Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat TM4SF5
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