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Aliases for TM4SF19-TCTEX1D2 Gene

Subcategory (RNA class) for TM4SF19-TCTEX1D2 Gene


Quality Score for this RNA gene is


Aliases for TM4SF19-TCTEX1D2 Gene

  • TM4SF19-TCTEX1D2 Readthrough (NMD Candidate) 2 3

External Ids for TM4SF19-TCTEX1D2 Gene

Previous GeneCards Identifiers for TM4SF19-TCTEX1D2 Gene

  • GC03U901733
  • GC03M196045
  • GC03M196048

Summaries for TM4SF19-TCTEX1D2 Gene

Entrez Gene Summary for TM4SF19-TCTEX1D2 Gene

  • This locus represents naturally occurring read-through transcription between the neighboring transmembrane 4 L six family member 19 (TM4SF19) and Tctex1 domain containing 2 (TCTEX1D2) genes on chromosome 3. The read-through transcript is a candidate for nonsense-mediated mRNA decay (NMD), and is thus not expected to produce a protein product. [provided by RefSeq, Mar 2011]

GeneCards Summary for TM4SF19-TCTEX1D2 Gene

TM4SF19-TCTEX1D2 (TM4SF19-TCTEX1D2 Readthrough (NMD Candidate)) is an RNA Gene, and is affiliated with the ncRNA class. An important paralog of this gene is TM4SF19.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TM4SF19-TCTEX1D2 Gene

Genomics for TM4SF19-TCTEX1D2 Gene

Genomic Location for TM4SF19-TCTEX1D2 Gene

196,316,082 bp from pter
196,338,420 bp from pter
22,339 bases
Minus strand

Genomic View for TM4SF19-TCTEX1D2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TM4SF19-TCTEX1D2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TM4SF19-TCTEX1D2 Gene

No data available for Regulatory Elements for TM4SF19-TCTEX1D2 Gene

Proteins for TM4SF19-TCTEX1D2 Gene

Post-translational modifications for TM4SF19-TCTEX1D2 Gene

No Post-translational modifications

Other Protein References for TM4SF19-TCTEX1D2 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for TM4SF19-TCTEX1D2 Gene

Domains for TM4SF19-TCTEX1D2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TM4SF19-TCTEX1D2 Gene

Function for TM4SF19-TCTEX1D2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TM4SF19-TCTEX1D2 Gene

Localization for TM4SF19-TCTEX1D2 Gene

Gene Ontology (GO) - Cellular Components for TM4SF19-TCTEX1D2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane --
genes like me logo Genes that share ontologies with TM4SF19-TCTEX1D2: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for TM4SF19-TCTEX1D2 Gene

Pathways for TM4SF19-TCTEX1D2 Gene

SuperPathways for TM4SF19-TCTEX1D2 Gene

No Data Available

Interacting Proteins for TM4SF19-TCTEX1D2 Gene

Gene Ontology (GO) - Biological Process for TM4SF19-TCTEX1D2 Gene


No data available for Pathways by source for TM4SF19-TCTEX1D2 Gene

Transcripts for TM4SF19-TCTEX1D2 Gene

mRNA/cDNA for TM4SF19-TCTEX1D2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TM4SF19-TCTEX1D2 Gene

No ASD Table

Relevant External Links for TM4SF19-TCTEX1D2 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for TM4SF19-TCTEX1D2 Gene

No Expression Related Data Available

Primer Products

In Situ Assay Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for TM4SF19-TCTEX1D2 Gene

Orthologs for TM4SF19-TCTEX1D2 Gene

This gene was present in the common ancestor of chordates.

Orthologs for TM4SF19-TCTEX1D2 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia -- 36
  • 83 (a)
(Canis familiaris)
Mammalia -- 36
  • 83 (a)
(Monodelphis domestica)
Mammalia -- 36
  • 65 (a)
(Mus musculus)
Mammalia Tm4sf19 36
  • 79 (a)
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 44 (a)
(Pan troglodytes)
Mammalia -- 36
  • 99 (a)
(Gallus gallus)
Aves TM4SF19 36
  • 36 (a)
(Anolis carolinensis)
Reptilia -- 36
  • 45 (a)
(Danio rerio)
Actinopterygii si:ch211-137i24.10 36
  • 36 (a)
Species with no ortholog for TM4SF19-TCTEX1D2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for TM4SF19-TCTEX1D2 Gene

Gene Tree for TM4SF19-TCTEX1D2 (if available)
Gene Tree for TM4SF19-TCTEX1D2 (if available)

Paralogs for TM4SF19-TCTEX1D2 Gene

Paralogs for TM4SF19-TCTEX1D2 Gene

genes like me logo Genes that share paralogs with TM4SF19-TCTEX1D2: view

Variants for TM4SF19-TCTEX1D2 Gene

Structural Variations from Database of Genomic Variants (DGV) for TM4SF19-TCTEX1D2 Gene

Variant ID Type Subtype PubMed ID
dgv1549e1 CNV Complex 17122850
dgv5373n71 CNV Gain 21882294
nsv878182 CNV Loss 21882294
nsv4183 CNV Loss 18451855
esv2726576 CNV Deletion 23290073
nsv509878 CNV Loss 20534489
nsv513108 CNV Loss 21212237
esv4542 CNV Deletion 18987735
esv2726577 CNV Deletion 23290073
esv2370851 CNV Deletion 18987734
esv2677485 CNV Deletion 23128226
esv2726578 CNV Deletion 23290073
esv26108 CNV Gain 19812545
esv1444129 CNV Insertion 17803354

Relevant External Links for TM4SF19-TCTEX1D2 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for TM4SF19-TCTEX1D2 Gene

Disorders for TM4SF19-TCTEX1D2 Gene

No disorders were found for TM4SF19-TCTEX1D2 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for TM4SF19-TCTEX1D2 Gene

Publications for TM4SF19-TCTEX1D2 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T. … Taylor T.D. (PLoS ONE 2010) 3

Products for TM4SF19-TCTEX1D2 Gene

Sources for TM4SF19-TCTEX1D2 Gene

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