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Aliases for TM4SF19-AS1 Gene

Subcategory (RNA class) for TM4SF19-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TM4SF19-AS1 Gene

  • TM4SF19 Antisense RNA 1 2 3 5
  • TM4SF19 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for TM4SF19-AS1 Gene

Previous GeneCards Identifiers for TM4SF19-AS1 Gene

  • GC00U933430
  • GC03P196046

Summaries for TM4SF19-AS1 Gene

GeneCards Summary for TM4SF19-AS1 Gene

TM4SF19-AS1 (TM4SF19 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TM4SF19-AS1 Gene

Genomics for TM4SF19-AS1 Gene

Regulatory Elements for TM4SF19-AS1 Gene

Enhancers for TM4SF19-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G196335 1.3 Ensembl ENCODE dbSUPER 5.3 +18.1 18071 1.2 HDAC1 BRD4 PKNOX1 ATF1 BACH1 POLR2A KDM5B ZNF584 CREM NFE2L2 TM4SF19 TM4SF19-AS1 TM4SF19-TCTEX1D2
GH03G196320 0.7 FANTOM5 0.7 +2.5 2547 0.3 SMAD5 NR2F1 AGO1 ZBED1 BACH1 POLR2H JUND POLR2A MYNN NR2C1 TM4SF19 TM4SF19-AS1 TM4SF19-TCTEX1D2
GH03G196321 0.7 ENCODE 0.7 +2.2 2167 0.4 NR2F1 AGO1 ZBED1 BACH1 POLR2H JUND POLR2A NCOR1 ZNF341 NR2C1 SLC51A TM4SF19-AS1 TM4SF19-TCTEX1D2
GH03G196334 0.5 Ensembl 0.4 +16.4 16371 0.2 POLR2H MAZ SMAD5 POLR2A SUPT5H TM4SF19-TCTEX1D2 TM4SF19-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TM4SF19-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for TM4SF19-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000164395 -230 1801 CREB3L1 ARNT AGO1 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B ZNF766 ZNF207

Genomic Location for TM4SF19-AS1 Gene

Chromosome:
3
Start:
196,318,330 bp from pter
End:
196,325,570 bp from pter
Size:
7,241 bases
Orientation:
Plus strand

Genomic View for TM4SF19-AS1 Gene

Genes around TM4SF19-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TM4SF19-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TM4SF19-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TM4SF19-AS1 Gene

Proteins for TM4SF19-AS1 Gene

Post-translational modifications for TM4SF19-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TM4SF19-AS1 Gene

Domains & Families for TM4SF19-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TM4SF19-AS1 Gene

Function for TM4SF19-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TM4SF19-AS1 Gene

Localization for TM4SF19-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TM4SF19-AS1 Gene

Pathways & Interactions for TM4SF19-AS1 Gene

SuperPathways for TM4SF19-AS1 Gene

No Data Available

Interacting Proteins for TM4SF19-AS1 Gene

Gene Ontology (GO) - Biological Process for TM4SF19-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TM4SF19-AS1 Gene

Drugs & Compounds for TM4SF19-AS1 Gene

No Compound Related Data Available

Transcripts for TM4SF19-AS1 Gene

mRNA/cDNA for TM4SF19-AS1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TM4SF19-AS1 Gene

No ASD Table

Relevant External Links for TM4SF19-AS1 Gene

GeneLoc Exon Structure for
TM4SF19-AS1
ECgene alternative splicing isoforms for
TM4SF19-AS1

Expression for TM4SF19-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TM4SF19-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TM4SF19-AS1 Gene

This gene is overexpressed in Testis (x10.3) and Adipose - Subcutaneous (x4.7).
genes like me logo Genes that share expression patterns with TM4SF19-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TM4SF19-AS1 Gene

Orthologs for TM4SF19-AS1 Gene

Evolution for TM4SF19-AS1 Gene

ENSEMBL:
Gene Tree for TM4SF19-AS1 (if available)
TreeFam:
Gene Tree for TM4SF19-AS1 (if available)

No data available for Orthologs for TM4SF19-AS1 Gene

Paralogs for TM4SF19-AS1 Gene

No data available for Paralogs for TM4SF19-AS1 Gene

Variants for TM4SF19-AS1 Gene

Sequence variations from dbSNP and Humsavar for TM4SF19-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000234732 -- 196,319,988(+) TGGCA(C/G/T)GTGCC intron-variant, upstream-variant-2KB
rs1000357265 -- 196,318,352(+) GACGC(-/G)CGACA intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1000625414 -- 196,319,015(+) ACGGG(A/G)TTTCA intron-variant, upstream-variant-2KB
rs1000690092 -- 196,320,227(+) CCAGC(C/T)AAGAG intron-variant, upstream-variant-2KB
rs1000803125 -- 196,324,768(+) ACCTT(C/T)TGCAC intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for TM4SF19-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2759213 CNV gain+loss 17122850
esv3599280 CNV loss 21293372
nsv1009811 CNV gain 25217958
nsv4183 CNV deletion 18451855
nsv593071 CNV gain 21841781
nsv997797 CNV gain 25217958

Relevant External Links for TM4SF19-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TM4SF19-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TM4SF19-AS1 Gene

Disorders for TM4SF19-AS1 Gene

Relevant External Links for TM4SF19-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TM4SF19-AS1

No disorders were found for TM4SF19-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TM4SF19-AS1 Gene

Publications for TM4SF19-AS1 Gene

No publications were found for TM4SF19-AS1 Gene.

Products for TM4SF19-AS1 Gene

Sources for TM4SF19-AS1 Gene

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