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Aliases for TM4SF19-AS1 Gene

Subcategory (RNA class) for TM4SF19-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TM4SF19-AS1 Gene

  • TM4SF19 Antisense RNA 1 2 3 5
  • TM4SF19 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for TM4SF19-AS1 Gene

Previous GeneCards Identifiers for TM4SF19-AS1 Gene

  • GC00U933430
  • GC03P196046

Summaries for TM4SF19-AS1 Gene

GeneCards Summary for TM4SF19-AS1 Gene

TM4SF19-AS1 (TM4SF19 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TM4SF19-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TM4SF19-AS1 Gene

Genomics for TM4SF19-AS1 Gene

GeneHancer (GH) Regulatory Elements for TM4SF19-AS1 Gene

Promoters and enhancers for TM4SF19-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I196316 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 550.8 -0.2 -249 2.8 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B POLR2B E2F8 ZNF143 ZNF207 TCTEX1D2 ENSG00000272741 TM4SF19-AS1 SDHAP1 SDHAP2 UBXN7 LINC00969 RNU6ATAC24P RNF168 ENSG00000271662
GH03I196335 Enhancer 1.1 Ensembl ENCODE dbSUPER 5.3 +18.1 18071 1.2 BRD4 HDAC1 PKNOX1 ATF1 BACH1 POLR2A BRD9 ATF7 CREM ZNF639 TM4SF19 TM4SF19-AS1 TM4SF19-TCTEX1D2 GC03P196178
GH03I196321 Enhancer 0.4 ENCODE 0.8 +2.2 2166 0.4 POLR2A ZNF341 SLC51A TM4SF19-AS1 TM4SF19 TM4SF19-TCTEX1D2 GC03P196178
GH03I196320 Enhancer 0.3 FANTOM5 0.8 +2.5 2547 0.3 POLR2A TM4SF19 TM4SF19-AS1 TM4SF19-TCTEX1D2 GC03P196178
GH03I196334 Enhancer 0.3 Ensembl 0.4 +16.4 16371 0.2 MAZ TM4SF19 TM4SF19-TCTEX1D2 TM4SF19-AS1 GC03P196178
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TM4SF19-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TM4SF19-AS1 Gene

Genomic Locations for TM4SF19-AS1 Gene
chr3:196,318,330-196,325,570
(GRCh38/hg38)
Size:
7,241 bases
Orientation:
Plus strand
chr3:196,045,201-196,052,441
(GRCh37/hg19)

Genomic View for TM4SF19-AS1 Gene

Genes around TM4SF19-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TM4SF19-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TM4SF19-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TM4SF19-AS1 Gene

Proteins for TM4SF19-AS1 Gene

Post-translational modifications for TM4SF19-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TM4SF19-AS1 Gene

Domains & Families for TM4SF19-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TM4SF19-AS1 Gene

Function for TM4SF19-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TM4SF19-AS1 Gene

Localization for TM4SF19-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TM4SF19-AS1 Gene

Pathways & Interactions for TM4SF19-AS1 Gene

SuperPathways for TM4SF19-AS1 Gene

No Data Available

Interacting Proteins for TM4SF19-AS1 Gene

Gene Ontology (GO) - Biological Process for TM4SF19-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TM4SF19-AS1 Gene

Drugs & Compounds for TM4SF19-AS1 Gene

No Compound Related Data Available

Transcripts for TM4SF19-AS1 Gene

mRNA/cDNA for TM4SF19-AS1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TM4SF19-AS1 Gene

No ASD Table

Relevant External Links for TM4SF19-AS1 Gene

GeneLoc Exon Structure for
TM4SF19-AS1
ECgene alternative splicing isoforms for
TM4SF19-AS1

Expression for TM4SF19-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TM4SF19-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TM4SF19-AS1 Gene

This gene is overexpressed in Testis (x10.3) and Adipose - Subcutaneous (x4.7).
genes like me logo Genes that share expression patterns with TM4SF19-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TM4SF19-AS1 Gene

Orthologs for TM4SF19-AS1 Gene

Evolution for TM4SF19-AS1 Gene

ENSEMBL:
Gene Tree for TM4SF19-AS1 (if available)
TreeFam:
Gene Tree for TM4SF19-AS1 (if available)

No data available for Orthologs for TM4SF19-AS1 Gene

Paralogs for TM4SF19-AS1 Gene

No data available for Paralogs for TM4SF19-AS1 Gene

Variants for TM4SF19-AS1 Gene

Sequence variations from dbSNP and Humsavar for TM4SF19-AS1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1056574154 pathogenic, Short-rib thoracic dysplasia 17 with or without polydactyly 196,318,038(+) G/C upstream_transcript_variant
rs1060505043 pathogenic, Short-rib thoracic dysplasia 17 with or without polydactyly 196,318,053(+) C/AG upstream_transcript_variant
rs1000234732 -- 196,319,988(+) T/A/C/G intron_variant
rs1000357265 -- 196,318,352(+) G/ non_coding_transcript_variant
rs1000625414 -- 196,319,015(+) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for TM4SF19-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2759213 CNV gain+loss 17122850
esv3599280 CNV loss 21293372
nsv1009811 CNV gain 25217958
nsv4183 CNV deletion 18451855
nsv593071 CNV gain 21841781
nsv997797 CNV gain 25217958

Additional Variant Information for TM4SF19-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TM4SF19-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TM4SF19-AS1 Gene

Disorders for TM4SF19-AS1 Gene

Additional Disease Information for TM4SF19-AS1

No disorders were found for TM4SF19-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TM4SF19-AS1 Gene

Publications for TM4SF19-AS1 Gene

No publications were found for TM4SF19-AS1 Gene.

Products for TM4SF19-AS1 Gene

Sources for TM4SF19-AS1 Gene

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