Free for academic non-profit institutions. Other users need a Commercial license

Aliases for TM4SF19-AS1 Gene

Subcategory (RNA class) for TM4SF19-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TM4SF19-AS1 Gene

  • TM4SF19 Antisense RNA 1 2 3 5
  • TM4SF19 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for TM4SF19-AS1 Gene

Previous GeneCards Identifiers for TM4SF19-AS1 Gene

  • GC00U933430
  • GC03P196046

Summaries for TM4SF19-AS1 Gene

GeneCards Summary for TM4SF19-AS1 Gene

TM4SF19-AS1 (TM4SF19 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TM4SF19-AS1 Gene

Genomics for TM4SF19-AS1 Gene

Regulatory Elements for TM4SF19-AS1 Gene

Enhancers for TM4SF19-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F196322 1.3 Ensembl ENCODE 0.8 +2.1 2127 0.5 NR2F1 ZBED1 POLR2H JUND NCOR1 POLR2A ZNF341 ID3 NR2F6 ZNF652 RNU6-910P SLC51A TM4SF19-AS1 TM4SF19-TCTEX1D2
GH03F196320 0.3 FANTOM5 0.8 +2.5 2547 0.3 SMAD5 NR2F1 ZBED1 POLR2H JUND POLR2A MYNN ID3 NR2F6 TM4SF19 TM4SF19-AS1 TM4SF19-TCTEX1D2
GH03F196321 0.2 Ensembl 0.8 +3.1 3063 0.4 NCOR1 POLR2A SMAD5 ZBED1 ZEB2 ZBTB33 ZNF83 TM4SF19 TM4SF19-AS1 TM4SF19-TCTEX1D2
GH03F196327 0.2 Ensembl 0.4 +9.2 9171 0.2 SCRT2 TM4SF19 TM4SF19-AS1 TM4SF19-TCTEX1D2
GH03F196336 0.6 ENCODE 0.3 +18.3 18347 0.5 BRD4 ZNF639 ATF1 PKNOX1 RFX1 L3MBTL2 SMAD5 BACH1 POLR2A CREM TM4SF19-TCTEX1D2 TM4SF19-AS1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around TM4SF19-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for TM4SF19-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001383799 -430 2201 ARNT CREB3L1 ARID4B SIN3A DMAP1 ZNF2 ZNF766 ZNF207 ZNF548 MCM3

Genomic Location for TM4SF19-AS1 Gene

Chromosome:
3
Start:
196,318,330 bp from pter
End:
196,325,570 bp from pter
Size:
7,241 bases
Orientation:
Plus strand

Genomic View for TM4SF19-AS1 Gene

Genes around TM4SF19-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TM4SF19-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TM4SF19-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TM4SF19-AS1 Gene

Proteins for TM4SF19-AS1 Gene

Post-translational modifications for TM4SF19-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TM4SF19-AS1 Gene

Domains & Families for TM4SF19-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TM4SF19-AS1 Gene

Function for TM4SF19-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TM4SF19-AS1 Gene

Localization for TM4SF19-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TM4SF19-AS1 Gene

Pathways & Interactions for TM4SF19-AS1 Gene

SuperPathways for TM4SF19-AS1 Gene

No Data Available

Interacting Proteins for TM4SF19-AS1 Gene

Gene Ontology (GO) - Biological Process for TM4SF19-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TM4SF19-AS1 Gene

Transcripts for TM4SF19-AS1 Gene

mRNA/cDNA for TM4SF19-AS1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TM4SF19-AS1 Gene

No ASD Table

Relevant External Links for TM4SF19-AS1 Gene

GeneLoc Exon Structure for
TM4SF19-AS1
ECgene alternative splicing isoforms for
TM4SF19-AS1

Expression for TM4SF19-AS1 Gene

mRNA expression in normal human tissues for TM4SF19-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TM4SF19-AS1 Gene

This gene is overexpressed in Testis (x10.3) and Adipose - Subcutaneous (x4.7).
genes like me logo Genes that share expression patterns with TM4SF19-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TM4SF19-AS1 Gene

Orthologs for TM4SF19-AS1 Gene

Evolution for TM4SF19-AS1 Gene

ENSEMBL:
Gene Tree for TM4SF19-AS1 (if available)
TreeFam:
Gene Tree for TM4SF19-AS1 (if available)

No data available for Orthologs for TM4SF19-AS1 Gene

Paralogs for TM4SF19-AS1 Gene

No data available for Paralogs for TM4SF19-AS1 Gene

Variants for TM4SF19-AS1 Gene

Sequence variations from dbSNP and Humsavar for TM4SF19-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs10571514 -- 196,320,128(+) AAAAA(-/A)TTCTG intron-variant, upstream-variant-2KB
rs111443825 -- 196,317,416(+) GATCT(C/T)ACAAA intron-variant, nc-transcript-variant, upstream-variant-2KB
rs111713120 -- 196,317,515(+) GATCT(C/T)ACAAA intron-variant, nc-transcript-variant, upstream-variant-2KB
rs111770664 -- 196,320,050(+) GAGTC(A/G)GAGCT intron-variant, upstream-variant-2KB
rs111837664 -- 196,316,907(+) TGTGT(-/GTTGTGTG)GTGTG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for TM4SF19-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2759213 CNV gain+loss 17122850
esv3599280 CNV loss 21293372
nsv1009811 CNV gain 25217958
nsv4183 CNV deletion 18451855
nsv593071 CNV gain 21841781
nsv997797 CNV gain 25217958

Relevant External Links for TM4SF19-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TM4SF19-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TM4SF19-AS1 Gene

Disorders for TM4SF19-AS1 Gene

Relevant External Links for TM4SF19-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TM4SF19-AS1

No disorders were found for TM4SF19-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TM4SF19-AS1 Gene

Publications for TM4SF19-AS1 Gene

No publications were found for TM4SF19-AS1 Gene.

Products for TM4SF19-AS1 Gene

Sources for TM4SF19-AS1 Gene

Content
Loading form....