Free for academic non-profit institutions. Other users need a Commercial license

Aliases for TM4SF1-AS1 Gene

Subcategory (RNA class) for TM4SF1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for TM4SF1-AS1 Gene

  • TM4SF1 Antisense RNA 1 2 3 5
  • TM4SF1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for TM4SF1-AS1 Gene

Previous GeneCards Identifiers for TM4SF1-AS1 Gene

  • GC00U933309
  • GC03P149096

Summaries for TM4SF1-AS1 Gene

GeneCards Summary for TM4SF1-AS1 Gene

TM4SF1-AS1 (TM4SF1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TM4SF1-AS1 Gene

Genomics for TM4SF1-AS1 Gene

Regulatory Elements for TM4SF1-AS1 Gene

Enhancers for TM4SF1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F149414 1 Ensembl ENCODE 11.8 +37.2 37232 1.4 ELF3 PKNOX1 RARA ZNF366 CREM HMG20B SP5 CEBPB MIER2 PPARG TM4SF1 TM4SF1-AS1 TM4SF18 LOC105374151 RPL32P8
GH03F149419 0.4 Ensembl 11.8 +41.6 41623 0.4 ZNF639 INSM2 FEZF1 EBF1 BCL11B CTBP1 BCL11A KLF8 WT1 TRIM28 TM4SF1 TM4SF1-AS1 TM4SF18 LOC105374151 RPL32P8
GH03F149352 0.9 Ensembl ENCODE 11.6 -25.1 -25130 1.1 ELF3 WRNIP1 ARID4B DMAP1 ZNF48 DNMT3B ZNF2 RAD21 YY1 RCOR1 TM4SF1 TM4SF1-AS1 GC03M149358 TM4SF18
GH03F149338 1.1 FANTOM5 Ensembl ENCODE 11.6 -36.8 -36781 5.6 ELF3 TBP SIN3A RAD21 RFX5 ELK1 ZNF366 RCOR1 FOS DEK TM4SF1 TM4SF1-AS1 HPS3 TM4SF18 GC03M149358
GH03F149355 0.8 ENCODE 11.5 -21.3 -21326 2.4 ELF3 TBP ATF1 MLX ARID4B DMAP1 THRB ZNF48 ZSCAN9 RAD21 TM4SF1 TM4SF1-AS1 TM4SF18 GC03M149358
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around TM4SF1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TM4SF1-AS1 Gene

149,377,778 bp from pter
149,386,583 bp from pter
8,806 bases
Plus strand

Genomic View for TM4SF1-AS1 Gene

Genes around TM4SF1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TM4SF1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TM4SF1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TM4SF1-AS1 Gene

Proteins for TM4SF1-AS1 Gene

Post-translational modifications for TM4SF1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TM4SF1-AS1 Gene

Domains & Families for TM4SF1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TM4SF1-AS1 Gene

Function for TM4SF1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TM4SF1-AS1 Gene

Localization for TM4SF1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TM4SF1-AS1 Gene

Pathways & Interactions for TM4SF1-AS1 Gene

SuperPathways for TM4SF1-AS1 Gene

No Data Available

Interacting Proteins for TM4SF1-AS1 Gene

Gene Ontology (GO) - Biological Process for TM4SF1-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for TM4SF1-AS1 Gene

Transcripts for TM4SF1-AS1 Gene

mRNA/cDNA for TM4SF1-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TM4SF1-AS1 Gene

No ASD Table

Relevant External Links for TM4SF1-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for TM4SF1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TM4SF1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TM4SF1-AS1 Gene

This gene is overexpressed in Minor Salivary Gland (x9.8), Pancreas (x5.6), and Breast - Mammary Tissue (x5.3).
genes like me logo Genes that share expression patterns with TM4SF1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TM4SF1-AS1 Gene

Orthologs for TM4SF1-AS1 Gene

Evolution for TM4SF1-AS1 Gene

Gene Tree for TM4SF1-AS1 (if available)
Gene Tree for TM4SF1-AS1 (if available)

No data available for Orthologs for TM4SF1-AS1 Gene

Paralogs for TM4SF1-AS1 Gene

No data available for Paralogs for TM4SF1-AS1 Gene

Variants for TM4SF1-AS1 Gene

Sequence variations from dbSNP and Humsavar for TM4SF1-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs10709529 -- 149,384,798(+) AAAAT(-/A)AAAAA intron-variant
rs10804736 -- 149,379,723(+) GAGGC(C/T)GAGGC intron-variant, upstream-variant-2KB
rs10804737 -- 149,379,836(+) ctgta(A/G)tccca intron-variant, upstream-variant-2KB
rs10935749 -- 149,381,788(+) AACCC(A/G)GCTGA intron-variant
rs111575786 -- 149,386,883(+) TGTGT(-/GT)GTGTG downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for TM4SF1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv1009027 CNV insertion 20482838
esv1202095 CNV insertion 17803354
nsv512814 CNV insertion 21212237
nsv998572 CNV loss 25217958

Relevant External Links for TM4SF1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TM4SF1-AS1 Gene

Disorders for TM4SF1-AS1 Gene

Relevant External Links for TM4SF1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for TM4SF1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TM4SF1-AS1 Gene

Publications for TM4SF1-AS1 Gene

  1. A transcriptional sketch of a primary human breast cancer by 454 deep sequencing. (PMID: 19379481) Guffanti A. … De Bellis G. (BMC Genomics 2009) 3 64

Products for TM4SF1-AS1 Gene

Sources for TM4SF1-AS1 Gene

Loading form....