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Aliases for TM4SF1-AS1 Gene

Subcategory (RNA class) for TM4SF1-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for TM4SF1-AS1 Gene

  • TM4SF1 Antisense RNA 1 2 3
  • TM4SF1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for TM4SF1-AS1 Gene

ORGUL Members for TM4SF1-AS1 Gene

Summaries for TM4SF1-AS1 Gene

GeneCards Summary for TM4SF1-AS1 Gene

TM4SF1-AS1 (TM4SF1 Antisense RNA 1) is a RNA Gene, and belongs to antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TM4SF1-AS1 Gene

Genomics for TM4SF1-AS1 Gene

Genomic Location for TM4SF1-AS1 Gene

Start:
149,377,778 bp from pter
End:
149,386,583 bp from pter
Size:
8,806 bases
Orientation:
Plus strand

Genomic View for TM4SF1-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TM4SF1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TM4SF1-AS1 Gene

No data available for Regulatory Elements for TM4SF1-AS1 Gene

Proteins for TM4SF1-AS1 Gene

Post-translational modifications for TM4SF1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TM4SF1-AS1 Gene

Domains for TM4SF1-AS1 Gene

Gene Families for TM4SF1-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs
genes like me logo Genes that share domains with TM4SF1-AS1: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for TM4SF1-AS1 Gene

Function for TM4SF1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TM4SF1-AS1 Gene

Localization for TM4SF1-AS1 Gene

No data available for Gene Ontology (GO) - Cellular Components for TM4SF1-AS1 Gene

Pathways for TM4SF1-AS1 Gene

SuperPathways for TM4SF1-AS1 Gene

No Data Available

Interacting Proteins for TM4SF1-AS1 Gene

Gene Ontology (GO) - Biological Process for TM4SF1-AS1 Gene

None

No data available for Pathways by source for TM4SF1-AS1 Gene

Transcripts for TM4SF1-AS1 Gene

mRNA/cDNA for TM4SF1-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TM4SF1-AS1 Gene

No ASD Table

Relevant External Links for TM4SF1-AS1 Gene

GeneLoc Exon Structure for
TM4SF1-AS1
ECgene alternative splicing isoforms for
TM4SF1-AS1

Expression for TM4SF1-AS1 Gene

mRNA expression in normal human tissues for TM4SF1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TM4SF1-AS1 Gene

This gene is overexpressed in Minor Salivary Gland (9.8), Pancreas (5.6), and Breast - Mammary Tissue (5.3).
genes like me logo Genes that share expressions with TM4SF1-AS1: view

Orthologs for TM4SF1-AS1 Gene

Evolution for TM4SF1-AS1 Gene

ENSEMBL:
Gene Tree for TM4SF1-AS1 (if available)
TreeFam:
Gene Tree for TM4SF1-AS1 (if available)

No data available for Orthologs for TM4SF1-AS1 Gene

Paralogs for TM4SF1-AS1 Gene

No data available for Paralogs for TM4SF1-AS1 Gene

Variants for TM4SF1-AS1 Gene

Sequence variations from dbSNP and Humsavar for TM4SF1-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type MAF
rs2004107 -- 149,384,024(-) ATTAT(A/G)GTTCC intron-variant
rs2004108 -- 149,383,988(-) CTGCC(C/T)GGTCC intron-variant
rs2059989 -- 149,386,891(+) gtgtg(A/T)gtgag downstream-variant-500B
rs2059990 -- 149,386,893(+) gtgtg(A/T)gagag downstream-variant-500B
rs2059991 -- 149,387,062(+) TGATG(C/T)GGGAG downstream-variant-500B

Relevant External Links for TM4SF1-AS1 Gene

HapMap Linkage Disequilibrium report
TM4SF1-AS1

No data available for Structural Variations from Database of Genomic Variants (DGV) for TM4SF1-AS1 Gene

Disorders for TM4SF1-AS1 Gene

No disorders were found for TM4SF1-AS1 Gene.

No data available for UniProtKB/Swiss-Prot for TM4SF1-AS1 Gene

Publications for TM4SF1-AS1 Gene

  1. A transcriptional sketch of a primary human breast cancer by 454 deep sequencing. (PMID: 19379481) Guffanti A. … De Bellis G. (BMC Genomics 2009) 3

Products for TM4SF1-AS1 Gene

Sources for TM4SF1-AS1 Gene

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