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Aliases for TM4SF1-AS1 Gene

Subcategory (RNA class) for TM4SF1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TM4SF1-AS1 Gene

  • TM4SF1 Antisense RNA 1 2 3 5
  • TM4SF1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for TM4SF1-AS1 Gene

Previous GeneCards Identifiers for TM4SF1-AS1 Gene

  • GC00U933309
  • GC03P149096

Summaries for TM4SF1-AS1 Gene

GeneCards Summary for TM4SF1-AS1 Gene

TM4SF1-AS1 (TM4SF1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TM4SF1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TM4SF1-AS1 Gene

Genomics for TM4SF1-AS1 Gene

Regulatory Elements for TM4SF1-AS1 Gene

Enhancers for TM4SF1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03H149338 1.7 FANTOM5 Ensembl ENCODE dbSUPER 11.6 -36.8 -36803 5 ELF3 TBP FOXA2 SIN3A RAD21 RFX5 ELK1 ZNF366 RCOR1 FOS TM4SF1 TM4SF1-AS1 HPS3 TM4SF18 GC03M149358
GH03H149297 1.5 Ensembl ENCODE dbSUPER 11.1 -77.8 -77783 4 PKNOX1 FOXA2 ATF1 ARID4B SIN3A FEZF1 BRCA1 ZNF2 YY1 SLC30A9 TM4SF18 TM4SF1 TM4SF1-AS1 CP CPHL1P
GH03H149352 1.4 Ensembl ENCODE dbSUPER 11.6 -25.1 -25130 1 ELF3 HDGF FOXA2 ARID4B DMAP1 ZNF2 RAD21 YY1 ZNF143 RCOR1 TM4SF1 TM4SF1-AS1 GC03M149358 TM4SF18
GH03H149442 1.3 Ensembl ENCODE dbSUPER 11.5 +65.6 65590 1 RB1 JUN BACH1 BMI1 FOS ATF7 IKZF2 CHD2 ZNF687 TRIM22 TM4SF4 TM4SF1-AS1 TM4SF1 TM4SF18 GC03M149445 RPL32P8
GH03H149447 1.3 Ensembl ENCODE dbSUPER 11.5 +71.6 71564 2 JUN MAX RFX5 ZNF316 GATA3 FOS NFE2 ATF7 MAFK NFE2L2 TM4SF4 TM4SF1 TM4SF1-AS1 TM4SF18 GC03M149445 FKBP1AP4
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TM4SF1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TM4SF1-AS1 Gene

Chromosome:
3
Start:
149,377,778 bp from pter
End:
149,386,583 bp from pter
Size:
8,806 bases
Orientation:
Plus strand

Genomic View for TM4SF1-AS1 Gene

Genes around TM4SF1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TM4SF1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TM4SF1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TM4SF1-AS1 Gene

Proteins for TM4SF1-AS1 Gene

Post-translational modifications for TM4SF1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TM4SF1-AS1 Gene

Domains & Families for TM4SF1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TM4SF1-AS1 Gene

Function for TM4SF1-AS1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for TM4SF1-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TM4SF1-AS1 Gene

Localization for TM4SF1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TM4SF1-AS1 Gene

Pathways & Interactions for TM4SF1-AS1 Gene

SuperPathways for TM4SF1-AS1 Gene

No Data Available

Interacting Proteins for TM4SF1-AS1 Gene

Gene Ontology (GO) - Biological Process for TM4SF1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TM4SF1-AS1 Gene

Drugs & Compounds for TM4SF1-AS1 Gene

No Compound Related Data Available

Transcripts for TM4SF1-AS1 Gene

mRNA/cDNA for TM4SF1-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for TM4SF1-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for TM4SF1-AS1 Gene

No ASD Table

Relevant External Links for TM4SF1-AS1 Gene

GeneLoc Exon Structure for
TM4SF1-AS1
ECgene alternative splicing isoforms for
TM4SF1-AS1

Expression for TM4SF1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TM4SF1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TM4SF1-AS1 Gene

This gene is overexpressed in Minor Salivary Gland (x9.8), Pancreas (x5.6), and Breast - Mammary Tissue (x5.3).
genes like me logo Genes that share expression patterns with TM4SF1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TM4SF1-AS1 Gene

Orthologs for TM4SF1-AS1 Gene

Evolution for TM4SF1-AS1 Gene

ENSEMBL:
Gene Tree for TM4SF1-AS1 (if available)
TreeFam:
Gene Tree for TM4SF1-AS1 (if available)

No data available for Orthologs for TM4SF1-AS1 Gene

Paralogs for TM4SF1-AS1 Gene

No data available for Paralogs for TM4SF1-AS1 Gene

Variants for TM4SF1-AS1 Gene

Sequence variations from dbSNP and Humsavar for TM4SF1-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000220682 -- 149,383,856(+) ACCAG(G/T)CCAGG intron-variant
rs1000322759 -- 149,379,041(+) GAGGG(C/T)GGGAC intron-variant, upstream-variant-2KB
rs1000512158 -- 149,386,922(+) AGAAC(A/G)AGTGA downstream-variant-500B
rs1000544177 -- 149,375,779(+) TTAGG(A/G)AACAA intron-variant, upstream-variant-2KB
rs1000582001 -- 149,385,331(+) AGATT(C/T)GGGGA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TM4SF1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv1009027 CNV insertion 20482838
esv1202095 CNV insertion 17803354
nsv512814 CNV insertion 21212237
nsv998572 CNV loss 25217958

Relevant External Links for TM4SF1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TM4SF1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TM4SF1-AS1 Gene

Disorders for TM4SF1-AS1 Gene

Relevant External Links for TM4SF1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TM4SF1-AS1

No disorders were found for TM4SF1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TM4SF1-AS1 Gene

Publications for TM4SF1-AS1 Gene

  1. A transcriptional sketch of a primary human breast cancer by 454 deep sequencing. (PMID: 19379481) Guffanti A … De Bellis G (BMC genomics 2009) 3 60

Products for TM4SF1-AS1 Gene

Sources for TM4SF1-AS1 Gene

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