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Aliases for TM2D3 Gene

Aliases for TM2D3 Gene

  • TM2 Domain Containing 3 2 3
  • BLP2 3 4 6
  • Beta-Amyloid-Binding Protein-Like Protein 2 3 4
  • BBP-Like Protein 2 3 4
  • TM2 Domain-Containing Protein 3 3

External Ids for TM2D3 Gene

Summaries for TM2D3 Gene

Entrez Gene Summary for TM2D3 Gene

  • The protein encoded by this gene contains a structural module related to that of the seven transmembrane domain G protein-coupled receptor superfamily. This protein has sequence and structural similarities to the beta-amyloid binding protein (BBP), but, unlike BBP, it does not regulate a response to beta-amyloid peptide. This protein may have regulatory roles in cell death or proliferation signal cascades. Several alternatively spliced transcript variants of this gene are described but the full length nature of some variants has not been determined. Multiple polyadenylation sites have been found in this gene. [provided by RefSeq, Jul 2008]

GeneCards Summary for TM2D3 Gene

TM2D3 (TM2 Domain Containing 3) is a Protein Coding gene. An important paralog of this gene is TM2D1.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TM2D3 Gene

Genomics for TM2D3 Gene

Genomic Location for TM2D3 Gene

Start:
101,621,444 bp from pter
End:
101,652,793 bp from pter
Size:
31,350 bases
Orientation:
Minus strand

Genomic View for TM2D3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TM2D3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TM2D3 Gene

Regulatory Elements for TM2D3 Gene

Proteins for TM2D3 Gene

  • Protein details for TM2D3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BRN9-TM2D3_HUMAN
    Recommended name:
    TM2 domain-containing protein 3
    Protein Accession:
    Q9BRN9
    Secondary Accessions:
    • B2RDK9
    • Q9H046
    • Q9H651

    Protein attributes for TM2D3 Gene

    Size:
    247 amino acids
    Molecular mass:
    27118 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for TM2D3 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TM2D3 Gene

Proteomics data for TM2D3 Gene at MOPED

Post-translational modifications for TM2D3 Gene

  • Modification sites at PhosphoSitePlus
  • Glycosylation at Thr46, Asn87, Asn140, Asn157, and Asn169

No data available for DME Specific Peptides for TM2D3 Gene

Domains for TM2D3 Gene

Protein Domains for TM2D3 Gene

InterPro:
Blocks:
ProtoNet:

UniProtKB/Swiss-Prot:

TM2D3_HUMAN
Family:
  • Belongs to the TM2 family.:
    • Q9BRN9
genes like me logo Genes that share domains with TM2D3: view

No data available for Gene Families for TM2D3 Gene

Function for TM2D3 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TM2D3 Gene

Localization for TM2D3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TM2D3 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TM2D3 Gene COMPARTMENTS Subcellular localization image for TM2D3 gene
Compartment Confidence
extracellular 2
plasma membrane 2
cytosol 1
lysosome 1
mitochondrion 1
nucleus 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for TM2D3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with TM2D3: view

Pathways for TM2D3 Gene

SuperPathways for TM2D3 Gene

No Data Available

Interacting Proteins for TM2D3 Gene

Gene Ontology (GO) - Biological Process for TM2D3 Gene

None

No data available for Pathways by source for TM2D3 Gene

Transcripts for TM2D3 Gene

Unigene Clusters for TM2D3 Gene

TM2 domain containing 3:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TM2D3 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4a · 4b ^ 5a · 5b · 5c ^ 6a · 6b · 6c ^ 7a · 7b ^ 8a · 8b · 8c
SP1: - - - - - -
SP2: - - - - - - -
SP3: - -
SP4: -
SP5: - - - - -
SP6: - - -
SP7: - -
SP8: - - - -
SP9:

Relevant External Links for TM2D3 Gene

GeneLoc Exon Structure for
TM2D3
ECgene alternative splicing isoforms for
TM2D3

Expression for TM2D3 Gene

mRNA expression in normal human tissues for TM2D3 Gene

Integrated Proteomics: protein expression from ProteomicsDB, MOPED, and MaxQB for TM2D3 Gene

SOURCE GeneReport for Unigene cluster for TM2D3 Gene Hs.288912

mRNA Expression by UniProt/SwissProt for TM2D3 Gene

Q9BRN9-TM2D3_HUMAN
Tissue specificity: Widely expressed.
genes like me logo Genes that share expressions with TM2D3: view

Orthologs for TM2D3 Gene

This gene was present in the common ancestor of animals.

Orthologs for TM2D3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TM2D3 36
  • 98.65 (n)
  • 98.38 (a)
TM2D3 37
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia TM2D3 37
  • 76 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TM2D3 36
  • 88.39 (n)
  • 93.12 (a)
TM2D3 37
  • 93 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Tm2d3 36
  • 84.89 (n)
  • 87.04 (a)
Tm2d3 16
Tm2d3 37
  • 82 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia TM2D3 37
  • 73 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TM2D3 37
  • 74 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Tm2d3 36
  • 85.56 (n)
  • 86.64 (a)
chicken
(Gallus gallus)
Aves TM2D3 36
  • 73.89 (n)
  • 78.75 (a)
TM2D3 37
  • 74 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia TM2D3 37
  • 67 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.19592 36
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.3843 36
tm2d3 36
  • 68.73 (n)
  • 69.83 (a)
zebrafish
(Danio rerio)
Actinopterygii tm2d3 36
  • 65.04 (n)
  • 71.2 (a)
tm2d3 37
  • 55 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP006109 36
  • 56.18 (n)
  • 52.25 (a)
fruit fly
(Drosophila melanogaster)
Insecta amx 36
  • 56.7 (n)
  • 54.6 (a)
amx 37
  • 35 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea C41D11.9 36
  • 50.21 (n)
  • 48.1 (a)
C41D11.9 37
  • 41 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea CSA.6955 37
  • 70 (a)
OneToOne
Species with no ortholog for TM2D3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for TM2D3 Gene

ENSEMBL:
Gene Tree for TM2D3 (if available)
TreeFam:
Gene Tree for TM2D3 (if available)

Paralogs for TM2D3 Gene

Paralogs for TM2D3 Gene

Pseudogenes.org Pseudogenes for TM2D3 Gene

genes like me logo Genes that share paralogs with TM2D3: view

Variants for TM2D3 Gene

Sequence variations from dbSNP and Humsavar for TM2D3 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type MAF
rs474596 -- 101,653,141(-) AGACC(A/G)CGGAA upstream-variant-2KB
rs479132 -- 101,635,266(-) TTTCC(A/G)TCTGA intron-variant
rs479913 -- 101,643,133(-) AATAT(A/T)GTTTC intron-variant
rs490687 -- 101,639,170(-) GTAGT(C/G)ATGCT intron-variant
rs498151 -- 101,638,341(-) ctcca(A/G)cctgg intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TM2D3 Gene

Variant ID Type Subtype PubMed ID
nsv457293 CNV Gain 19166990
dgv113e55 CNV Gain 17911159
dgv2452n71 CNV Gain 21882294
dgv2453n71 CNV Gain 21882294
nsv528761 CNV Gain 19592680
dgv2454n71 CNV Gain 21882294

Relevant External Links for TM2D3 Gene

HapMap Linkage Disequilibrium report
TM2D3

Disorders for TM2D3 Gene

No disorders were found for TM2D3 Gene.

No data available for UniProtKB/Swiss-Prot for TM2D3 Gene

Publications for TM2D3 Gene

  1. Beta-amyloid peptide-induced apoptosis regulated by a novel protein containing a G protein activation module. (PMID: 11278849) Kajkowski E.M. … Ozenberger B.A. (J. Biol. Chem. 2001) 2 3 4
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. Cis- and trans-acting gene regulation is associated with osteoarthritis. (PMID: 16642435) Mahr S. … MA1ller B. (Am. J. Hum. Genet. 2006) 3
  4. Charting the landscape of tandem BRCT domain-mediated protein interactions. (PMID: 22990118) Woods N.T. … Monteiro A.N. (Sci Signal 2012) 3
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4

Products for TM2D3 Gene

Sources for TM2D3 Gene

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