 |
 | Services
| |
 |
Aliases & Descriptions for TLR9
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| | | Descriptions |
|---|
| CD289 antigen 3 | | toll-like receptor 9 2 |
|
| | Search outside databases for aliases for TLR9 genePrevious GC identifers: GC03M051347 GC03M051507 GC03M052111 GC03M052213 |
Summaries for TLR9(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for TLR9: The protein encoded by this gene is a member of the Toll-like receptor (TLR) family which plays a fundamental role in pathogen recognition and activation of innate immunity. TLRs are highly conserved from Drosophila to humans and share structural and functional similarities. They recognize pathogen-associated molecular patterns (PAMPs) that are expressed on infectious agents, and mediate the production of cytokines necessary for the development of effective immunity. The various TLRs exhibit different patterns of expression. This gene is preferentially expressed in immune cell rich tissues, such as spleen, lymph node, bone marrow and peripheral blood leukocytes. Studies in mice and human indicate that this receptor mediates cellular response to unmethylated CpG dinucleotides in bacterial DNA to mount an innate immune response. [provided by RefSeq] UniProtKB/Swiss-Prot: TLR9_HUMAN, Q9NR96Function: Participates in the innate immune response to microbial agents. Detects the unmethylated cytidine-phosphate-guanosine (CpG) motifs present in bacterial DNA. Acts via MYD88 and TRAF6, leading to NF-kappa-B activation, cytokine secretion and the inflammatory responseGene Wiki entry for TLR9 |
Genomic Location for TLR9
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the TLR9 gene 
Entrez Gene cytogenetic band: 3p21.3 Ensembl cytogenetic band: 3p21.1 HGNC cytogenetic band: 3p21.3TLR9 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 3 GeneLoc Exon Structure GeneLoc location for GC03M052230:
(about GC identifiers)
Start:
|
52,230,138 bp from pter |
End:
|
52,235,219 bp from pter |
Size:
|
5,082 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000003.10 NT_022517.17
| Proteins for TLR9
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: TLR9_HUMAN, Q9NR96 (See
protein sequence)Recommended Name: Toll-like receptor 9 precursor Size: 1032 amino acids; 115860 Da
Subunit: Binds MYD88 via their respective TIR domains (By similarity)
Subcellular location: Membrane; Single-pass type I membrane protein (By similarity)
Secondary accessions: B3Y661 Q6UVZ2 Q9HD68 Q9HD69 Q9HD70 Q9NYC2 Q9NYC3Alternative splicing: 5 isoforms: Q9NR96-1 Q9NR96-2 Q9NR96-3 Q9NR96-4 Q9NR96-5 (Additional isoforms seem to exist)REFSEQ proteins: NP_059138.1
ENSEMBL proteins: ENSP00000353874
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
4 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for TLR9:  | Invitrogen Antibodies for TLR9 |  | Millipore Mono- and Polyclonal Antibodies for the study of TLR9 |  | Sigma-Aldrich Antibodies for TLR9 |  | R&D Systems Antibodies for TLR9 |  | Antibodies from Abcam (TLR9), each with their AbpromiseSM |  | Monoclonal and Polyclonal Antibodies from Abnova (TLR9) |  | Novus Biologicals Antibodies for TLR9 |
Assays for TLR9: | Protein
Domains/ Families for TLR9(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q9NR96
ProtoNet protein and cluster: Q9NR96 1 Blocks protein family: IPB000157 TIR domain
UniProtKB/Swiss-Prot: TLR9_HUMAN, Q9NR96Similarity: Belongs to the Toll-like receptor familySimilarity: Contains 26 LRR (leucine-rich) repeatsSimilarity: Contains 1 TIR domain | Gene Function for TLR9
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|                OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_138688
Applied Biosystems Silencer® siRNAs for TLR9
Sigma-Aldrich siRNA and siRNA Panels for TLR9  Sigma-Aldrich shRNA for TLR9  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_017442                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_017442                                  untagged cDNA clones in CMV expression vector (see all 2): NM_017442 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_017442
UniProtKB/Swiss-Prot: TLR9_HUMAN, Q9NR96Function: Participates in the innate immune response to microbial agents. Detects the unmethylated cytidine-phosphate-guanosine (CpG) motifs present in bacterial DNA. Acts via MYD88 and TRAF6, leading to NF-kappa-B activation, cytokine secretion and the inflammatory response5 MGI mutant phenotypes (inferred from 6 alleles ) (MGI details for Tlr9):
3 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for TLR9
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
5 Sigma-Aldrich "Your Favorite Gene" Pathways for TLR9 (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for TLR9 
5/98 Interacting proteins for TLR9 (ENSP000003538743 Q9NR961) via UniProtKB, MINT, and/or STRING (see all 98
)About this table
5/9 Gene Ontology (GO) biological process terms (links to tree view) (see all 9
): About this table
|
Drugs & Compounds for TLR9(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for TLR9 10/21 Novoseek chemical compound relationships for TLR9 gene (see all 21
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| loxoribine |
81.69 |
1 |
15778362 (1) |
| resiquimod |
80.16 |
5 |
19183807 (1), 15827165 (1), 15778362 (1) |
| poly(i-c) |
67.36 |
1 |
16299289 (1) |
| phosphorothioate |
65.96 |
19 |
18342006 (3), 15634876 (1), 15879106 (1), 16421948 (1) |
| flagellin |
61.58 |
10 |
17586660 (2), 18256754 (1), 18571707 (1), 18819410 (1) (see all 7) |
| lipoteichoic acid |
61.41 |
2 |
18571707 (1), 16175622 (1) |
| phosphodiester |
55.55 |
25 |
16421948 (5), 18342006 (3), 18656540 (3), 17382246 (1) (see all 6) |
| peptidoglycan |
48.73 |
7 |
19127075 (1), 14996826 (1), 16818783 (1), 16133988 (1) (see all 6) |
| hemozoin |
35.27 |
5 |
17261807 (3), 15950450 (1) |
| oligonucleotide |
32.95 |
16 |
18922969 (2), 16818518 (2), 16864658 (1), 17487373 (1) (see all 9) |
About this table
|
Transcripts for TLR9(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|                OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_138688
Sigma-Aldrich siRNA and siRNA Panels for TLR9  Sigma-Aldrich shRNA for TLR9  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_017442 REFSEQ mRNAs for TLR9 gene: NM_017442.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_017442               OriGene GFP tagged cDNA clone in CMV expression vector: NM_017442                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_017442                                  untagged cDNA clones in CMV expression vector (see all 2): NM_017442  Additional cDNA sequence: AB045180.1 AB445673.1 AF245704.1 AF246972.1 AF259262.1 AF259263.1 AY359085.1 BC032713.1 2 DOTS entries: DT.86821044 DT.95264846 24/543 AceView cDNA sequences (see all 543
):F09954 CB270332 BM456154 AL136773 BQ680020 CR533520 CR590947 BM553855 CD367456 BM808377 CA425086 AI090271 CA424627 AF246974 AA832220 CB529943 BQ678080 AB045180 CR596947 CR603095 CR607625 CR606881 AF245704 CD624013
highest scoring ESTs for TLR9:AB045180 AF245704 AF259262 AL558896 AL560131 BC032713 BE245817 BM459189 CD628235 CD628237 Unigene Cluster for TLR9: Toll-like receptor 9 Hs.87968 [show with all ESTs]Unigene Representative Sequence: NM_017442
GeneLoc Exon Structure
5 Alternative Splicing Database (ASD) splice patterns (SP) for TLR9
| ExUns: | 1 | ^ | 2 | ^ | 3a | · | 3b | ^ | 4 | ^ | 5 | ^ | 6 | ^ | 7 | ^ | 8a | · | 8b | ^ | 9 | ^ | 10a | · | 10b | ^ | 11a | · | 11b | · | 11c | · | 11d | |
| SP1: | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | - |   | |   | - |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | - |   | - |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for TLR9
1 Ensembl transcript including schematic representation: ENST00000360658
|
Expression for TLR9
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| TLR9 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for TLR9
1 / 2 / 3 2 probe-sets matching TLR9 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: --
SOURCE GeneReport for Unigene cluster: Hs.87968 UniProtKB/Swiss-Prot: TLR9_HUMAN, Q9NR96Tissue specificity: Highly expressed in spleen, lymph node, tonsil and peripheral blood leukocytes, especially in plasmacytoid pre-dendritic cells. Levels are much lower in monocytes and CD11c+ immature dendritic cells. Also detected in lung and liver |
Orthologs for TLR9
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for TLR9 gene from 5/6 species (see all 6
)
About this table Species with no ortholog for TLR9
ENSEMBL Gene Tree for TLR9 | Paralogs for TLR9(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for TLR9 gene
- TLR72 TLR32 TLR52 TLR82
|
SNPs/Variants for TLR9(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for TLR9 (up to first 250kb)
|
Disorders & Mutations for TLR9
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 605474
10/44 Novoseek disease relationships for TLR9 gene (see all 44
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| lupus erythematosus systemic |
54.85 |
20 |
17516623 (2), 18613842 (1), 18262306 (1), 18373699 (1) (see all 13) |
| autoimmune diseases |
45.47 |
12 |
17961163 (2), 18513998 (2), 18613842 (1), 18208876 (1) (see all 9) |
| autoimmunity |
44.77 |
1 |
12740574 (1) |
| infectious disease |
39.96 |
5 |
16365416 (1), 17854429 (1), 17330401 (1), 18457466 (1) (see all 5) |
| virus infection |
37.06 |
7 |
15592841 (2), 17360657 (1), 19129482 (1), 17085599 (1) (see all 6) |
| inflammation |
36.34 |
7 |
14632662 (1), 19129482 (1), 15843514 (1), 17145922 (1) (see all 7) |
| necrosis |
33.75 |
10 |
16510559 (1), 14688201 (1), 15507621 (1), 18922969 (1) (see all 9) |
| allergy |
33.26 |
2 |
16164440 (1), 18071654 (1) |
| herpes simplex |
31.56 |
6 |
17085599 (2), 19025601 (1), 18082566 (1), 11927638 (1) (see all 5) |
| asthma allergic |
29.42 |
1 |
14987294 (1) |
About this table
Human Gene Mutation Database: TLR9 Genetic Association Database: TLR9 Human Genome Epidemiology Navigator: TLR9 (46 documents)
|
Medical News for TLR9(Possibly Related Articles in
Doctor's Guide)
About This Section
| |
Publications for TLR9 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/466 PubMed articles for TLR9 gene (see all 466
):- Three novel mammalian Toll-like receptors: gene structure, expression, and evolution. (PubMed id 11022119)1, 2, 3, 4 Du X.... Beutler B. (2000)
- Common human Toll-like receptor 9 polymorphisms and haplotypes: association with atopy and functional relevance. (PubMed id 16164440)1, 3, 6 Berghofer B....Hackstein H. (2005)
- Toll-like receptor (TLR)-9 promotor polymorphisms and atherosclerosis. (PubMed id 16125159)1, 3, 6 Hamann L....Schumann R.R. (2006)
- Genetic polymorphisms of toll-like receptor 9 influence the immune response to CpG and contribute to hyper-IgM in primary biliary cirrhosis. (PubMed id 15878652)1, 3, 6 Kikuchi K....Gershwin M.E. (2005)
- Toll-like receptor (TLR) polymorphisms in African children: Common TLR-4 variants predispose to severe malaria. (PubMed id 16371473)1, 3, 6 Mockenhaupt F.P....Schumann R.R. (2006)
- Association study of Toll-like receptor 9 gene polymorphism in Korean patients with systemic lupus erythematosus. (PubMed id 15730519)1, 3, 6 Hur J.W....Bae S.C. (2005)
- An association study of asthma and total serum immunoglobin E levels for Toll-like receptor polymorphisms in a Japanese population. (PubMed id 14987294)1, 3, 6 Noguchi E....Arinami T. (2004)
- Single-nucleotide polymorphisms in the Toll-like receptor 9 gene (TLR9): frequencies, pairwise linkage disequilibrium, and haplotypes in three U.S. ethnic groups and exploratory case-control disease association studies. (PubMed id 12573264)1, 3, 6 Lazarus R....Weiss S.T. (2003)
- Natural selection in the TLR-related genes in the course of primate evolution. (PubMed id 18810425)3, 4 Nakajima T....Kimura A. (2008)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
|
Search for TLR9
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing TLR9
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing TLR9
(According to HUGE)
About This Section
| -- |
Specialized Databases showing TLR9(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for TLR9(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for TLR9:

 | |
 | | | | |
|
 |  |  |
| | Recombinant Proteins (TLR9) | | Antibodies (TLR9) |
| | | Search Tocris compounds for TLR9 |
|
 |
 | | | |
GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009
|