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Aliases for TLR8-AS1 Gene

Subcategory (RNA class) for TLR8-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TLR8-AS1 Gene

  • TLR8 Antisense RNA 1 2 3 5
  • TLR8 Antisense RNA 1 (Non-Protein Coding) 2 3
  • GS1-324M7.6 3

External Ids for TLR8-AS1 Gene

Summaries for TLR8-AS1 Gene

GeneCards Summary for TLR8-AS1 Gene

TLR8-AS1 (TLR8 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TLR8-AS1 Gene

Genomics for TLR8-AS1 Gene

Regulatory Elements for TLR8-AS1 Gene

Enhancers for TLR8-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XF012889 1.3 FANTOM5 Ensembl ENCODE 18.6 +51.3 51306 5.1 HDGF PKNOX1 TBL1XR1 RAD21 RFX5 YY1 CBX5 ZNF143 CREM ZNF654 TLR8-AS1 TLR7 TLR8 GC0XP012877 GC0XP012878
GH0XF012814 0.5 ENCODE 12.1 +128.7 128664 0.2 CTCF ZNF654 NFYB ZNF143 SMC3 TRIM22 RAD21 TLR8 TLR8-AS1 PSMA6P2 PRPS2
GH0XF013470 0.8 Ensembl ENCODE 11.9 -527.5 -527501 1.6 SIN3A RAD21 GATA2 ZNF654 CEBPB REST SMARCA4 IKZF1 STAT3 ZNF580 TMSB4X TLR8-AS1 TLR8 GC0XP013525 PIR57438
GH0XF013472 1.1 FANTOM5 Ensembl ENCODE 11.9 -530.5 -530481 3.1 CTCF TBL1XR1 SIN3A ASH2L RAD21 POLR2A EGR1 EED ZNF143 CREM TMSB4X TLR8 TLR8-AS1 GC0XP013525 PIR57438
GH0XF012790 0.9 ENCODE 11.8 +151.6 151576 1.9 HDGF TBP KLF17 NFXL1 GLIS2 ZNF391 EGR2 ZNF263 SP3 SP5 TLR8 TLR8-AS1 PRPS2 PSMA6P2
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around TLR8-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TLR8-AS1 Gene

Chromosome:
X
Start:
12,902,817 bp from pter
End:
12,943,300 bp from pter
Size:
40,484 bases
Orientation:
Minus strand

Genomic View for TLR8-AS1 Gene

Genes around TLR8-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TLR8-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TLR8-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TLR8-AS1 Gene

Proteins for TLR8-AS1 Gene

Post-translational modifications for TLR8-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TLR8-AS1 Gene

Domains & Families for TLR8-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TLR8-AS1 Gene

Function for TLR8-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TLR8-AS1 Gene

Localization for TLR8-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TLR8-AS1 Gene

Pathways & Interactions for TLR8-AS1 Gene

SuperPathways for TLR8-AS1 Gene

No Data Available

Interacting Proteins for TLR8-AS1 Gene

Gene Ontology (GO) - Biological Process for TLR8-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TLR8-AS1 Gene

Transcripts for TLR8-AS1 Gene

mRNA/cDNA for TLR8-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TLR8-AS1 Gene

No ASD Table

Relevant External Links for TLR8-AS1 Gene

GeneLoc Exon Structure for
TLR8-AS1
ECgene alternative splicing isoforms for
TLR8-AS1

Expression for TLR8-AS1 Gene

mRNA expression in normal human tissues for TLR8-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TLR8-AS1 Gene

This gene is overexpressed in Whole Blood (x21.6) and Lung (x4.8).

SOURCE GeneReport for Unigene cluster for TLR8-AS1 Gene:

Hs.685035
genes like me logo Genes that share expression patterns with TLR8-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TLR8-AS1 Gene

Orthologs for TLR8-AS1 Gene

Evolution for TLR8-AS1 Gene

ENSEMBL:
Gene Tree for TLR8-AS1 (if available)
TreeFam:
Gene Tree for TLR8-AS1 (if available)

No data available for Orthologs for TLR8-AS1 Gene

Paralogs for TLR8-AS1 Gene

No data available for Paralogs for TLR8-AS1 Gene

Variants for TLR8-AS1 Gene

Sequence variations from dbSNP and Humsavar for TLR8-AS1 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
rs10126504 -- 12,917,457(+) TCACC(A/G)GCCCT intron-variant
rs1013150 -- 12,914,322(+) TGGAA(A/G)ATCCT intron-variant
rs1013151 -- 12,914,412(+) cagaa(C/T)tctct intron-variant
rs10269018 -- 12,940,600(+) GGTGC(C/T)GGTCA intron-variant
rs10568250 -- 12,908,669(+) CATCA(-/AC)AGTTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TLR8-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv2223e212 CNV loss 25503493
esv3573586 CNV loss 25503493

Relevant External Links for TLR8-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TLR8-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TLR8-AS1 Gene

Disorders for TLR8-AS1 Gene

Relevant External Links for TLR8-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TLR8-AS1

No disorders were found for TLR8-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TLR8-AS1 Gene

Publications for TLR8-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for TLR8-AS1 Gene

Sources for TLR8-AS1 Gene

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