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Aliases for TLR8-AS1 Gene

Subcategory (RNA class) for TLR8-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TLR8-AS1 Gene

  • TLR8 Antisense RNA 1 2 3 5
  • TLR8 Antisense RNA 1 (Non-Protein Coding) 2 3
  • GS1-324M7.6 3

External Ids for TLR8-AS1 Gene

Summaries for TLR8-AS1 Gene

GeneCards Summary for TLR8-AS1 Gene

TLR8-AS1 (TLR8 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TLR8-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TLR8-AS1 Gene

Genomics for TLR8-AS1 Gene

GeneHancer (GH) Regulatory Elements for TLR8-AS1 Gene

Promoters and enhancers for TLR8-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XI012790 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 11.8 +151.5 151508 2 HDGF POLR2B GLIS2 RUNX3 ZNF263 SP3 SP5 MAFF ZNF610 GMEB1 PRPS2 TLR8 TLR8-AS1 PSMA6P2
GH0XI012969 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 6.8 -35.4 -35439 17.7 HDGF PKNOX1 SMAD1 ARNT SIN3A IRF4 YY1 POLR2B ZNF207 FOS TMSB4X FAM9C TLR8-AS1 PRPS2 TLR7 TLR8 LOC105373133
GH0XI013472 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 11.9 -530.5 -530480 3.1 CTCF EBF1 DPF2 ATF2 IRF4 SP1 IKZF1 NFATC1 NBN PRDM10 TMSB4X TLR8-AS1 TLR8 GC0XP013525 PIR57438 GC0XM013353
GH0XI013024 Enhancer 1.2 Ensembl ENCODE dbSUPER 11.7 -84.8 -84843 6.4 PKNOX1 NFIB SIN3A RAD21 RCOR1 ATF7 FOS IKZF2 RUNX3 REST FAM9C TMSB4X TLR8-AS1 TLR8 LOC105373133
GH0XI012987 Enhancer 1.2 Ensembl ENCODE dbSUPER 11.5 -45.4 -45424 2.1 ATF1 FOXA2 NFIB RAD21 YY1 RCOR1 FOS ATF7 RXRA CEBPB FAM9C TLR8-AS1 TLR8 TMSB4X LOC105373133
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TLR8-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TLR8-AS1 Gene

Genomic Locations for TLR8-AS1 Gene
chrX:12,902,817-12,943,300
(GRCh38/hg38)
Size:
40,484 bases
Orientation:
Minus strand
chrX:12,920,936-12,926,455
(GRCh37/hg19)

Genomic View for TLR8-AS1 Gene

Genes around TLR8-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TLR8-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TLR8-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TLR8-AS1 Gene

Proteins for TLR8-AS1 Gene

Post-translational modifications for TLR8-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TLR8-AS1 Gene

Domains & Families for TLR8-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TLR8-AS1 Gene

Function for TLR8-AS1 Gene

Phenotypes From GWAS Catalog for TLR8-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TLR8-AS1 Gene

Localization for TLR8-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TLR8-AS1 Gene

Pathways & Interactions for TLR8-AS1 Gene

SuperPathways for TLR8-AS1 Gene

No Data Available

Interacting Proteins for TLR8-AS1 Gene

Gene Ontology (GO) - Biological Process for TLR8-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TLR8-AS1 Gene

Drugs & Compounds for TLR8-AS1 Gene

No Compound Related Data Available

Transcripts for TLR8-AS1 Gene

mRNA/cDNA for TLR8-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TLR8-AS1 Gene

No ASD Table

Relevant External Links for TLR8-AS1 Gene

GeneLoc Exon Structure for
TLR8-AS1
ECgene alternative splicing isoforms for
TLR8-AS1

Expression for TLR8-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TLR8-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TLR8-AS1 Gene

This gene is overexpressed in Whole Blood (x21.6) and Lung (x4.8).

SOURCE GeneReport for Unigene cluster for TLR8-AS1 Gene:

Hs.685035
genes like me logo Genes that share expression patterns with TLR8-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TLR8-AS1 Gene

Orthologs for TLR8-AS1 Gene

Evolution for TLR8-AS1 Gene

ENSEMBL:
Gene Tree for TLR8-AS1 (if available)
TreeFam:
Gene Tree for TLR8-AS1 (if available)

No data available for Orthologs for TLR8-AS1 Gene

Paralogs for TLR8-AS1 Gene

No data available for Paralogs for TLR8-AS1 Gene

Variants for TLR8-AS1 Gene

Sequence variations from dbSNP and Humsavar for TLR8-AS1 Gene

SNP ID Clin Chr 0X pos Variation AA Info Type
rs1000037346 -- 12,918,335(-) G/A intron_variant
rs1000040921 -- 12,939,597(-) G/T intron_variant
rs1000098715 -- 12,931,434(-) T/C intron_variant
rs1000101229 -- 12,933,930(-) A/G intron_variant
rs1000107503 -- 12,938,172(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for TLR8-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv2223e212 CNV loss 25503493
esv3573586 CNV loss 25503493

Additional Variant Information for TLR8-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TLR8-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TLR8-AS1 Gene

Disorders for TLR8-AS1 Gene

Additional Disease Information for TLR8-AS1

No disorders were found for TLR8-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TLR8-AS1 Gene

Publications for TLR8-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for TLR8-AS1 Gene

Sources for TLR8-AS1 Gene

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