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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

TLR4 Gene

protein-coding   GIFtS: 70
GCID: GC09P120466

toll-like receptor 4

 Explore 265 diseases affiliated with
TLR4 via our new
 Human Malady Compendium 
Biological research products
for TLR4
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

This gene clusters with an RNA gene
Subcategory (RNA class): lncRNA

Quality score for the ORGUL clustered with this gene is 3

Aliases
Toll-Like Receptor 41 2     TLR-41 2
HToll1     TOLL2
ARMD101 2 5     Homolog Of Drosophila Toll2
CD2841 2     CD284 Antigen3

External Ids:    HGNC: 118501   Entrez Gene: 70992   Ensembl: ENSG000001368697   OMIM: 6030305   UniProtKB: O002063   
ORGUL members:         
NONCODE:n406639    

Export aliases for TLR4 gene to outside databases

Previous GC identifers: GC09P111571 GC09P112113 GC09P113920 GC09P115842 GC09P117546 GC09P119506 GC09P090084


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for TLR4:
The protein encoded by this gene is a member of the Toll-like receptor (TLR) family which plays a fundamental role in
pathogen recognition and activation of innate immunity. TLRs are highly conserved from Drosophila to humans and share
structural and functional similarities. They recognize pathogen-associated molecular patterns that are expressed on
infectious agents, and mediate the production of cytokines necessary for the development of effective immunity. The
various TLRs exhibit different patterns of expression. This receptor has been implicated in signal transduction events
induced by lipopolysaccharide (LPS) found in most gram-negative bacteria. Mutations in this gene have been associated
with differences in LPS responsiveness. Multiple transcript variants encoding different isoforms have been found for
this gene. (provided by RefSeq, Jan 2012)

UniProtKB/Swiss-Prot: TLR4_HUMAN, O00206
Function: Cooperates with LY96 and CD14 to mediate the innate immune response to bacterial lipopolysaccharide (LPS).
Acts via MYD88, TIRAP and TRAF6, leading to NF-kappa-B activation, cytokine secretion and the inflammatory response.
Also involved in LPS-independent inflammatory responses triggered by Ni(2+). These responses require non-conserved
histidines and are, therefore, species-specific

summary for TLR4:
Toll-like receptors (TLRs) are single transmembrane cell-surface receptors, which have a key role in the
innate immune system. TLRs generally exist as homodimers (although TLR2-TLR6 heterodimers have been
reported) and are found on immune cells such as macrophages, B lymphocytes and mast cells. Toll-like
receptors are activated by molecules associated with biological threat and are highly specific towards
evolutionary conserved entities on microbes, such as bacterial cell-surface lipopolysaccharides, flagella
and unmethylated CpG islands. It has been suggested that some toll-like receptors may have endogenous
ligands, such as Hsp60 and fibrinogen, and this has promoted speculation that endogenous toll-like receptor
activators may have a pathological role in autoimmune disease. Activation of toll-like receptors initiates
downstream signaling cascades, initially via the adapter molecules MyD88, Trap, Trif and Tram, which
converge on the PI 3-K and NF-kappaB pathways and regulate intracellular kinases and gene expression. This
can stimulate an inflammatory and/or antigen-specific immune response. The signaling cascade coupled to
toll-like receptor activation is very similar to that of interleukin-1 receptor (IL-1R) activation.

Gene Wiki entry for TLR4 (TLR 4)


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000009.11  NC_018920.1  NT_008470.19  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the TLR4 gene promoter:
         Sp1   AP-1   ATF-2   PPAR-alpha   AREB6   POU2F1   POU2F1a   c-Jun   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidTLR4 promoter sequence
   Search SABiosciences Chromatin IP Primers for TLR4

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat TLR4


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 9q33.1   Ensembl cytogenetic band:  9q33.1   HGNC cytogenetic band: 9q33.1

TLR4 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
TLR4 gene location

GeneLoc information about chromosome 9         GeneLoc Exon Structure

GeneLoc location for GC09P120466:  view genomic region     (about GC identifiers)

Start:
120,466,460 bp from pter      End:
120,479,768 bp from pter
Size:
13,309 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: TLR4_HUMAN, O00206 (See protein sequence)
Recommended Name: Toll-like receptor 4 precursor  
Size: 839 amino acids; 95680 Da
Subunit: Belongs to the lipopolysaccharide (LPS) receptor, a multi-protein complex containing at least CD14, LY96 and
TLR4. Binding to bacterial LPS leads to homodimerization. Interacts with LY96 via the extracellular domain. Interacts
with MYD88 and TIRAP via their respective TIR domains. Interacts with NOX4. Interacts with CNPY3 (By similarity).
Interacts with HSP90B1. The interaction with both CNPY3 and HSP90B1 is required for proper folding in the endoplasmic
reticulum. Interacts with MLK4; this interaction leads to negative regulation of TLR4 signaling
Subcellular location: Membrane; Single-pass type I membrane protein
Miscellaneous: His-456 and His-458 are found in TLR4 of human and several other primate species and may be responsible
for inflammatory responses triggered by nickel (Ni(2+)). Ni(2+) may cross-link the two receptor monomers through
specific histidines, triggering the formation of a dimer that structurally resembles that induced by LPS. This process
may be the basis for the development of contact allergy to Ni(2+). A mouse model of contact allergy to Ni(2+) in which
TLR4-deficient mice expresses human TLR4 has been proposed
6/10 PDB 3D structures from and Proteopedia for TLR4 (see all 10):
2Z62 (3D)        2Z63 (3D)        2Z65 (3D)        2Z66 (3D)        3FXI (3D)        3UL7 (3D)    
Secondary accessions: A8K1Y8 A9XLP9 A9XLQ0 A9XLQ1 B4E194 D1CS52 D1CS53 Q5VZI8 Q5VZI9 Q9UK78 Q9UM57
Alternative splicing: 3 isoforms:  O00206-1   O00206-2   O00206-3   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for TLR4: NX_O00206

Post-translational modifications:

  • N-glycosylated. Glycosylation of Asn-526 and Asn-575 seems to be necessary for the expression of TLR4 on the cell
  • surface and the LPS-response. Likewise, mutants lacking two or more of the other N-glycosylation sites were deficient
    in interaction with LPS1
  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_O00206

  • TLR4 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins (3 alternative transcripts): 
    NP_003257.1  NP_612564.1  NP_612567.1  

    ENSEMBL proteins: 
     ENSP00000377997   ENSP00000363089  
    Reactome Protein details: O00206
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    Uscn Proteins for TLR4

    Gene Ontology (GO): 5/9 cellular component terms (GO ID links to tree view) (see all 9):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005737cytoplasm IDA19740627
    GO:0005886plasma membrane TAS--
    GO:0005887integral to plasma membrane IDA15027902
    GO:0009897external side of plasma membrane IDA16514062
    GO:0009986cell surface ----


    TLR4 for ontologies           About GeneDecksing



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    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    TLR4 for domains           About GeneDecksing

    5/7 InterPro domains/families (see all 7):
     IPR000483 Cys-rich_flank_reg_C
     IPR027168 TLR4
     IPR001611 Leu-rich_rpt
     IPR025875 Leu-rich_rpt_4
     IPR000157 TIR_dom

    Graphical View of Domain Structure for InterPro Entry O00206

    ProtoNet protein and cluster: O00206

    3 Blocks protein families:
    IPB000157 TIR domain
    IPB000483 Cysteine-rich flanking region
    IPB001611 Leucine-rich repeat signature


    UniProtKB/Swiss-Prot: TLR4_HUMAN, O00206
    Domain: The TIR domain mediates interaction with NOX4
    Similarity: Belongs to the Toll-like receptor family
    Similarity: Contains 18 LRR (leucine-rich) repeats
    Similarity: Contains 1 LRRCT domain
    Similarity: Contains 1 TIR domain


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: TLR4_HUMAN, O00206
    Function: Cooperates with LY96 and CD14 to mediate the innate immune response to bacterial lipopolysaccharide (LPS).
    Acts via MYD88, TIRAP and TRAF6, leading to NF-kappa-B activation, cytokine secretion and the inflammatory response.
    Also involved in LPS-independent inflammatory responses triggered by Ni(2+). These responses require non-conserved
    histidines and are, therefore, species-specific

         Genatlas biochemistry entry for TLR4:
    Drosophila transmembrane receptor Toll homolog 4,specifically expressed in placenta,and on cells of the immune system
    binding directly to TLR2 and essential component of liposaccharides (LPS) receptor,inducing the LPS signaling pathway

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    hsa-miR-549 hsa-miR-140-5p hsa-miR-219-1-3p hsa-miR-3938 hsa-miR-642a hsa-miR-4328 hsa-miR-944 hsa-miR-3074-3p
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    Inhib. RNA
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    Gene Ontology (GO): 5/6 molecular function terms (GO ID links to tree view) (see all 6):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0001530lipopolysaccharide binding NAS10835634
    GO:0001875lipopolysaccharide receptor activity IDA19252480
    GO:0004872receptor activity TAS10426995
    GO:0004888transmembrane signaling receptor activity NAS11970998
    GO:0005515protein binding IPI19509286


    TLR4 for ontologies           About GeneDecksing


    1 GenomeRNAi human phenotype for TLR4:
     Increased viability with 4OH t 

    Animal Models:
         Mouse knock-outs for TLR4: Tlr4tm1Aki Tlr4tm1.1Djh
         15/23 MGI mutant phenotypes (inferred from 9 alleles(MGI details for Tlr4) (see all 23):
     adipose tissue  behavior/neurological  cardiovascular system  cellular  digestive/alimentary 
     growth/size  hearing/vestibular/ear  hematopoietic system  homeostasis/metabolism  immune system 
     integument  limbs/digits/tail  liver/biliary system  mortality/aging  muscle 

    TLR4 for phenotypes           About GeneDecksing


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways - 5/37 super-pathways (see all 37About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1TRAF6 Mediated Induction of proinflammatory cytokines
    8/10 pathways (see all 10)
    Toll Like Receptor TLR1:TLR2 Cascade0.78
    MyD88-independent cascade 0.72
    Toll Like Receptor TLR6:TLR2 Cascade0.78
    Toll Like Receptor 3 (TLR3) Cascade0.72
    Toll Like Receptor 2 (TLR2) Cascade0.78
    Activated TLR4 signalling0.63
    MyD88:Mal cascade initiated on plasma membrane0.78
    Toll Like Receptor 4 (TLR4) Cascade0.61
    2Toll-like receptor signaling pathway
    Toll-like receptor signaling pathway1.00
    Chagas disease (American trypanosomiasis)0.31
    Toll-like receptor signaling pathway0.97
    Inflammasome Activation Pathways0.29
    Toll-Like receptor Signaling Pathways0.51
    3Auto ubiquitination of TRAF6 bound to the activated TLR complex
    Auto ubiquitination of TRAF6 bound to the activated TLR complex1.00
    Activation of IRF3/IRF7 mediated by TBK1/IKK epsilon0.62
    Auto-ubiquitination of TRAF30.83
    IKK complex recruitment mediated by RIP10.50
    TRAF6 mediated induction of TAK1 complex0.73
    TRIF-mediated programmed cell death0.40
    4Toll Comparative Pathway
    Toll Comparative Pathway1.00
    Immune response MIF in innate immunity response0.46
    TLR-TRIF Pathway0.61
    iNOS Signaling0.34
    Immune response_MIF in innate immunity response0.46
    5Th17 Differentiation
    Th17 Differentiation1.00
    IL-21 Signaling and its Primary Biological Effects in Different Immune Cell Types0.47

    Pathway sources
    See GeneCards unified pathways
    Show all pathways

    4 EMD Millipore Pathways for TLR4
        Transcription NF-kB signaling pathway
    Immune response Toll-like receptor (TLR) ligands and common TLR signaling pathway leading to cell proinflammatory response
    Immune response MIF in innate immunity response
    Immune response Role of TLRs 3 and 4 in cell antiviral response- TICAM1-specific signaling pathways

    5/6 R&D Systems Pathways for TLR4 (see all 6)
        Inflammasome Activation Pathways
    IL-21 Signaling and its Primary Biological Effects in Different Immune Cell Types
    A-beta Uptake & Degradation
    Th1 Differentiation
    Toll-Like receptor Signaling Pathways

    5/21 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for TLR4 (see all 21)
        14-3-3 Induced Apoptosis
    MSP-RON Signaling
    Toll-Like Receptors Pathway
    TRAF Pathway
    IL-10 Pathway

    1 Cell Signaling Technology (CST) Pathway for TLR4
        NF-kappaB Signaling

    1 Tocris Bioscience Pathway for TLR4
        Toll-like Receptor Pathway

    5/8 GeneGo (Thomson Reuters) Pathways for TLR4 (see all 8)
        Immune response TLR3 and TLR4 induce TICAM1-specific signaling pathway
    Immune response Bacterial infections in normal airways
    Immune response MIF in innate immunity response
    Immune response TLR signaling pathways
    Bacterial infections in CF airways

    2 BioSystems Pathways for TLR4 
        Pathogenic Escherichia coli infection
    Toll-like receptor signaling pathway

    5/18        Reactome Pathways for TLR4 (see all 18)
        Auto-ubiquitination of TRAF3
    IKK complex recruitment mediated by RIP1
    Toll Like Receptor 2 (TLR2) Cascade
    Toll Like Receptor TLR6:TLR2 Cascade
    Toll-Like Receptors Cascades


    5/13         Kegg Pathways  (Kegg details for TLR4) (see all 13):
        Phagosome
    Toll-like receptor signaling pathway
    Pathogenic Escherichia coli infection
    Pertussis
    Leishmaniasis


    TLR4 for pathways           About GeneDecksing

    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for TLR4

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    5/92 Interacting proteins for TLR4 (O002061, 2, 3 ENSP000003630894) via UniProtKB, MINT, STRING, and/or I2D (see all 92)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    LY96Q9Y6Y91, 3, ENSP000002848184EBI-528701,EBI-1539247 I2D: score=6 STRING: ENSP00000284818
    TIRAPP587531, 3, ENSP000003764454EBI-528701,EBI-528644 I2D: score=5 STRING: ENSP00000376445
    DEFB4AO152633, ENSP000003035324I2D: score=1 STRING: ENSP00000303532
    MYD88Q998362, 3, ENSP000003796254MINT-3981845 I2D: score=7 STRING: ENSP00000379625
    EGFRP005332, 3, ENSP000002754934MINT-3981896 I2D: score=2 STRING: ENSP00000275493
    About this table

    Gene Ontology (GO): 5/88 biological process terms (GO ID links to tree view) (see all 88):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000187activation of MAPK activity ISS--
    GO:0001666response to hypoxia ----
    GO:0002218activation of innate immune response ----
    GO:0002224toll-like receptor signaling pathway TAS--
    GO:0002282microglial cell activation involved in immune response ----


    TLR4 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section

    TLR4 for compounds           About GeneDecksing

    Browse Small Molecules at EMD Millipore
    Enzo Life Sciences drugs & compounds for TLR4

    Compounds for TLR4 available from Tocris Bioscience    About this table
    CompoundAction CAS #
    GIT 27Immunomodulator; reduces production of pro-inflammatory cytokines[6501-72-0]

    2 DrugBank Compounds for TLR4    About this table
    CompoundSynonyms CAS #TypeActionsPubMed Ids
    3-Hydroxy-Myristic Acid-- --target--10592235
    MYRISTIC ACID-- --target--10592235

    10/95 Novoseek chemical compound relationships for TLR4 gene (see all 95)    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    lipoteichoic acid 83.8 64 12691617 (3), 12011760 (3), 11160242 (2), 17296755 (2) (see all 37)
    endotoxin 81.3 302 17977838 (9), 18519568 (5), 17121827 (5), 19368968 (5) (see all 99)
    peptidoglycan 80.9 106 12874299 (6), 16239565 (3), 15142865 (2), 17942642 (2) (see all 65)
    poly(i-c) 73.7 15 14991609 (1), 16115611 (1), 16365459 (1), 16380383 (1) (see all 15)
    flagellin 73.5 28 18397908 (2), 16365459 (1), 18256754 (1), 19955831 (1) (see all 25)
    muramyl dipeptide 68.4 4 15617523 (1), 15839897 (1), 16299289 (1)
    drosomycin 67.8 10 10489372 (1), 8808632 (1), 10973475 (1), 19934223 (1) (see all 7)
    loxoribine 65.2 1 15749901 (1)
    polyinosinic-polycytidylic acid 63.3 17 18031817 (1), 19578865 (1), 18184197 (1), 19863438 (1) (see all 11)
    hbd2 60.8 11 16219107 (5), 15854033 (1), 17241164 (1), 20008534 (1)

    Search CenterWatch for drugs/clinical trials and news about TLR4 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
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    About This Section

    REFSEQ mRNAs for TLR4 gene (4 alternative transcripts): 
    NM_003266.3  NM_138554.4  NM_138557.2  NM_138556.1  

    Unigene Cluster for TLR4:

    Toll-like receptor 4
    Hs.174312  [show with all ESTs]
    Unigene Representative Sequence: NM_003266
    4 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000394487 ENST00000355622(uc004bka.3 uc004bjz.3 uc004bkb.3)
    ENST00000472304 ENST00000490685

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    8/16 QIAGEN miScript miRNA Assays for microRNAs that regulate TLR4 (see all 16):
    hsa-miR-549 hsa-miR-140-5p hsa-miR-219-1-3p hsa-miR-3938 hsa-miR-642a hsa-miR-4328 hsa-miR-944 hsa-miR-3074-3p
    SwitchGear 3'UTR luciferase reporter plasmidTLR4 3' UTR sequence
    Inhib. RNA
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    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for TLR4 (see all 7)
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    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat TLR4
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    Additional cDNA sequence: 

    AB445638.1 AK226155.1 AK290053.1 AK293068.1 AK303730.1 BC025294.1 BC117422.1 BC143841.1 
    U69193.1 U88880.1 

    5 DOTS entries:

    DT.97839126  DT.100020339  DT.99941363  DT.121172426  DT.75168146 

    24/70 AceView cDNA sequences (see all 70):

    NM_138554 NM_138557 Z42560 BM931788 N42522 AI082399 BF439941 BX642592 
    AI086117 AW016347 AA598398 BX473935 AI356888 AX752005 AA490278 CA417825 
    BQ020285 NM_003266 BU675644 BX280079 AI332385 BQ233558 AI371874 CA442537 

    GeneLoc Exon Structure

    4 Alternative Splicing Database (ASD) splice patterns (SP) for TLR4    About this scheme

    ExUns: 1a · 1b · 1c ^ 2 ^ 3a · 3b ^ 4a · 4b · 4c
    SP1:                                -                     
    SP2:                    -           -                     
    SP3:                    -     -     -                     
    SP4:                                                      


    ECgene alternative splicing isoforms for TLR4

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    TLR4 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: TTAAGTGTTC

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image

    TLR4 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
    1 LifeMap In Vivo Development Anatomical Compartment/Cell 
    Tissue Anatomical Compartment CellCategory (developmental path)
    HeartMyocardiumCardiac FibroblastsEpicardium
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization
    Stem Cell Differentiation: 1 LifeMap Cell 
    NameCategory
    CD31, CD144 positive cells (Two-step protocol fo...)

    See TLR4 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for TLR4

    SOURCE GeneReport for Unigene cluster: Hs.174312

    UniProtKB/Swiss-Prot: TLR4_HUMAN, O00206
    Tissue specificity: Highly expressed in placenta, spleen and peripheral blood leukocytes. Detected in monocytes,
    macrophages, dendritic cells and several types of T-cells

        SABiosciences Expression via Pathway-Focused PCR Arrays including TLR4 (see all 17): 
              Toll-Like Receptor Signaling Pathway in human mouse rat
              Liver Cancer in human mouse rat
              Inflammatory Response & Autoimmunity in human mouse rat
              T-cell & B-cell Activation in human mouse rat
              Inflammatory Response & Autoimmunity 384HT in human mouse rat

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    In Situ
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TLR4

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for TLR4 gene from 4/15 species (see all 15)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves TLR41 toll-like receptor 4 55.84(n)
    46.69(a)
      417241  NM_001030693.1  NP_001025864.1 
    lizard
    (Anolis carolinensis)
    Reptilia TLR46
    --
    44(a)
    1 ↔ 1
    GL343450.1(659590-664285)
    zebrafish
    (Danio rerio)
    Actinopterygii tlr4ba1 toll-like receptor 4b, duplicate a 50(n)
    39.42(a)
      403131  NM_001131051.1  NP_001124523.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta Tehao6
    Tl6
    (see all 4)
    Toll
    (see all 4)
    17(a)
    13(a)
    (see all 4)
    possible ortholog
    possible ortholog
    (see all 4)
    2L(13435622-13439333)
    3R(22624765-22668125)


    ENSEMBL Gene Tree for TLR4 (if available)
    TreeFam Gene Tree for TLR4 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for TLR4 gene
    CD1802  ENSG000001733662  TLR72  TLR12  TLR92  TLR52  TLR102  LRRC332  
    TLR82  TLR62  LRRC322  TLR32  TLR22  
    2 SIMAP similar genes for TLR4 using alignment to 10 protein entries:     TLR4_HUMAN (see all proteins):
    TLR-4    SLIT2

    TLR4 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    UniProtKB/Swiss-Prot: TLR4_HUMAN, O00206
    Polymorphism: Allele TLR4*B (Gly-299, Ile-399) is associated with a blunted response to inhaled LPS


    10/616 NCBI SNPs in TLR4 are shown (see all 616    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 9 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs49867911,2
    C,F,H,pathogenic98275677(+) GACAAC/TCAGCC 6 T I mis124Minor allele frequency- T:0.05MN NA EU NS EA 7707
    rs49867901,2
    C,F,H,pathogenic98275977(+) CGATGA/GTATTA 6 D G mis136Minor allele frequency- G:0.06MN NA EU NS EA CA WA 11133
    rs1378539201,2
    C,F,untested98276031(+) CCTGTG/ACAATT 6 /Y /C mis12Minor allele frequency- A:0.00NA EU 5863
    rs2002760331,2
    Cother98276007(+) ATTCCA/GATTAG 6 Q R mis10--------
    rs115368621,2
    C,F,H--90082637(+) GAGCAA/GAGCTT 3 -- us2k17Minor allele frequency- G:0.00NA EU NS EA 514
    rs561315351,2
    C,--90083004(+) TGTAAC/TGATGA 3 -- us2k11Minor allele frequency- T:0.50NA 2
    rs1119497991,2
    --90083077(+) ATCTTC/TGTTTT 3 -- us2k11Minor allele frequency- T:0.50CSA 2
    rs78662141,2
    C,F,H,--90083200(+) CACATT/CTTACA 3 -- us2k114Minor allele frequency- C:0.03NS EA NA EU 1646
    rs115368631,2
    C,--90083374(+) GAGTAC/TGTATC 3 -- us2k16Minor allele frequency- T:0.02NA EU WA 214
    rs115368641,2
    C,--90083457(+) CTAACG/ATGTGG 3 -- us2k13Minor allele frequency- A:0.01NA EU 92

    HapMap Linkage Disequilibrium report for TLR4 (120466460 - 120479768 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for TLR4: --
    Human Gene Mutation Database (HGMD): TLR4

    SABiosciences Cancer Mutation PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    TLR4 for disorders           About GeneDecksing

    OMIM gene information: 603030   
    OMIM disorders: 611488  114500  
    UniProtKB/Swiss-Prot: TLR4_HUMAN, O00206
  • Genetic variation in TLR4 is associated with age-related macular degeneration type 10 (ARMD10) [MIM:611488].
  • ARMD is a multifactorial eye disease and the most common cause of irreversible vision loss in the developed world. In
    most patients, the disease is manifest as ophthalmoscopically visible yellowish accumulations of protein and lipid
    that lie beneath the retinal pigment epithelium and within an elastin-containing structure known as Bruch membrane

    20/265 diseases for TLR4 (see all 265):    About MalaCards
    macular degeneration, age-related, 10    perinatal necrotizing enterocolitis    marginal zone b-cell lymphoma    endotoxin hyporesponsiveness
    hyper-ige syndrome    niemann-pick disease    diffuse large b-cell lymphoma    hypersensitivity reaction type ii disease
    b-cell lymphomas    cleft lip/palate    age related macular degeneration    anterior uveitis
    hemolytic-uremic syndrome    patent ductus arteriosus    macular degeneration    graft versus host disease
    sclerosing cholangitis    mycobacterial infection    primary sclerosing cholangitis    boutonneuse fever

    13 diseases from the University of Copenhagen DISEASES database for TLR4:
    Inflammatory bowel disease     Atherosclerosis     Periodontitis     Perinatal necrotizing enterocolitis
    Asthma     Pneumonia     Arthritis     Liver disease
    Hypersensitivity reaction type II disease     Cancer     Mastitis     Heart disease
    Hypersensitivity reaction type I disease

    10/93 Novoseek disease relationships for TLR4 gene (see all 93)    About this table

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    inflammation 74.6 175 18928988 (3), 20067961 (3), 19390489 (3), 19359427 (3) (see all 99)
    necrosis 73.4 169 15325567 (4), 16970685 (2), 17304101 (2), 17529905 (2) (see all 99)
    gram-negative bacterial infections 73 20 19326213 (1), 18644971 (1), 17456342 (1), 18437214 (1) (see all 11)
    sepsis 67 128 15086396 (6), 15614130 (4), 17456342 (4), 15489631 (4) (see all 53)
    bacterial infections 66.3 34 12853386 (3), 16738534 (2), 11260138 (1), 11781369 (1) (see all 28)
    inflammatory bowel diseases 60.1 18 19710105 (2), 15655821 (1), 11083826 (1), 20375592 (1) (see all 17)
    shock septic 59.4 20 20441696 (2), 15328161 (1), 16878028 (1), 15520404 (1) (see all 15)
    tumors 53.9 233 19318560 (8), 19643479 (4), 15325567 (4), 19155492 (4) (see all 99)
    atherosclerosis 53.8 76 17367503 (4), 15894821 (3), 17872459 (2), 17849054 (2) (see all 50)
    colitis ulcerative 52.8 12 15207785 (3), 17538633 (1), 16085746 (1), 18942754 (1) (see all 11)

    Genetic Association Database (GAD): TLR4
    Human Genome Epidemiology (HuGE) Navigator: TLR4 (482 documents)

    Export disorders for TLR4 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for TLR4 gene, integrated from 9 sources (see all 2537):
    (articles sorted by number of sources associating them with TLR4)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Toll-like receptor 4 variant D299G is associated with susceptibility to age-related macular degeneration. (PubMed id 15829498)1, 2, 4, 9 Zareparsi S.... Swaroop A. (2005)
    2. A family of human receptors structurally related to Drosophila Toll. (PubMed id 9435236)1, 2, 3, 9 Rock F.L.... Bazan J.F. (1998)
    3. TLR4 mutations are associated with endotoxin hyporesponsiveness in humans. (PubMed id 10835634)1, 2, 4 Arbour N.C.... Schwartz D.A. (2000)
    4. A human homologue of the Drosophila Toll protein signals activation of adaptive immunity. (PubMed id 9237759)1, 2, 3 Medzhitov R....Janeway C.A. (1997)
    5. Association between polymorphisms in the Toll-like receptor 4, CD14, and CARD15/NOD2 and inflammatory bowel disease in the Greek population. (PubMed id 15655821)1, 4, 9 Gazouli M....Gorgoulis V.G. (2005)
    6. MD-2 and TLR4 N-linked glycosylations are important for a functional lipopolysaccharide receptor. (PubMed id 11706042)1, 2, 9 da Silva Correia J. and Ulevitch R.J. (2002)
    7. NOD2/CARD15, TLR4 and CD14 mutations in Scottish and Irish Crohn's disease patients: evidence for genetic heterogeneity within Europe? (PubMed id 15190267)1, 4, 9 Arnott I.D....Satsangi J. (2004)
    8. Lack of association between polymorphisms of the toll-like receptor 4 gene and cerebral ischemia. (PubMed id 15258789)1, 4, 9 Reismann P....Bierhaus A. (2004)
    9. Polymorphisms of TLR4: rapid genotyping and reduced response to lipopolysaccharide of TLR4 mutant alleles. (PubMed id 12324481)1, 4, 9 Schmitt C....Pahl A. (2002)
    10. Association of TLR4 mutations and the risk for acute GVHD after HLA-matched-sibling hematopoietic stem cell transplantation. (PubMed id 11529488)1, 4, 9 Lorenz E....Clark J.G. (2001)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Disorders
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 7099 HGNC: 11850 AceView: TLR4 Ensembl:ENSG00000136869 euGenes: HUgn7099
    ECgene: TLR4 Kegg: 7099 H-InvDB: TLR4

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for TLR4 Pharmacogenomics, SNPs, Pathways
    Protein Spotlighthttp://web.expasy.org/spotlight/back_issues/sptlt134.shtml

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for TLR4 gene:
    Search GeneIP for patents involving TLR4

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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