TLR4 Gene
protein-coding GIFtS : 70
GCID: GC09 P120466
toll-like receptor 4
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Aliasesfor TLR4 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section This gene clusters with an RNA geneSubcategory (RNA class): lncRNAQuality score for the ORGUL clustered with this gene is 3 Aliases Toll-Like Receptor 4 1 2 TLR-41 2 HToll1 TOLL2 ARMD101 2 5 Homolog Of Drosophila Toll2 CD2841 2 CD284 Antigen3
External Ids: HGNC: 11850 1 Entrez Gene: 7099 2 Ensembl: ENSG00000136869 7 OMIM: 603030 5 UniProtKB: O00206 3 ORGUL members: NONCODE:n406639
Export aliases for TLR4 gene to outside databases Previous GC identifers: GC09P111571 GC09P112113 GC09P113920 GC09P115842 GC09P117546 GC09P119506 GC09P090084
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Summariesfor TLR4 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for TLR4 : The protein encoded by this gene is a member of the Toll-like receptor (TLR) family which plays a fundamental role in pathogen recognition and activation of innate immunity. TLRs are highly conserved from Drosophila to humans and share structural and functional similarities. They recognize pathogen-associated molecular patterns that are expressed on infectious agents, and mediate the production of cytokines necessary for the development of effective immunity. The various TLRs exhibit different patterns of expression. This receptor has been implicated in signal transduction events induced by lipopolysaccharide (LPS) found in most gram-negative bacteria. Mutations in this gene have been associated with differences in LPS responsiveness. Multiple transcript variants encoding different isoforms have been found for this gene. (provided by RefSeq, Jan 2012) UniProtKB/Swiss-Prot: TLR4_HUMAN, O00206 Function : Cooperates with LY96 and CD14 to mediate the innate immune response to bacterial lipopolysaccharide (LPS).Acts via MYD88, TIRAP and TRAF6, leading to NF-kappa-B activation, cytokine secretion and the inflammatory response. Also involved in LPS-independent inflammatory responses triggered by Ni(2+). These responses require non-conserved histidines and are, therefore, species-specific summary
for TLR4 : Toll-like receptors (TLRs) are single transmembrane cell-surface receptors, which have a key role in theinnate immune system. TLRs generally exist as homodimers (although TLR2-TLR6 heterodimers have beenreported) and are found on immune cells such as macrophages, B lymphocytes and mast cells. Toll-likereceptors are activated by molecules associated with biological threat and are highly specific towardsevolutionary conserved entities on microbes, such as bacterial cell-surface lipopolysaccharides, flagellaand unmethylated CpG islands. It has been suggested that some toll-like receptors may have endogenousligands, such as Hsp60 and fibrinogen, and this has promoted speculation that endogenous toll-like receptoractivators may have a pathological role in autoimmune disease. Activation of toll-like receptors initiatesdownstream signaling cascades, initially via the adapter molecules MyD88, Trap, Trif and Tram, whichconverge on the PI 3-K and NF-kappaB pathways and regulate intracellular kinases and gene expression. Thiscan stimulate an inflammatory and/or antigen-specific immune response. The signaling cascade coupled totoll-like receptor activation is very similar to that of interleukin-1 receptor (IL-1R) activation. Gene Wiki entry for TLR4 (TLR 4)
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Genomic Viewsfor TLR4 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000009.11 NC_018920.1 NT_008470.19 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the TLR4 gene promoter: Sp1 AP-1 ATF-2 PPAR-alpha AREB6 POU2F1 POU2F1a c-Jun Other transcription factors Search SABiosciences Chromatin IP Primers for TLR4 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat TLR4
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 9q33.1 Ensembl cytogenetic band: 9q33.1 HGNC cytogenetic band: 9q33.1 TLR4 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 9 GeneLoc Exon Structure
GeneLoc location for GC09P120466: view genomic region
(about GC identifiers )
Start:
120,466,460 bp from pter
End:
120,479,768 bp from pter
Size:
13,309 bases
Orientation:
plus strand
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Proteinsfor TLR4 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: TLR4_HUMAN, O00206 (See
protein sequence )Recommended Name: Toll-like receptor 4 precursor Size : 839 amino acids; 95680 Da
Subunit : Belongs to the lipopolysaccharide (LPS) receptor, a multi-protein complex containing at least CD14, LY96 andTLR4. Binding to bacterial LPS leads to homodimerization. Interacts with LY96 via the extracellular domain. Interacts with MYD88 and TIRAP via their respective TIR domains. Interacts with NOX4. Interacts with CNPY3 (By similarity). Interacts with HSP90B1. The interaction with both CNPY3 and HSP90B1 is required for proper folding in the endoplasmic reticulum. Interacts with MLK4; this interaction leads to negative regulation of TLR4 signaling
Subcellular location : Membrane; Single-pass type I membrane protein
Miscellaneous : His-456 and His-458 are found in TLR4 of human and several other primate species and may be responsiblefor inflammatory responses triggered by nickel (Ni(2+)). Ni(2+) may cross-link the two receptor monomers through specific histidines, triggering the formation of a dimer that structurally resembles that induced by LPS. This process may be the basis for the development of contact allergy to Ni(2+). A mouse model of contact allergy to Ni(2+) in which TLR4-deficient mice expresses human TLR4 has been proposed
6/10 PDB 3D structures from and Proteopedia for TLR4 (see all 10 ):2Z62 (3D)
  2Z63 (3D)
  2Z65 (3D)
  2Z66 (3D)
  3FXI (3D)
  3UL7 (3D)
 
Secondary accessions : A8K1Y8 A9XLP9 A9XLQ0 A9XLQ1 B4E194 D1CS52 D1CS53 Q5VZI8 Q5VZI9 Q9UK78 Q9UM57Alternative splicing : 3 isoforms : O00206-1 O00206-2 O00206-3 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for TLR4: NX_O00206 Post-translational modifications:
N-glycosylated. Glycosylation of Asn-526 and Asn-575 seems to be necessary for the expression of TLR4 on the cell surface and the LPS-response. Likewise, mutants lacking two or more of the other N-glycosylation sites were deficient in interaction with LPS1
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_O00206 TLR4 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins (3 alternative transcripts):
NP_003257.1 NP_612564.1 NP_612567.1 ENSEMBL proteins: ENSP00000377997 ENSP00000363089 Reactome Protein details: O00206 Human Recombinant Protein Products: Gene Ontology (GO): 5/9 cellular component terms (GO ID links to tree view) (see all 9 ): About this table
TLR4 for ontologies About GeneDecksing TLR4 Antibody Products: Assay Products for TLR4:
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Protein
Domains / Familiesfor TLR4 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
TLR4 for domains About GeneDecksing 5/7 InterPro domains/families (see all 7 ):
Graphical View of Domain Structure for InterPro Entry O00206 ProtoNet protein and cluster: O00206
3 Blocks protein families : IPB000157 TIR domain IPB000483 Cysteine-rich flanking region IPB001611 Leucine-rich repeat signature UniProtKB/Swiss-Prot: TLR4_HUMAN, O00206 Domain : The TIR domain mediates interaction with NOX4Similarity : Belongs to the Toll-like receptor familySimilarity : Contains 18 LRR (leucine-rich) repeatsSimilarity : Contains 1 LRRCT domainSimilarity : Contains 1 TIR domain
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Functionfor TLR4 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: TLR4_HUMAN, O00206 Function : Cooperates with LY96 and CD14 to mediate the innate immune response to bacterial lipopolysaccharide (LPS).Acts via MYD88, TIRAP and TRAF6, leading to NF-kappa-B activation, cytokine secretion and the inflammatory response. Also involved in LPS-independent inflammatory responses triggered by Ni(2+). These responses require non-conserved histidines and are, therefore, species-specific
Genatlas biochemistry entry for TLR4 : Drosophila transmembrane receptor Toll homolog 4,specifically expressed in placenta,and on cells of the immune system binding directly to TLR2 and essential component of liposaccharides (LPS) receptor,inducing the LPS signaling pathway Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for TLR4 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for TLR4 (see all 3 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: TLR4 (NM_138554 ) Sino Biological Human cDNA Clone for TLR4 DNA2.0 Custom Codon Optimized Gene
Synthesis Service for TLR4 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat TLR4
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TLR4
Gene Ontology (GO): 5/6 molecular function terms (GO ID links to tree view) (see all 6 ): About this table
TLR4 for ontologies About GeneDecksing 1 GenomeRNAi human phenotype for TLR4 :Animal Models: Mouse knock-outs for TLR4: Tlr4 tm1Aki Tlr4 tm1.1Djh 15/23 MGI mutant phenotypes (inferred from 9 alleles ) (MGI details for Tlr4) (see all 23 ):
TLR4 for phenotypes About GeneDecksing
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Pathways & Interactionsfor TLR4 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Unified GeneCards pathways  - 5/37 super-pathways (see all 37 ) About this table See pathways by source Super-pathway contained gene-specific pathways 1 TRAF6 Mediated Induction of proinflammatory cytokines 2 Toll-like receptor signaling pathway 3 Auto ubiquitination of TRAF6 bound to the activated TLR complex 4 Toll Comparative Pathway 5 Th17 Differentiation
Pathway sources See GeneCards unified pathways Show all pathways 4 EMD Millipore Pathways for TLR4 5/6 R&D Systems Pathways for TLR4 (see all 6 )5/21 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for TLR4 (see all 21 )1
Cell Signaling Technology (CST) Pathway for TLR4 1 Tocris Bioscience Pathway for TLR4 5/8 GeneGo (Thomson Reuters) Pathways for TLR4 (see all 8 )2 BioSystems Pathways for TLR4 5/18
Reactome Pathways for TLR4 (see all 18 )5/13
Kegg Pathways (Kegg details for TLR4) (see all 13 ):
TLR4 for pathways About GeneDecksing Interactions: SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for TLR4 STRING Interaction
Network Preview (showing 5 interactants - click image to see 25)5/92 Interacting proteins for TLR4 (O00206 1 , 2 , 3 ENSP00000363089 4 ) via UniProtKB, MINT, STRING , and/or I2D (see all 92 )Interactant Interaction Details GeneCard External ID(s) LY96 Q9Y6Y9 1 , 3 , ENSP00000284818 4 EBI-528701,EBI-1539247 I2D:
score=6 STRING: ENSP00000284818 TIRAP P58753 1 , 3 , ENSP00000376445 4 EBI-528701,EBI-528644 I2D:
score=5 STRING: ENSP00000376445 DEFB4A O15263 3 , ENSP00000303532 4 I2D:
score=1 STRING: ENSP00000303532 MYD88 Q99836 2 , 3 , ENSP00000379625 4 MINT-3981845 I2D:
score=7 STRING: ENSP00000379625 EGFR P00533 2 , 3 , ENSP00000275493 4 MINT-3981896 I2D:
score=2 STRING: ENSP00000275493
About this table Gene Ontology (GO): 5/88 biological process terms (GO ID links to tree view) (see all 88 ): About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0000187 activation of MAPK activity
ISS -- GO:0001666 response to hypoxia
-- -- GO:0002218 activation of innate immune response
-- -- GO:0002224 toll-like receptor signaling pathway
TAS -- GO:0002282 microglial cell activation involved in immune response
-- --
TLR4 for ontologies About GeneDecksing
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Drugs & Compoundsfor TLR4 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section
TLR4 for compounds About GeneDecksing
Enzo Life Sciences drugs & compounds for TLR4
Compounds for TLR4 available from Tocris Bioscience About this table Compound Action
CAS
# GIT 27 Immunomodulator; reduces production of pro-inflammatory cytokines [6501-72-0]
2 DrugBank Compounds for TLR4 About this table 10/95 Novoseek chemical compound relationships for TLR4 gene (see all 95 ) About this table
Compound
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
lipoteichoic acid
83.8
64
12691617 (3), 12011760 (3), 11160242 (2), 17296755 (2) (see all 37 )
endotoxin
81.3
302
17977838 (9), 18519568 (5), 17121827 (5), 19368968 (5) (see all 99 )
peptidoglycan
80.9
106
12874299 (6), 16239565 (3), 15142865 (2), 17942642 (2) (see all 65 )
poly(i-c)
73.7
15
14991609 (1), 16115611 (1), 16365459 (1), 16380383 (1) (see all 15 )
flagellin
73.5
28
18397908 (2), 16365459 (1), 18256754 (1), 19955831 (1) (see all 25 )
muramyl dipeptide
68.4
4
15617523 (1), 15839897 (1), 16299289 (1)
drosomycin
67.8
10
10489372 (1), 8808632 (1), 10973475 (1), 19934223 (1) (see all 7 )
loxoribine
65.2
1
15749901 (1)
polyinosinic-polycytidylic acid
63.3
17
18031817 (1), 19578865 (1), 18184197 (1), 19863438 (1) (see all 11 )
hbd2
60.8
11
16219107 (5), 15854033 (1), 17241164 (1), 20008534 (1)
Search CenterWatch for drugs/clinical trials and news about TLR4
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Transcriptsfor TLR4 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for TLR4 gene (4 alternative transcripts): NM_003266.3 NM_138554.4 NM_138557.2 NM_138556.1 Unigene Cluster for TLR4:
Toll-like receptor 4 Hs.174312 [show with all ESTs ] Unigene Representative Sequence: NM_003266 4 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000394487 ENST00000355622 (uc004bka.3 uc004bjz.3 uc004bkb.3 )ENST00000472304 ENST00000490685 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for TLR4 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for TLR4 (see all 3 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: TLR4 (NM_138554 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for TLR4 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat TLR4
Additional cDNA sequence: AB445638.1 AK226155.1 AK290053.1 AK293068.1 AK303730.1 BC025294.1 BC117422.1 BC143841.1 U69193.1 U88880.1
5 DOTS entries : DT.97839126 DT.100020339
DT.99941363 DT.121172426 DT.75168146 24/70 AceView cDNA sequences (see all 70 ):
NM_138554 NM_138557 Z42560 BM931788 N42522 AI082399 BF439941 BX642592 AI086117 AW016347 AA598398 BX473935 AI356888 AX752005 AA490278 CA417825 BQ020285 NM_003266 BU675644 BX280079 AI332385 BQ233558 AI371874 CA442537 GeneLoc Exon Structure 4 Alternative Splicing Database (ASD) splice patterns (SP) for TLR4 About this scheme ExUns: 1a · 1b · 1c ^ 2 ^ 3a · 3b ^ 4a · 4b · 4c SP1 :           -         SP2 :       -     -         SP3 :       -   -   -         SP4 :                  
ECgene alternative splicing isoforms for TLR4
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Expression for TLR4 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section TLR4 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: TTAAGTGTTC
About this image TLR4 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table 1 LifeMap In Vivo Development Anatomical Compartment/Cell Tissue Anatomical Compartment
Cell Category (developmental path) Heart Myocardium Cardiac Fibroblasts Epicardium Expression: Positive Negative
Selective markerExperimental details:
Curated
Microarrays
In-situ hybridization
Stem Cell Differentiation: 1 LifeMap Cell Name Category CD31, CD144 positive cells (Two-step protocol fo... )
See TLR4 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for TLR4 SOURCE GeneReport for Unigene cluster: Hs.174312 UniProtKB/Swiss-Prot: TLR4_HUMAN, O00206 Tissue specificity : Highly expressed in placenta, spleen and peripheral blood leukocytes. Detected in monocytes,macrophages, dendritic cells and several types of T-cells SABiosciences Expression via Pathway-Focused PCR Arrays including TLR4 (see all 17 ): Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for TLR4Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat TLR4 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat TLR4 Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat TLR4 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TLR4
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Orthologsfor TLR4 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of animals.
Orthologs for TLR4 gene from 4/15 species (see all 15 ) About this table
ENSEMBL Gene Tree for TLR4 (if available)TreeFam Gene Tree for TLR4 (if available)
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Paralogsfor TLR4 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for TLR4 gene CD180 2 ENSG00000173366 2 TLR7 2 TLR1 2 TLR9 2 TLR5 2 TLR10 2 LRRC33 2 TLR8 2 TLR6 2 LRRC32 2 TLR3 2 TLR2 2 2 SIMAP similar genes for TLR4 using alignment to 10 protein entries: TLR4_HUMAN (see all proteins ):TLR-4 SLIT2
TLR4 for paralogs About GeneDecksing
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Genomic Variantsfor TLR4 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section UniProtKB/Swiss-Prot: TLR4_HUMAN, O00206 Polymorphism : Allele TLR4*B (Gly-299, Ile-399) is associated with a blunted response to inhaled LPS
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 9 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for TLR4 (120466460 - 120479768 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for TLR4: -- Human Gene Mutation Database (HGMD) : TLR4 SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing TLR4
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Disorders
/ Diseasesfor TLR4 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database , Novoseek ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
TLR4 for disorders About GeneDecksing OMIM gene information: 603030 OMIM disorders : 611488 114500 UniProtKB/Swiss-Prot: TLR4_HUMAN, O00206
Genetic variation in TLR4 is associated with age-related macular degeneration type 10 (ARMD10) [MIM:611488]. ARMD is a multifactorial eye disease and the most common cause of irreversible vision loss in the developed world. In most patients, the disease is manifest as ophthalmoscopically visible yellowish accumulations of protein and lipid that lie beneath the retinal pigment epithelium and within an elastin-containing structure known as Bruch membrane 20/265 diseases for TLR4 (see all 265 ): About MalaCards macular degeneration, age-related, 10 perinatal necrotizing enterocolitis marginal zone b-cell lymphoma endotoxin hyporesponsiveness hyper-ige syndrome niemann-pick disease diffuse large b-cell lymphoma hypersensitivity reaction type ii disease b-cell lymphomas cleft lip/palate age related macular degeneration anterior uveitis hemolytic-uremic syndrome patent ductus arteriosus macular degeneration graft versus host disease sclerosing cholangitis mycobacterial infection primary sclerosing cholangitis boutonneuse fever 13 diseases from the University of Copenhagen DISEASES database for TLR4 :Inflammatory bowel disease Atherosclerosis Periodontitis Perinatal necrotizing enterocolitis Asthma Pneumonia Arthritis Liver disease Hypersensitivity reaction type II disease Cancer Mastitis Heart disease Hypersensitivity reaction type I disease 10/93 Novoseek disease relationships for TLR4 gene (see all 93 ) About this table
Disease
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
inflammation
74.6
175
18928988 (3), 20067961 (3), 19390489 (3), 19359427 (3) (see all 99 )
necrosis
73.4
169
15325567 (4), 16970685 (2), 17304101 (2), 17529905 (2) (see all 99 )
gram-negative bacterial infections
73
20
19326213 (1), 18644971 (1), 17456342 (1), 18437214 (1) (see all 11 )
sepsis
67
128
15086396 (6), 15614130 (4), 17456342 (4), 15489631 (4) (see all 53 )
bacterial infections
66.3
34
12853386 (3), 16738534 (2), 11260138 (1), 11781369 (1) (see all 28 )
inflammatory bowel diseases
60.1
18
19710105 (2), 15655821 (1), 11083826 (1), 20375592 (1) (see all 17 )
shock septic
59.4
20
20441696 (2), 15328161 (1), 16878028 (1), 15520404 (1) (see all 15 )
tumors
53.9
233
19318560 (8), 19643479 (4), 15325567 (4), 19155492 (4) (see all 99 )
atherosclerosis
53.8
76
17367503 (4), 15894821 (3), 17872459 (2), 17849054 (2) (see all 50 )
colitis ulcerative
52.8
12
15207785 (3), 17538633 (1), 16085746 (1), 18942754 (1) (see all 11 )
Genetic Association Database (GAD): TLR4 Human Genome Epidemiology (HuGE) Navigator: TLR4 (482 documents) Export disorders for TLR4 gene to outside databases
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Publicationsfor TLR4 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for TLR4 gene, integrated from 9 sources (see all 2537 ): (articles sorted by number of sources associating them with TLR4) Utopia : connect your pdf to the dynamic world of online information
Toll-like receptor 4 variant D299G is associated with susceptibility to age-related macular degeneration. (PubMed id 15829498) 1 , 2 , 4, 9 Zareparsi S.... Swaroop A. (2005) A family of human receptors structurally related to Drosophila Toll. (PubMed id 9435236) 1 , 2 , 3, 9 Rock F.L.... Bazan J.F. (1998) TLR4 mutations are associated with endotoxin hyporesponsiveness in humans. (PubMed id 10835634) 1 , 2 , 4 Arbour N.C.... Schwartz D.A. (2000) A human homologue of the Drosophila Toll protein signals activation of adaptive immunity. (PubMed id 9237759) 1 , 2 , 3 Medzhitov R....Janeway C.A. (1997) Association between polymorphisms in the Toll-like receptor 4, CD14, and CARD15/NOD2 and inflammatory bowel disease in the Greek population. (PubMed id 15655821) 1 , 4, 9 Gazouli M....Gorgoulis V.G. (2005) MD-2 and TLR4 N-linked glycosylations are important for a functional lipopolysaccharide receptor. (PubMed id 11706042) 1 , 2 , 9 da Silva Correia J. and Ulevitch R.J. (2002) NOD2/CARD15, TLR4 and CD14 mutations in Scottish and Irish Crohn's disease patients: evidence for genetic heterogeneity within Europe? (PubMed id 15190267) 1 , 4, 9 Arnott I.D....Satsangi J. (2004) Lack of association between polymorphisms of the toll-like receptor 4 gene and cerebral ischemia. (PubMed id 15258789) 1 , 4, 9 Reismann P....Bierhaus A. (2004) Polymorphisms of TLR4: rapid genotyping and reduced response to lipopolysaccharide of TLR4 mutant alleles. (PubMed id 12324481) 1 , 4, 9 Schmitt C....Pahl A. (2002) Association of TLR4 mutations and the risk for acute GVHD after HLA-matched-sibling hematopoietic stem cell transplantation. (PubMed id 11529488) 1 , 4, 9 Lorenz E....Clark J.G. (2001)
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
External Searches for TLR4 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Genome Databases showing TLR4 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Other Databases showing TLR4 gene
(According to HUGE )
About This Section --
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Specialized Databases showing TLR4 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for TLR4 Pharmacogenomics, SNPs, Pathways Protein Spotlight http://web.expasy.org/spotlight/back_issues/sptlt134.shtml
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
About This Section Patent Information for TLR4 gene: Search GeneIP for patents involving TLR4 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Productsfor TLR4 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
OriGene Antibodies for TLR4 OriGene shRNA RFP for TLR4 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for TLR4 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for TLR4 OriGene Protein Over-expression Lysate for TLR4 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for TLR4 OriGene 3'-UTR Clone for TLR4 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for TLR4 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for TLR4 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs OriGene Purified Protein for TLR4 OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for TLR4 OriGene Custom Protein Services for TLR4 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat TLR4 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing TLR4 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat TLR4 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat TLR4 Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat TLR4 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat TLR4
Antibodies & Assays for TLR4  
Tocris compounds for TLR4
TLR4 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TLR4
ThermoFisher Antibody for TLR4
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat TLR4
Jump to Section...
Aliases for TLR4
Databases for TLR4
Disorders / Diseases for TLR4
Domains / Families for TLR4
Drugs / Compounds for TLR4
Expression for TLR4
Function for TLR4
Genomic Views for TLR4
Intellectual Property for TLR4
Orthologs for TLR4
Paralogs for TLR4
Pathways / Interactions for TLR4
Products for TLR4
Proteins for TLR4
Publications for TLR4
Search Box for TLR4
Summaries for TLR4
Transcripts for TLR4
Variants for TLR4
TOP
BOTTOM
GeneCards Homepage -
Last full update: 18 Mar 2013 -
Incrementals: 21 Mar 2013 , 15 Apr 2013 , 27 Apr 2013
View Random Gene
Category
Protein-coding
RNA genes
Genetic Loci
Pseudogenes
Gene clusters
Uncategorized
Any
Go
von Willebrand factor
GIFtS Group
High
Medium
Low
Any
Developed at the Crown Human Genome Center ,
Department of Molecular Genetics ,
the Weizmann Institute of Science
Copyright © 1996-2013
, Weizmann Institute of Science. All Rights Reserved.
hostname: 356977-web1.xennexinc.com
index build: 100 solr: 1.4