Free for academic non-profit institutions. Other users need a Commercial license

Aliases for TLDC1 Gene

Aliases for TLDC1 Gene

  • TBC/LysM-Associated Domain Containing 1 2 3 5
  • KIAA1609 2 3 4
  • TBC/LysM-Associated Domain-Containing Protein 1 3 4
  • TLD Domain Containing 1 2 3
  • TLD Domain-Containing Protein 1 3

External Ids for TLDC1 Gene

Previous HGNC Symbols for TLDC1 Gene

  • KIAA1609

Summaries for TLDC1 Gene

GeneCards Summary for TLDC1 Gene

TLDC1 (TBC/LysM-Associated Domain Containing 1) is a Protein Coding gene. An important paralog of this gene is OXR1.

Additional gene information for TLDC1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TLDC1 Gene

Genomics for TLDC1 Gene

Regulatory Elements for TLDC1 Gene

Enhancers for TLDC1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16H085518 2 FANTOM5 Ensembl ENCODE dbSUPER 18.8 -968.6 -968619 8.2 HDGF PKNOX1 FOXA2 MLX ARNT ZFP64 ARID4B SIN3A YBX1 FEZF1 ENSG00000270184 RNU1-103P KLHL36 RN7SL381P ZDHHC7 CRISPLD2 GSE1 TLDC1 ENSG00000269898 ENSG00000261177
GH16H084498 1.3 ENCODE dbSUPER 22 +51.1 51102 8.4 HDGF PKNOX1 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B SLC30A9 ZNF143 ZNF207 TLDC1 ENSG00000260300 KLHL36 ATP2C2-AS1 HSBP1 ENSG00000261243
GH16H084592 2 FANTOM5 Ensembl ENCODE dbSUPER 14.2 -47.9 -47927 18.6 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF766 ZNF143 ZNF207 ENSG00000261243 KLHL36 ENSG00000260859 COTL1 TAF1C ZDHHC7 TLDC1 USP10 KIAA0513 ENSG00000261471
GH16H085333 1.9 FANTOM5 Ensembl ENCODE dbSUPER 10.6 -781.2 -781225 2.7 ATF1 ARNT ZBTB7B YY1 TCF12 ZNF121 ZNF766 GLIS2 GATA2 ELK1 ENSG00000270184 ENSG00000261243 RNU1-103P RN7SL381P TLDC1 LOC101928502 PIR52880
GH16H085025 1.7 FANTOM5 ENCODE dbSUPER 10.2 -474.1 -474065 5.4 HDGF PKNOX1 MLX ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF143 ZNF207 ENSG00000261243 TAF1C KLHL36 KIAA0513 RN7SL381P ZDHHC7 ENSG00000270184 RNU1-103P HSDL1 TLDC1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TLDC1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TLDC1 Gene

Genomic Locations for TLDC1 Gene
chr16:84,476,360-84,554,045
(GRCh38/hg38)
Size:
77,686 bases
Orientation:
Minus strand
chr16:84,509,966-84,587,639
(GRCh37/hg19)

Genomic View for TLDC1 Gene

Genes around TLDC1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TLDC1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TLDC1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TLDC1 Gene

Proteins for TLDC1 Gene

  • Protein details for TLDC1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6P9B6-TLDC1_HUMAN
    Recommended name:
    TLD domain-containing protein 1
    Protein Accession:
    Q6P9B6
    Secondary Accessions:
    • Q8IZ64
    • Q9HCG3
    • Q9NTE8

    Protein attributes for TLDC1 Gene

    Size:
    456 amino acids
    Molecular mass:
    50994 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAB13435.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

neXtProt entry for TLDC1 Gene

Post-translational modifications for TLDC1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for TLDC1 Gene

Domains & Families for TLDC1 Gene

Gene Families for TLDC1 Gene

Human Protein Atlas (HPA):
  • Plasma proteins
  • Predicted intracellular proteins

Protein Domains for TLDC1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for TLDC1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TLDC1: view

No data available for UniProtKB/Swiss-Prot for TLDC1 Gene

Function for TLDC1 Gene

Phenotypes From GWAS Catalog for TLDC1 Gene

Gene Ontology (GO) - Molecular Function for TLDC1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 16189514
genes like me logo Genes that share ontologies with TLDC1: view

Phenotypes for TLDC1 Gene

GenomeRNAi human phenotypes for TLDC1:
genes like me logo Genes that share phenotypes with TLDC1: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for TLDC1 Gene

Localization for TLDC1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for TLDC1 gene
Compartment Confidence
lysosome 5
nucleus 3
cytosol 3
plasma membrane 1
mitochondrion 1
peroxisome 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Cytosol (2)
  • Nucleoli (2)
  • Nucleus (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for TLDC1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005765 lysosomal membrane IDA 17897319
genes like me logo Genes that share ontologies with TLDC1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for TLDC1 Gene

Pathways & Interactions for TLDC1 Gene

SuperPathways for TLDC1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TLDC1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:1903204 negative regulation of oxidative stress-induced neuron death IEA --
genes like me logo Genes that share ontologies with TLDC1: view

No data available for Pathways by source and SIGNOR curated interactions for TLDC1 Gene

Drugs & Compounds for TLDC1 Gene

No Compound Related Data Available

Transcripts for TLDC1 Gene

Unigene Clusters for TLDC1 Gene

TBC/LysM-associated domain containing 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for TLDC1 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b ^ 3a · 3b ^ 4a · 4b · 4c ^ 5 ^ 6a · 6b · 6c · 6d · 6e ^ 7a · 7b · 7c ^ 8a · 8b ^ 9 ^ 10a · 10b · 10c ^
SP1: - - - - -
SP2: - - - -
SP3:
SP4: - - -
SP5: - - - -
SP6: - - -
SP7:
SP8: -
SP9: - -
SP10:

ExUns: 11
SP1:
SP2:
SP3:
SP4:
SP5:
SP6:
SP7:
SP8:
SP9:
SP10:

Relevant External Links for TLDC1 Gene

GeneLoc Exon Structure for
TLDC1
ECgene alternative splicing isoforms for
TLDC1

Expression for TLDC1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TLDC1 Gene

mRNA differential expression in normal tissues according to GTEx for TLDC1 Gene

This gene is overexpressed in Esophagus - Mucosa (x4.1).

Protein differential expression in normal tissues from HIPED for TLDC1 Gene

This gene is overexpressed in Peripheral blood mononuclear cells (8.9) and Breast (7.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for TLDC1 Gene



Protein tissue co-expression partners for TLDC1 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of TLDC1 Gene:

TLDC1

SOURCE GeneReport for Unigene cluster for TLDC1 Gene:

Hs.288274

Evidence on tissue expression from TISSUES for TLDC1 Gene

  • Nervous system(4.5)
  • Kidney(4.1)
genes like me logo Genes that share expression patterns with TLDC1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for TLDC1 Gene

Orthologs for TLDC1 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for TLDC1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TLDC1 33 34
  • 98.9 (n)
dog
(Canis familiaris)
Mammalia TLDC1 33 34
  • 81.61 (n)
cow
(Bos Taurus)
Mammalia TLDC1 33 34
  • 79.05 (n)
rat
(Rattus norvegicus)
Mammalia Tldc1 33
  • 74.86 (n)
mouse
(Mus musculus)
Mammalia Tldc1 33 16 34
  • 73.42 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia TLDC1 34
  • 62 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia TLDC1 34
  • 46 (a)
OneToOne
chicken
(Gallus gallus)
Aves KIAA1609 33 34
  • 64.69 (n)
lizard
(Anolis carolinensis)
Reptilia TLDC1 34
  • 53 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia tldc1 33
  • 57.76 (n)
zebrafish
(Danio rerio)
Actinopterygii tldc1 33 34
  • 54.98 (n)
fruit fly
(Drosophila melanogaster)
Insecta CG5149 34
  • 31 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea eak-7 34
  • 23 (a)
OneToOne
thale cress
(Arabidopsis thaliana)
eudicotyledons AT5G06260 33
  • 41.98 (n)
rice
(Oryza sativa)
Liliopsida Os12g0157200 33
  • 48.77 (n)
sea squirt
(Ciona savignyi)
Ascidiacea -- 34
  • 45 (a)
OneToOne
Species where no ortholog for TLDC1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for TLDC1 Gene

ENSEMBL:
Gene Tree for TLDC1 (if available)
TreeFam:
Gene Tree for TLDC1 (if available)

Paralogs for TLDC1 Gene

Paralogs for TLDC1 Gene

(3) SIMAP similar genes for TLDC1 Gene using alignment to 7 proteins:

genes like me logo Genes that share paralogs with TLDC1: view

Variants for TLDC1 Gene

Sequence variations from dbSNP and Humsavar for TLDC1 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1000054319 -- 84,503,292(+) CCACG(A/G)GTTGG intron-variant
rs1000130190 -- 84,497,657(+) AGTAC(A/C)GATAA intron-variant
rs1000185260 -- 84,506,222(+) AACAG(C/T)TTTTT upstream-variant-2KB
rs1000239932 -- 84,482,439(+) CCAGC(A/C)CCGGC intron-variant
rs1000273711 -- 84,484,117(+) CTGCG(A/G)AGCAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TLDC1 Gene

Variant ID Type Subtype PubMed ID
nsv833311 CNV loss 17160897
nsv573454 CNV loss 21841781
nsv573430 CNV loss 21841781
nsv573425 CNV loss 21841781
nsv483044 CNV gain 15286789
nsv457600 CNV loss 19166990
nsv1065249 CNV gain 25217958
nsv1064308 CNV loss 25217958
nsv1061004 CNV loss 25217958
nsv1059640 CNV loss 25217958
nsv1058049 CNV loss 25217958
esv3892929 CNV loss 25118596
esv3892928 CNV loss 25118596
esv3639429 CNV gain 21293372
esv3389512 CNV insertion 20981092
esv3303917 CNV mobile element insertion 20981092
esv2714831 CNV deletion 23290073
esv2714830 CNV deletion 23290073
esv2714828 CNV deletion 23290073
dgv549e214 CNV gain 21293372
dgv5262n54 CNV loss 21841781
dgv3057n100 CNV loss 25217958
dgv169n21 CNV loss 19592680

Variation tolerance for TLDC1 Gene

Residual Variation Intolerance Score: 96.9% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 5.12; 69.22% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TLDC1 Gene

Human Gene Mutation Database (HGMD)
TLDC1
SNPedia medical, phenotypic, and genealogical associations of SNPs for
TLDC1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TLDC1 Gene

Disorders for TLDC1 Gene

Relevant External Links for TLDC1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TLDC1

No disorders were found for TLDC1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TLDC1 Gene

Publications for TLDC1 Gene

  1. Prediction of the coding sequences of unidentified human genes. XVIII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PMID: 10997877) Nagase T … Ohara O (DNA research : an international journal for rapid publication of reports on genes and genomes 2000) 2 3 4 60
  2. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 60
  3. Defining the Protein-Protein Interaction Network of the Human Protein Tyrosine Phosphatase Family. (PMID: 27432908) Li X … Wang W (Molecular & cellular proteomics : MCP 2016) 3 60
  4. Interactions of the Antiviral Factor Interferon Gamma-Inducible Protein 16 (IFI16) Mediate Immune Signaling and Herpes Simplex Virus-1 Immunosuppression. (PMID: 25693804) Diner BA … Cristea IM (Molecular & cellular proteomics : MCP 2015) 3 60
  5. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin EL … Gygi SP (Cell 2015) 3 60

Products for TLDC1 Gene

Sources for TLDC1 Gene

Content
Loading form....