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Aliases for TLDC1 Gene

Aliases for TLDC1 Gene

  • TBC/LysM-Associated Domain Containing 1 2 3 5
  • KIAA1609 2 3 4
  • TBC/LysM-Associated Domain-Containing Protein 1 3 4
  • TLD Domain Containing 1 2 3
  • TLD Domain-Containing Protein 1 3

External Ids for TLDC1 Gene

Previous HGNC Symbols for TLDC1 Gene

  • KIAA1609

Summaries for TLDC1 Gene

GeneCards Summary for TLDC1 Gene

TLDC1 (TBC/LysM-Associated Domain Containing 1) is a Protein Coding gene. An important paralog of this gene is NCOA7.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TLDC1 Gene

Genomics for TLDC1 Gene

Regulatory Elements for TLDC1 Gene

Enhancers for TLDC1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16F084498 0.9 Ensembl ENCODE 22 +51.1 51102 8.4 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 TLDC1 ZDHHC7 ENSG00000261243 KLHL36 LOC105371374 HSBP1
GH16F084566 1.1 Ensembl ENCODE 9.6 -14.8 -14780 5.4 HDGF PKNOX1 ARID4B SIN3A DMAP1 ZNF48 GATA2 ZNF207 FOS SP5 COTL1 KLHL36 USP10 TLDC1 GC16P084565 ENSG00000261471
GH16F084584 1 Ensembl ENCODE 7.2 -31.8 -31818 3.1 HDGF PKNOX1 ARNT ARID4B SIN3A DMAP1 ZNF143 FOS ZNF263 SP3 COTL1 TLDC1 ENSG00000260788 ENSG00000261471 GC16P084565
GH16F084507 0.7 ENCODE 5.7 +46.4 46373 0.7 ZNF664 MXI1 POLR2A EED JUNB ETV6 SPI1 TLDC1 ENSG00000261243
GH16F084592 1.4 FANTOM5 Ensembl ENCODE 5.6 -48.3 -48283 19.3 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 ZFP64 ARID4B SIN3A DMAP1 YY1 ENSG00000261243 KLHL36 COTL1 ZDHHC7 USP10 ENSG00000260859 HSDL1 KIAA0513 ENSG00000261471 OSGIN1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around TLDC1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TLDC1 Gene

84,476,360 bp from pter
84,554,045 bp from pter
77,686 bases
Minus strand

Genomic View for TLDC1 Gene

Genes around TLDC1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TLDC1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TLDC1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TLDC1 Gene

Proteins for TLDC1 Gene

  • Protein details for TLDC1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    TLD domain-containing protein 1
    Protein Accession:
    Secondary Accessions:
    • Q8IZ64
    • Q9HCG3
    • Q9NTE8

    Protein attributes for TLDC1 Gene

    456 amino acids
    Molecular mass:
    50994 Da
    Quaternary structure:
    No Data Available
    • Sequence=BAB13435.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

neXtProt entry for TLDC1 Gene

Post-translational modifications for TLDC1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for TLDC1 Gene

Domains & Families for TLDC1 Gene

Protein Domains for TLDC1 Gene


Suggested Antigen Peptide Sequences for TLDC1 Gene

Graphical View of Domain Structure for InterPro Entry



  • Contains 1 TLD domain.
  • Contains 1 TLD domain.
genes like me logo Genes that share domains with TLDC1: view

No data available for Gene Families for TLDC1 Gene

Function for TLDC1 Gene

Gene Ontology (GO) - Molecular Function for TLDC1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 16189514
genes like me logo Genes that share ontologies with TLDC1: view

Phenotypes for TLDC1 Gene

GenomeRNAi human phenotypes for TLDC1:
genes like me logo Genes that share phenotypes with TLDC1: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for TLDC1 Gene

Localization for TLDC1 Gene

Gene Ontology (GO) - Cellular Components for TLDC1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005765 lysosomal membrane IDA 17897319
genes like me logo Genes that share ontologies with TLDC1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for TLDC1 Gene

Pathways & Interactions for TLDC1 Gene

SuperPathways for TLDC1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TLDC1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:1903204 negative regulation of oxidative stress-induced neuron death IEA --
genes like me logo Genes that share ontologies with TLDC1: view

No data available for Pathways by source and SIGNOR curated interactions for TLDC1 Gene

Transcripts for TLDC1 Gene

Unigene Clusters for TLDC1 Gene

TBC/LysM-associated domain containing 1:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TLDC1 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b ^ 3a · 3b ^ 4a · 4b · 4c ^ 5 ^ 6a · 6b · 6c · 6d · 6e ^ 7a · 7b · 7c ^ 8a · 8b ^ 9 ^ 10a · 10b · 10c ^
SP1: - - - - -
SP2: - - - -
SP4: - - -
SP5: - - - -
SP6: - - -
SP8: -
SP9: - -

ExUns: 11

Relevant External Links for TLDC1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for TLDC1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TLDC1 Gene

mRNA differential expression in normal tissues according to GTEx for TLDC1 Gene

This gene is overexpressed in Esophagus - Mucosa (x4.1).

Protein differential expression in normal tissues from HIPED for TLDC1 Gene

This gene is overexpressed in Peripheral blood mononuclear cells (8.9) and Breast (7.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for TLDC1 Gene

Protein tissue co-expression partners for TLDC1 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of TLDC1 Gene:


SOURCE GeneReport for Unigene cluster for TLDC1 Gene:

genes like me logo Genes that share expression patterns with TLDC1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for TLDC1 Gene

Orthologs for TLDC1 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for TLDC1 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia TLDC1 34 35
  • 98.9 (n)
(Canis familiaris)
Mammalia TLDC1 34 35
  • 81.61 (n)
(Bos Taurus)
Mammalia TLDC1 34 35
  • 79.05 (n)
(Rattus norvegicus)
Mammalia Tldc1 34
  • 74.86 (n)
(Mus musculus)
Mammalia Tldc1 34 16 35
  • 73.42 (n)
(Ornithorhynchus anatinus)
Mammalia TLDC1 35
  • 62 (a)
(Monodelphis domestica)
Mammalia TLDC1 35
  • 46 (a)
(Gallus gallus)
Aves KIAA1609 35 34
  • 64.69 (n)
(Anolis carolinensis)
Reptilia TLDC1 35
  • 53 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia tldc1 34
  • 57.76 (n)
(Danio rerio)
Actinopterygii tldc1 34 35
  • 54.98 (n)
fruit fly
(Drosophila melanogaster)
Insecta CG5149 35
  • 31 (a)
(Caenorhabditis elegans)
Secernentea eak-7 35
  • 23 (a)
thale cress
(Arabidopsis thaliana)
eudicotyledons AT5G06260 34
  • 41.98 (n)
(Oryza sativa)
Liliopsida Os12g0157200 34
  • 48.77 (n)
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 45 (a)
Species where no ortholog for TLDC1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for TLDC1 Gene

Gene Tree for TLDC1 (if available)
Gene Tree for TLDC1 (if available)

Paralogs for TLDC1 Gene

Paralogs for TLDC1 Gene

(3) SIMAP similar genes for TLDC1 Gene using alignment to 7 proteins:

genes like me logo Genes that share paralogs with TLDC1: view

Variants for TLDC1 Gene

Sequence variations from dbSNP and Humsavar for TLDC1 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs10086 -- 84,476,649(-) ACTGC(A/G)TGATG utr-variant-3-prime
rs1044871 -- 84,479,791(-) CAGCC(A/T)GGTAG utr-variant-3-prime
rs1044874 -- 84,478,972(-) AGGGA(C/T)ATTGG utr-variant-3-prime
rs1052716 -- 84,476,416(-) ATATA(C/G)CGGGG utr-variant-3-prime
rs10719324 -- 84,481,348(+) GGCAA(-/C)CAGAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TLDC1 Gene

Variant ID Type Subtype PubMed ID
dgv169n21 CNV loss 19592680
dgv3057n100 CNV loss 25217958
dgv5262n54 CNV loss 21841781
dgv549e214 CNV gain 21293372
esv2714828 CNV deletion 23290073
esv2714830 CNV deletion 23290073
esv2714831 CNV deletion 23290073
esv3303917 CNV mobile element insertion 20981092
esv3389512 CNV insertion 20981092
esv3639429 CNV gain 21293372
esv3892928 CNV loss 25118596
esv3892929 CNV loss 25118596
nsv1058049 CNV loss 25217958
nsv1059640 CNV loss 25217958
nsv1061004 CNV loss 25217958
nsv1064308 CNV loss 25217958
nsv1065249 CNV gain 25217958
nsv457600 CNV loss 19166990
nsv483044 CNV gain 15286789
nsv573425 CNV loss 21841781
nsv573430 CNV loss 21841781
nsv573454 CNV loss 21841781
nsv833311 CNV loss 17160897

Variation tolerance for TLDC1 Gene

Residual Variation Intolerance Score: 96.9% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 5.12; 69.22% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TLDC1 Gene

Human Gene Mutation Database (HGMD)
SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TLDC1 Gene

Disorders for TLDC1 Gene

Relevant External Links for TLDC1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for TLDC1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TLDC1 Gene

Publications for TLDC1 Gene

  1. Prediction of the coding sequences of unidentified human genes. XVIII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PMID: 10997877) Nagase T. … Ohara O. (DNA Res. 2000) 2 3 4 64
  2. Interactions of the Antiviral Factor Interferon Gamma-Inducible Protein 16 (IFI16) Mediate Immune Signaling and Herpes Simplex Virus-1 Immunosuppression. (PMID: 25693804) Diner B.A. … Cristea I.M. (Mol. Cell Proteomics 2015) 3 64
  3. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3 64
  4. Panorama of ancient metazoan macromolecular complexes. (PMID: 26344197) Wan C. … Emili A. (Nature 2015) 3 64
  5. A census of human soluble protein complexes. (PMID: 22939629) Havugimana P.C. … Emili A. (Cell 2012) 3 64

Products for TLDC1 Gene

Sources for TLDC1 Gene

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