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Aliases for TISP43 Gene

Aliases for TISP43 Gene

  • Uncharacterized LOC150527 3

External Ids for TISP43 Gene

Previous GeneCards Identifiers for TISP43 Gene

  • GC02U901489
  • GC02P131044
  • GC02P131330

Summaries for TISP43 Gene

GeneCards Summary for TISP43 Gene

TISP43 (Uncharacterized LOC150527) is a Pseudogene. An important paralog of this gene is ENSG00000184761.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TISP43 Gene

Genomics for TISP43 Gene

Genomic Location for TISP43 Gene

Start:
130,570,829 bp from pter
End:
130,584,161 bp from pter
Size:
13,333 bases
Orientation:
Plus strand

Genomic View for TISP43 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TISP43 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TISP43 Gene

No data available for Regulatory Elements for TISP43 Gene

Proteins for TISP43 Gene

  • Protein details for TISP43 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    B9A019
    Recommended name:
    Protein LOC646743
    Protein Accession:
    B9A019
    Secondary Accessions:

    Protein attributes for TISP43 Gene

    Size:
    99 amino acids
    Molecular mass:
    11411 Da
    Quaternary structure:
    No Data Available
  • Protein details for TISP43 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    B9A030
    Recommended name:
    Protein LOC646743
    Protein Accession:
    B9A030
    Secondary Accessions:

    Protein attributes for TISP43 Gene

    Size:
    160 amino acids
    Molecular mass:
    17646 Da
    Quaternary structure:
    No Data Available
  • Protein details for TISP43 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    H7C364
    Recommended name:
    Protein LOC646743
    Protein Accession:
    H7C364
    Secondary Accessions:

    Protein attributes for TISP43 Gene

    Size:
    141 amino acids
    Molecular mass:
    15713 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TISP43 Gene

Proteomics data for TISP43 Gene at MOPED

Post-translational modifications for TISP43 Gene

No Post-translational modifications

Other Protein References for TISP43 Gene

No data available for DME Specific Peptides for TISP43 Gene

Domains for TISP43 Gene

Protein Domains for TISP43 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TISP43: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TISP43 Gene

Function for TISP43 Gene

Gene Ontology (GO) - Molecular Function for TISP43 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003824 catalytic activity --
GO:0004252 serine-type endopeptidase activity --
genes like me logo Genes that share ontologies with TISP43: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TISP43 Gene

Localization for TISP43 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TISP43 Gene

Pathways for TISP43 Gene

SuperPathways for TISP43 Gene

No Data Available

Interacting Proteins for TISP43 Gene

Gene Ontology (GO) - Biological Process for TISP43 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006508 proteolysis --
genes like me logo Genes that share ontologies with TISP43: view

No data available for Pathways by source for TISP43 Gene

Transcripts for TISP43 Gene

mRNA/cDNA for TISP43 Gene

(5) Additional mRNA sequences :
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TISP43 Gene

Uncharacterized LOC150527:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TISP43 Gene

No ASD Table

Relevant External Links for TISP43 Gene

GeneLoc Exon Structure for
TISP43

Expression for TISP43 Gene

mRNA expression in normal human tissues for TISP43 Gene

mRNA expression in normal human tissues for TISP43 Gene

mRNA differential expression in normal tissues according to GTEx for TISP43 Gene

This gene is overexpressed in Testis (50.6).

SOURCE GeneReport for Unigene cluster for TISP43 Gene Hs.125706

genes like me logo Genes that share expressions with TISP43: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for TISP43 Gene

Orthologs for TISP43 Gene

Evolution for TISP43 Gene

ENSEMBL:
Gene Tree for TISP43 (if available)
TreeFam:
Gene Tree for TISP43 (if available)

No data available for Orthologs for TISP43 Gene

Paralogs for TISP43 Gene

Paralogs for TISP43 Gene

Pseudogenes.org Pseudogenes for TISP43 Gene

genes like me logo Genes that share paralogs with TISP43: view

Variants for TISP43 Gene

Sequence variations from dbSNP and Humsavar for TISP43 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
rs934907 -- 130,581,494(+) CCCGC(A/T)GCCCT intron-variant
rs56381711 -- 130,569,445(+) GTCTA(A/G)CTCTG upstream-variant-2KB
rs62164877 -- 130,574,531(+) TGGTT(A/G)GGGAA intron-variant
rs62164879 -- 130,583,449(+) AGTCC(A/G)ATGCC nc-transcript-variant
rs62164880 -- 130,584,525(+) CCATG(C/T)TCTAG downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for TISP43 Gene

Variant ID Type Subtype PubMed ID
dgv1247e1 CNV Complex 17122850
dgv1250e1 CNV Complex 17122850
nsv428403 CNV Loss 18775914
nsv7327 OTHER Inversion 18451855
nsv875103 CNV Gain 21882294

Relevant External Links for TISP43 Gene

HapMap Linkage Disequilibrium report
TISP43

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TISP43 Gene

Disorders for TISP43 Gene

No disorders were found for TISP43 Gene.

No data available for UniProtKB/Swiss-Prot for TISP43 Gene

Publications for TISP43 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for TISP43 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate TISP43
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for TISP43
    • Block miRNA regulation of TISP43 using miScript Target Protectors

    Sources for TISP43 Gene

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