TIRAP Gene
protein-coding GIFtS : 59
GC11P125658
toll-interleukin 1 receptor (TIR) domain containing adaptor protein (Previous name: Toll-interleukin 1 receptor (TIR) domain-containing adaptor protein )Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
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Aliases & Descriptions for TIRAP
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases FLJ42305 2 MAL 3 Mal 1 , 2 OTTHUMP00000179130 2 OTTHUMP00000179132 2 wyatt 1 , 2
Descriptions Adaptor protein Wyatt 3 MyD88 adapter-like protein 2 , 3 TIR domain-containing adapter protein 3 Toll-interleukin 1 receptor (TIR) domain-containing adaptor protein 1 Toll-interleukin 1 receptor domain-containing adaptor protein 2 Toll-like receptor adaptor protein 2 adapter protein wyatt 2 toll-interleukin 1 receptor (TIR) domain containing adaptor protein 2 toll-interleukin 1 receptor domain containing adaptor protein 1
Search outside databases for aliases for TIRAP genePrevious GC identifers: GC11P128153 GC11P127665 GC11P126186 GC11P125690
Summaries for TIRAP (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for TIRAP : The innate immune system recognizes microbial pathogens through Toll-like receptors (TLRs), whichidentify pathogen-associated molecular patterns. Different TLRs recognize differentpathogen-associated molecular patterns and all TLRs have a Toll-interleukin 1 receptor (TIR)domain, which is responsible for signal transduction. The protein encoded by this gene is a TIRadaptor protein involved in the TLR4 signaling pathway of the immune system. It activatesNF-kappa-B, MAPK1, MAPK3 and JNK, which then results in cytokine secretion and the inflammatoryresponse. Alternative splicing of this gene results in several transcript variants; however, notall variants have been fully described. [provided by RefSeq] UniProtKB/Swiss-Prot: TIRAP_HUMAN, P58753 Function : Adapter involved in the TLR4 signaling pathway in the innate immune response. Acts viaIRAK2 and TRAF-6, leading to the activation of NF-kappa-B, MAPK1, MAPK3 and JNK, resulting incytokine secretion and the inflammatory response
Genomic Location for TIRAP
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the TIRAP gene Entrez Gene cytogenetic band: 11q24.2 Ensembl cytogenetic band: 11q24.2 HGNC cytogenetic band: 11q24.2 TIRAP Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 11 GeneLoc Exon Structure
GeneLoc location for GC11P125658:
(about GC identifiers )
Start:
125,658,192 bp from pter
End:
125,670,038 bp from pter
Size:
11,847 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000011.8 NT_033899.7 Proteins for TIRAP
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: TIRAP_HUMAN, P58753 (See
protein sequence )Recommended Name: Toll/interleukin-1 receptor domain-containing adapter protein Size : 221 amino acids; 23883 Da
Subunit : Homodimer. Also forms heterodimers with MyD88. Binds to TLR4 and IRAK2 via theirrespective TIR domains. Binds to PKR and TBK1. Does not interact with IRAK1, nor TLR9
Subcellular location : Cytoplasm (By similarity)
Secondary accessions : B3KW65 Q56UI0 Q8N5E5Alternative splicing : 3 isoforms : P58753-1 P58753-2 P58753-3
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_001034750.1 NP_683708.1 ENSEMBL proteins: ENSP00000279992 ENSP00000376447 ENSP00000376446 ENSP00000376445 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 3 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for TIRAP: Assays for TIRAP:
Protein
Domains/ Families for TIRAP(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P58753 ProtoNet protein and cluster: P58753
UniProtKB/Swiss-Prot: TIRAP_HUMAN, P58753 Similarity : Contains 1 TIR domain
Gene Function for TIRAP
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_001039661 Applied Biosystems Silencer ® siRNAs for TIRAP Sigma-Aldrich siRNA and siRNA Panels for TIRAP Sigma-Aldrich shRNA for TIRAP Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001039661                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001039661                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001039661  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_148910 UniProtKB/Swiss-Prot: TIRAP_HUMAN, P58753 Function : Adapter involved in the TLR4 signaling pathway in the innate immune response. Acts viaIRAK2 and TRAF-6, leading to the activation of NF-kappa-B, MAPK1, MAPK3 and JNK, resulting incytokine secretion and the inflammatory response
3 MGI mutant phenotypes (inferred from 3 alleles ) (MGI details for Tirap) :2 Gene Ontology (GO) molecular function terms (links to tree view) :
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Pathways & Interactions for TIRAP
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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3 Sigma-Aldrich "Your Favorite Gene" Pathways for TIRAP (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for TIRAP 5/47 Interacting proteins for TIRAP (P58753 1 , 2 ENSP00000279992 3 ) via UniProtKB, MINT, and/or STRING (see all 47
)Interactant Interaction Details GeneCard External ID(s) TLR4 O00206 1 , ENSP00000363089 3 EBI-528644, EBI-528701 STRING (score=.999 ) IRAK2 O43187 1 , ENSP00000256458 3 EBI-528644, EBI-447733 STRING (score=.949 ) MYD88 Q99836 1 , 2 EBI-528644, EBI-447677 MINT-4950432 MINT-4950481 EBI-528644, EBI-447677 MINT-4950432 MINT-4950481 TICAM2 Q86XR7 1 EBI-528644, EBI-525927 MYD88 Q99836 1 , 2 EBI-528644, EBI-447677 MINT-4950432 MINT-4950481 EBI-528644, EBI-447677 MINT-4950432 MINT-4950481
About this table 4 Gene Ontology (GO) biological process terms (links to tree view) :
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Drugs & Compounds for TIRAP (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for TIRAP 1 Novoseek chemical compound relationship for TIRAP gene
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Transcripts for TIRAP(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
OriGene , Expression Assays from Applied Biosystems )About This Section
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_001039661 Sigma-Aldrich siRNA and siRNA Panels for TIRAP Sigma-Aldrich shRNA for TIRAP Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001039661 NM_148910
REFSEQ mRNAs for TIRAP gene (2 alternative transcripts): NM_001039661.1 NM_148910.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001039661 NM_148910
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001039661                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001039661                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001039661  
Additional cDNA sequence: AB446477.1 AF378129.1 AF406652.1 AK124298.1 AK313147.1 AY576785.1 AY576786.1 AY576787.1 BC032474.1
6 DOTS entries : DT.100754334 DT.92012742 DT.95096907 DT.100754331 DT.408184 DT.91748566
24/65 AceView cDNA sequences (see all 65
):BU163392 BQ877571 NM_052887 AA322884 AA135034 BU150555 BM762171 BX283452 AA346928 NM_148910 BM762042 AF410783 BQ686094 BQ687079 BM762452 CK430181 BQ651057 BQ647099 BQ651026 AF406652 AA384704 AA242959 BQ649886 BQ645814
highest scoring ESTs for TIRAP :AA135034 BC032474 BF960163 BF960384 BI252480 BQ019169 BQ220785 BQ422626 BQ645814 BQ645991
Unigene Cluster for TIRAP: Toll-interleukin 1 receptor (TIR) domain containing adaptor protein Hs.537126 [show with all ESTs ] Unigene Representative Sequence: NM_001039661 GeneLoc Exon Structure 5/11 Alternative Splicing Database (ASD) splice patterns (SP) for TIRAP (see all 11
) ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3a · 3b · 3c ^ 4 ^ 5a · 5b ^ 6a · 6b · 6c · 6d ^ 7 ^ 8a · 8b · 8c · 8d ^ 9a · 9b · 9c SP1 :         -               -   -   -   -           -         SP2 :         -       -         -   -   -   -           -         SP3 :         -               -     -   -   -                 SP4 :         -   -   -   -         -   -   -   -           -         SP5 :         -               -   -   -   -                  
About this scheme ECgene alternative splicing isoforms for TIRAP 4 Ensembl transcripts including schematic representations : ENST00000279992
ENST00000392680
ENST00000392679
ENST00000392678
Expression for TIRAP
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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TIRAP expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for TIRAP 1 / 2 / 3
8 probe-sets matching TIRAP gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: --SOURCE GeneReport for Unigene cluster: Hs.537126 UniProtKB/Swiss-Prot: TIRAP_HUMAN, P58753 Tissue specificity : Highly expressed in liver, kidney, spleen, skeletal muscle and heart. Alsodetected in peripheral blood leukocytes, lung, placenta, small intestine, thymus, colon and brain
Orthologs for TIRAP
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for TIRAP gene from 5/7 species (see all 7
)
About this table Species with no ortholog for TIRAP ENSEMBL Gene Tree for TIRAP Paralogs for TIRAP (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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--
SNPs/Variants for TIRAP (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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UniProtKB/Swiss-Prot: TIRAP_HUMAN, P58753 Polymorphism : Genetic variation in TIRAP can influence susceptibility or resistance to invasivepneumococcal disease, bacteremia, malaria and tuberculosi
HapMap Linkage Disequilibrium images for TIRAP (up to first 250kb)
Disorders & Mutations for TIRAP
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 606252
2 Novoseek disease relationships for TIRAP gene
About this table Human Gene Mutation Database : TIRAP Genetic Association Database: TIRAP Human Genome Epidemiology Navigator: TIRAP (11 documents)
Medical News for TIRAP (Possibly Related Articles in
Doctor's Guide )
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--
Publications for TIRAP (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/72 PubMed articles for TIRAP gene (see all 72
): Mal (MyD88-adapter-like) is required for Toll-like receptor-4 signal transduction. (PubMed id 11544529) 1, 2, 3, 4 Fitzgerald K.A....O'Neill L.A. (2001) TIRAP: an adapter molecule in the Toll signaling pathway. (PubMed id 11526399) 2, 3, 4 Horng T.... Medzhitov R. (2001) The interaction of four genes in the inflammation pathway significantly predicts prostate cancer risk. (PubMed id 16284379) 1, 3, 6 Xu J....Gronberg H. (2005) Natural selection in the TLR-related genes in the course of primate evolution. (PubMed id 18810425) 3, 4 Nakajima T....Kimura A. (2008) A Mal functional variant is associated with protection against invasive pneumococcal disease, bacteremia, malaria and tuberculosis. (PubMed id 17322885) 3, 4 Khor C.C....Hill A.V.S. (2007) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Toll/IL-1 receptor domain-containing adaptor inducing IFN-beta (TRIF) associates with TNF receptor-associated factor 6 and TANK-binding kinase 1, and activates two distinct transcription factors, NF-kappa B and IFN-regulatory factor-3, in the Toll-like receptor signaling. (PubMed id 14530355) 3, 4 Sato S....Akira S. (2003) Tyrosine phosphorylation of MyD88 adapter-like (Mal) is critical for signal transduction and blocked in endotoxin tolerance. (PubMed id 18070880) 1, 3 Piao W....Medvedev A.E. (2008) MyD88 adapter-like (Mal) is phosphorylated by Bruton's tyrosine kinase during TLR2 and TLR4 signal transduction. (PubMed id 16439361) 1, 3 Gray P....O'Neill L.A. (2006) TIRAP (MAL) S180L polymorphism is a common protective factor against developing tuberculosis and systemic lupus erythematosus. (PubMed id 18417424) 1, 3 Castiblanco J....Anaya J.M. (2008)
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Genome Databases showing TIRAP
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing TIRAP
(According to HUGE )
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--
Specialized Databases showing TIRAP (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Name Description
SeattleSNPs http://pga.gs.washington.edu/data/tirap/
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-- Services for TIRAP (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for TIRAP:
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