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Aliases for TIPARP-AS1 Gene

Subcategory (RNA class) for TIPARP-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TIPARP-AS1 Gene

  • TIPARP Antisense RNA 1 2 3 5
  • TIPARP Antisense RNA 1 (Non-Protein Coding) 2

External Ids for TIPARP-AS1 Gene

Previous GeneCards Identifiers for TIPARP-AS1 Gene

  • GC03M156392

Summaries for TIPARP-AS1 Gene

GeneCards Summary for TIPARP-AS1 Gene

TIPARP-AS1 (TIPARP Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TIPARP-AS1 Gene

Genomics for TIPARP-AS1 Gene

Regulatory Elements for TIPARP-AS1 Gene

Enhancers for TIPARP-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F156760 1.4 FANTOM5 Ensembl ENCODE 17.8 -87.2 -87188 5.5 HDGF PKNOX1 CBX3 THRB CREM ZNF680 ZBTB11 JUNB SMARCA4 PBX2 LINC00886 TIPARP-AS1 LEKR1 GC03P156804 METTL15P1
GH03F156629 1 Ensembl ENCODE 21.5 +45.0 45008 1.8 SIX4 JUN TEAD4 INSM2 BCL11B ZNF2 RFX5 HIC1 ZNF664 SCRT2 TIPARP-AS1 TIPARP SSR3 LINC00886 GC03P156555
GH03F156625 0.9 ENCODE 23.1 +49.5 49465 0.9 CBX3 INSM2 RARA SMARCC2 FOS EGR2 SMARCC1 USF2 CEBPB ZEB2 TIPARP-AS1 TIPARP SSR3 LINC00886 GC03P156555
GH03F156604 1.2 Ensembl ENCODE 17.3 +69.6 69642 2.7 PKNOX1 ATF1 ARNT YY1 FOS JUNB SMARCB1 MBD2 SMARCA4 PBX2 TIPARP-AS1 SSR3 TIPARP METTL15P1 ENSG00000272990 GC03P156555
GH03F156673 1.7 FANTOM5 Ensembl ENCODE 10.5 -4.8 -4798 14.4 CREB3L1 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC TBX21 LINC00886 LEKR1 CCNL1 SSR3 TIPARP-AS1 TIPARP PIR33904 METTL15P1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TIPARP-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for TIPARP-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001377596 113 4001 CREB3L1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC TBX21 ZNF610

Genomic Location for TIPARP-AS1 Gene

Chromosome:
3
Start:
156,671,862 bp from pter
End:
156,675,713 bp from pter
Size:
3,852 bases
Orientation:
Minus strand

Genomic View for TIPARP-AS1 Gene

Genes around TIPARP-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TIPARP-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TIPARP-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TIPARP-AS1 Gene

Proteins for TIPARP-AS1 Gene

Post-translational modifications for TIPARP-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TIPARP-AS1 Gene

Domains & Families for TIPARP-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TIPARP-AS1 Gene

Function for TIPARP-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TIPARP-AS1 Gene

Localization for TIPARP-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TIPARP-AS1 Gene

Pathways & Interactions for TIPARP-AS1 Gene

SuperPathways for TIPARP-AS1 Gene

No Data Available

Interacting Proteins for TIPARP-AS1 Gene

Gene Ontology (GO) - Biological Process for TIPARP-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TIPARP-AS1 Gene

Transcripts for TIPARP-AS1 Gene

mRNA/cDNA for TIPARP-AS1 Gene

(3) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TIPARP-AS1 Gene

TIPARP antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TIPARP-AS1 Gene

No ASD Table

Relevant External Links for TIPARP-AS1 Gene

GeneLoc Exon Structure for
TIPARP-AS1
ECgene alternative splicing isoforms for
TIPARP-AS1

Expression for TIPARP-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TIPARP-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TIPARP-AS1 Gene

This gene is overexpressed in Testis (x18.3).

SOURCE GeneReport for Unigene cluster for TIPARP-AS1 Gene:

Hs.12813
genes like me logo Genes that share expression patterns with TIPARP-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TIPARP-AS1 Gene

Orthologs for TIPARP-AS1 Gene

Evolution for TIPARP-AS1 Gene

ENSEMBL:
Gene Tree for TIPARP-AS1 (if available)
TreeFam:
Gene Tree for TIPARP-AS1 (if available)

No data available for Orthologs for TIPARP-AS1 Gene

Paralogs for TIPARP-AS1 Gene

No data available for Paralogs for TIPARP-AS1 Gene

Variants for TIPARP-AS1 Gene

Sequence variations from dbSNP and Humsavar for TIPARP-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs111363283 -- 156,673,259(+) AACAA(C/T)CTAAT nc-transcript-variant, upstream-variant-2KB
rs112911344 -- 156,675,078(+) GCGCC(C/T)GCCCC intron-variant, nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime
rs113621060 -- 156,674,427(+) CGCGC(A/G)CCTCC nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime
rs113720474 -- 156,675,703(+) GCGGG(A/C)GGGCA intron-variant, nc-transcript-variant, upstream-variant-2KB
rs113804627 -- 156,673,215(+) AGCAA(C/T)AAATA nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for TIPARP-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv954498 CNV duplication 24416366

Relevant External Links for TIPARP-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TIPARP-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TIPARP-AS1 Gene

Disorders for TIPARP-AS1 Gene

Relevant External Links for TIPARP-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TIPARP-AS1

No disorders were found for TIPARP-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TIPARP-AS1 Gene

Publications for TIPARP-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for TIPARP-AS1 Gene

Sources for TIPARP-AS1 Gene

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