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Aliases & Descriptions for TIMP4
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| | | Descriptions |
|---|
| TIMP metallopeptidase inhibitor 4 2 | | Tissue inhibitor of metalloproteinases 4 3 | | tissue inhibitor of metalloproteinase 4 1, 2 |
|
| | Search outside databases for aliases for TIMP4 genePrevious GC identifers: GC03M012123 GC03M012038 |
Summaries for TIMP4(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for TIMP4: This gene belongs to the TIMP gene family. The proteins encoded by this gene family are inhibitors of the matrix metalloproteinases, a group of peptidases involved in degradation of the extracellular matrix. The secreted, netrin domain-containing protein encoded by this gene is involved in regulation of platelet aggregation and recruitment and may play role in hormonal regulation and endometrial tissue remodeling. [provided by RefSeq] UniProtKB/Swiss-Prot: TIMP4_HUMAN, Q99727Function: Complexes with metalloproteinases (such as collagenases) and irreversibly inactivates them. Known to act on MMP-1, MMP-2, MMP-3, MMP-7 and MMP-9Gene Wiki entry for TIMP4 |
Genomic Location for TIMP4
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the TIMP4 gene 
Entrez Gene cytogenetic band: 3p25 Ensembl cytogenetic band: 3p25.2 HGNC cytogenetic band: 3p25TIMP4 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 3 GeneLoc Exon Structure GeneLoc location for GC03M012169:
(about GC identifiers)
Start:
|
12,169,568 bp from pter |
End:
|
12,175,851 bp from pter |
Size:
|
6,284 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000003.10 NT_022517.17
| Proteins for TIMP4
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: TIMP4_HUMAN, Q99727 (See
protein sequence)Recommended Name: Metalloproteinase inhibitor 4 precursor Size: 224 amino acids; 25503 Da
Subcellular location: SecretedREFSEQ proteins: NP_003247.1
ENSEMBL proteins: ENSP00000287814
Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: TIMP4 
2 Gene Ontology (GO) cellular component terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005576 | extracellular region |
NAS | -- | | GO:0005578 | proteinaceous extracellular matrix |
IEA | -- | About this table
Antibodies for TIMP4: Assays for TIMP4: | Protein
Domains/ Families for TIMP4(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q99727
ProtoNet protein and cluster: Q99727 1 Blocks protein family: IPB001820 Tissue inhibitor of metalloproteinase
UniProtKB/Swiss-Prot: TIMP4_HUMAN, Q99727Similarity: Belongs to the protease inhibitor I35 (TIMP) familySimilarity: Contains 1 NTR domain | Gene Function for TIMP4
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003256
Applied Biosystems Silencer® siRNAs for TIMP4
Sigma-Aldrich siRNA for TIMP4  Sigma-Aldrich shRNA Panels and shRNA for TIMP4  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_003256                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_003256                                  untagged cDNA clone in CMV expression vector: NM_003256 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_003256
UniProtKB/Swiss-Prot: TIMP4_HUMAN, Q99727Function: Complexes with metalloproteinases (such as collagenases) and irreversibly inactivates them. Known to act on MMP-1, MMP-2, MMP-3, MMP-7 and MMP-9Genatlas biochemistry entry for TIMP4:matrix metalloproteinase,tissue inhibitor 4,abundantly expressed only in adult heart maybe embedded in intron V of SYN21 MGI mutant phenotype (inferred from 1 allele ) (MGI details for Timp4):
3 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for TIMP4
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| 1 Sigma-Aldrich "Your Favorite Gene" Pathway for TIMP4 (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for TIMP4 
5/19 Interacting proteins for TIMP4 (ENSP000002878143) via UniProtKB, MINT, and/or STRING (see all 19
)About this table
1 Gene Ontology (GO) biological process term (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0008150 | biological_process |
ND | -- | About this table
|
Drugs & Compounds for TIMP4(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for TIMP4 2 Novoseek chemical compound relationships for TIMP4 gene
About this table
|
Transcripts for TIMP4(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003256
Sigma-Aldrich siRNA for TIMP4  Sigma-Aldrich shRNA Panels and shRNA for TIMP4  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_003256 REFSEQ mRNAs for TIMP4 gene: NM_003256.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_003256               OriGene GFP tagged cDNA clone in CMV expression vector: NM_003256                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_003256                                  untagged cDNA clone in CMV expression vector: NM_003256  Additional cDNA sequence: AK313018.1 BC010553.1 BT019627.1 U76456.1 1 DOTS entry: DT.308421 24/50 AceView cDNA sequences (see all 50
):BU732949 AW963378 BM759178 BC010553 BU615814 BM707859 AW292470 NM_003256 CD245370 BP381456 AI637967 CD518333 BX103242 CA424098 AW293304 U76456 AW196583 CB265444 BM129238 CB995893 AI359841 BM740043 BG910254 BE788008
highest scoring ESTs for TIMP4:U76456 AA193414 BC010553 BF346229 BG819996 BG910254 BI752578 CB142663 CB265444 CB992438 Unigene Cluster for TIMP4: TIMP metallopeptidase inhibitor 4 Hs.591665 [show with all ESTs]Unigene Representative Sequence: BC010553
GeneLoc Exon Structure
1 Ensembl transcript including schematic representation: ENST00000287814
|
Expression for TIMP4
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| TIMP4 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for TIMP4
1 / 2 / 3 4 probe-sets matching TIMP4 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: AGATGGTATA
SOURCE GeneReport for Unigene cluster: Hs.591665
Expression variation in blood from EXPOLDB for TIMP4 UniProtKB/Swiss-Prot: TIMP4_HUMAN, Q99727Tissue specificity: Abundant in heart and present at low levels in many other tissues |
Orthologs for TIMP4
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for TIMP4 gene from 5 species
About this table Species with no ortholog for TIMP4
ENSEMBL Gene Tree for TIMP4 | Paralogs for TIMP4(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for TIMP4 gene
- TIMP32 TIMP12 TIMP22
|
SNPs/Variants for TIMP4(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
| -- |
Disorders & Mutations for TIMP4
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 601915
10/14 Novoseek disease relationships for TIMP4 gene (see all 14
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| neovascularization |
23.56 |
1 |
9791730 (1) |
| metastasis |
22.17 |
4 |
12828172 (2), 15523699 (1) |
| cancer |
13.72 |
9 |
17873896 (3), 15928670 (1), 9190892 (1), 18336787 (1) (see all 7) |
| arthritis |
13.38 |
4 |
12483743 (3) |
| tumors |
12.99 |
19 |
12798711 (3), 17873896 (2), 15713681 (2), 17009974 (2) (see all 11) |
| breast cancer |
12.82 |
14 |
12828172 (3), 11289097 (3), 11178975 (2), 9190892 (1) (see all 5) |
| adenocarcinoma |
11.13 |
3 |
17873896 (1), 12798711 (1), 11501766 (1) |
| necrosis |
8.60 |
2 |
15713681 (2) |
| hyperplasia |
0.00 |
1 |
14744773 (1) |
| inflammation |
0.00 |
3 |
19036126 (1), 16521002 (1) |
About this table
Human Genome Epidemiology Navigator: TIMP4 (4 documents)
|
Medical News for TIMP4(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for TIMP4 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/106 PubMed articles for TIMP4 gene (see all 106
):- Cloning of the human tissue inhibitor of metalloproteinase-4 gene (TIMP4) and localization of the TIMP4 and Timp4 genes to human chromosome 3p25 and mouse chromosome 6, respectively. (PubMed id 9693046)1, 2, 3, 4 Olson T.M....Apte S.S. (1998)
- Molecular cloning and characterization of human tissue inhibitor of metalloproteinase 4. (PubMed id 8939999)1, 2, 3, 4 Greene J.... Shi Y.E. (1996)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Specific, high affinity binding of tissue inhibitor of metalloproteinases-4 (TIMP-4) to the COOH-terminal hemopexin-like domain of human gelatinase A. TIMP-4 binds progelatinase A and the COOH-terminal domain in a similar manner to TIMP-2. (PubMed id 9182583)1, 3 Bigg H.F....Overall C.M. (1997)
- Endometrial TIMP-4 mRNA is expressed in the stroma, while TIMP-4 protein accumulates in the epithelium and is released to the uterine fluid. (PubMed id 16809379)1, 3 Pilka R....Casslen B. (2006)
- Tissue inhibitor of metalloproteinases 4 (TIMP4) is involved in inflammatory processes of human cardiovascular pathology. (PubMed id 16521002)1, 3 Koskivirta I....Jarvelainen H. (2006)
- Identification, regulation and role of tissue inhibitor of metalloproteinases-4 (TIMP-4) in human platelets. (PubMed id 12466243)1, 3 Radomski A....Radomski M.W. (2002)
- Imbalance of tissue inhibitors of metalloproteinases (TIMP) - 1 and - 4 serum levels, in patients with inflammatory bowel disease. (PubMed id 19036126)1, 3 Kapsoritakis A.N....Potamianos S.P. (2008)
- E. coli expression of TIMP-4 and comparative kinetic studies with TIMP-1 and TIMP-2: insights into the interactions of TIMPs and matrix metalloproteinase 2 (gelatinase A). (PubMed id 12475252)1, 3 Troeberg L....Nagase H. (2002)
- Promoter Polymorphism (rs3755724, -55C/T) of Tissue Inhibitor of Metalloproteinase 4 (TIMP4) as a Risk Factor for Kawasaki Disease with Coronary Artery Lesions in a Korean Population. (PubMed id 19048177)1, 3 Ban J.Y....Chung J.H. (2008)
|
Search for TIMP4
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing TIMP4
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing TIMP4
(According to HUGE)
About This Section
| -- |
Specialized Databases showing TIMP4(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for TIMP4(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for TIMP4:

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Incremental update: 13 Oct 2009
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