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Aliases & Descriptions for TIMP2
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| CSC-21K 1, 2, 3 | | TIMP-2 3 |
| | | Descriptions |
|---|
| TIMP metallopeptidase inhibitor 2 2 | | Tissue inhibitor of metalloproteinases 2 2, 3 | | tissue inhibitor of metalloproteinase 2 1, 2 |
|
| | Search outside databases for aliases for TIMP2 genePrevious GC identifers: GC17M076623 GC17M080115 GC17M077310 GC17M077446 |
Summaries for TIMP2(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for TIMP2: This gene is a member of the TIMP gene family. The proteins encoded by this gene family are natural inhibitors of the matrix metalloproteinases, a group of peptidases involved in degradation of the extracellular matrix. In addition to an inhibitory role against metalloproteinases, the encoded protein has a unique role among TIMP family members in its ability to directly suppress the proliferation of endothelial cells. As a result, the encoded protein may be critical to the maintenance of tissue homeostasis by suppressing the proliferation of quiescent tissues in response to angiogenic factors, and by inhibiting protease activity in tissues undergoing remodelling of the extracellular matrix. [provided by RefSeq] UniProtKB/Swiss-Prot: TIMP2_HUMAN, P16035Function: Complexes with metalloproteinases (such as collagenases) and irreversibly inactivates them. Known to act on MMP-1, MMP-2, MMP-3, MMP-7, MMP-8, MMP-9, MMP-10, MMP-13, MMP-14, MMP-15, MMP-16 and MMP-19Gene Wiki entry for TIMP2 |
Genomic Location for TIMP2
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the TIMP2 gene 
Entrez Gene cytogenetic band: 17q25 Ensembl cytogenetic band: 17q25.3 HGNC cytogenetic band: 17q25TIMP2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 17 GeneLoc Exon Structure GeneLoc location for GC17M074363:
(about GC identifiers)
Start:
|
74,360,654 bp from pter |
End:
|
74,433,067 bp from pter |
Size:
|
72,414 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000017.9 NT_010641.15
| Proteins for TIMP2
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: TIMP2_HUMAN, P16035 (See
protein sequence)Recommended Name: Metalloproteinase inhibitor 2 precursor Size: 220 amino acids; 24399 Da
Subcellular location: Secreted
PDB structures from and Proteopedia :1BR9 (3D)
 1GXD (3D)
 2TMP (3D)
 
Secondary accessions: Q16121 Q93006 Q9UDF7Post-translational modifications:
The activity of TIMP2 is dependent on the presence of disulfide bonds1
REFSEQ proteins: NP_003246.1
ENSEMBL proteins: ENSP00000262768
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
3 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for TIMP2: Assays for TIMP2: | Protein
Domains/ Families for TIMP2(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P16035
ProtoNet protein and cluster: P16035 1 Blocks protein family: IPB001820 Tissue inhibitor of metalloproteinase
UniProtKB/Swiss-Prot: TIMP2_HUMAN, P16035Similarity: Belongs to the protease inhibitor I35 (TIMP) familySimilarity: Contains 1 NTR domain | Gene Function for TIMP2
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003255
Applied Biosystems Silencer® siRNAs for TIMP2
Sigma-Aldrich siRNA for TIMP2  Sigma-Aldrich shRNA Panels and shRNA for TIMP2  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_003255                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_003255                                  untagged cDNA clones in CMV expression vector (see all 2): AL713764 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_003255
UniProtKB/Swiss-Prot: TIMP2_HUMAN, P16035Function: Complexes with metalloproteinases (such as collagenases) and irreversibly inactivates them. Known to act on MMP-1, MMP-2, MMP-3, MMP-7, MMP-8, MMP-9, MMP-10, MMP-13, MMP-14, MMP-15, MMP-16 and MMP-19Genatlas biochemistry entry for TIMP2:matrix metalloproteinase,tissue inhibitor 2,with two alternatively spliced forms may be associated with SYN4,involved in the invasive phenotype of acute myelogenous leukemia6 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Timp2):
5 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for TIMP2
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
2 Sigma-Aldrich "Your Favorite Gene" Pathways for TIMP2 (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for TIMP2 
5/30 Interacting proteins for TIMP2 (P160351 ENSP000002627683) via UniProtKB, MINT, and/or STRING (see all 30
)About this table
4 Gene Ontology (GO) biological process terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0008285 | negative regulation of cell proliferation |
IEA | -- | | GO:0030814 | regulation of cAMP metabolic process |
IEA | -- | | GO:0043408 | regulation of MAPKKK cascade |
IEA | -- | | GO:0045664 | regulation of neuron differentiation |
IEA | -- | About this table
|
Drugs & Compounds for TIMP2(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for TIMP2 10/45 Novoseek chemical compound relationships for TIMP2 gene (see all 45
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| matrigel |
74.71 |
15 |
8740587 (2), 14606648 (2), 18474097 (1), 9462715 (1) (see all 9) |
| (4-aminophenyl)mercuric acetate |
66.44 |
2 |
1646720 (1), 7772054 (1) |
| norcantharidin |
54.05 |
8 |
16784656 (3), 16681930 (3) |
| methyl selenol |
45.96 |
2 |
16702316 (2) |
| hydroxamate |
40.85 |
14 |
8086430 (2), 9733724 (2), 12475252 (1), 11415441 (1) (see all 7) |
| ribonucleic acid |
31.77 |
1 |
9661630 (1) |
| 1,10-phenanthroline |
31.14 |
6 |
1655733 (1), 10551322 (1), 11415441 (1), 15095267 (1) (see all 5) |
| sorbinil |
25.99 |
1 |
9328936 (1) |
| 12-o-tetradecanoylphorbol 13-acetate |
24.98 |
1 |
1284126 (1) |
| beta-ionone |
22.69 |
5 |
14716815 (3), 16229269 (2) |
About this table
|
Transcripts for TIMP2(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003255
Sigma-Aldrich siRNA for TIMP2  Sigma-Aldrich shRNA Panels and shRNA for TIMP2  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_003255 REFSEQ mRNAs for TIMP2 gene: NM_003255.4
Applied Biosystems TaqMan ® Gene Expression Assays: NM_003255               OriGene GFP tagged cDNA clone in CMV expression vector: NM_003255                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_003255                                  untagged cDNA clones in CMV expression vector (see all 2): AL713764  Additional cDNA sequence: AK294290.1 AL110197.1 AL713764.1 BC010410.2 BC039613.1 BC040039.1 BC040445.1 BC052605.1 BC071586.1 BC111089.1 CR596527.1 CR612157.1 CR613160.1 CR616844.1 CR621263.1 J05593.1 M32304.1 S48568.1 X54533.1 24/26 DOTS entries (see all 26
): DT.100884685 DT.320454 DT.101958961 DT.100039281 DT.100039279 DT.91780826 DT.91964592 DT.120897367 DT.87011688 DT.95260462 DT.95351132 DT.100884682 DT.120897375 DT.91780931 DT.120897359 DT.95242885 DT.100884683 DT.100884688 DT.120897281 DT.91686177 DT.95260440 DT.102844632 DT.120897324 DT.120897333 24/869 AceView cDNA sequences (see all 869
):BX374543 AW071939 CA389182 BG542006 C01506 AI383725 BM721909 AI446177 BM705378 CA413513 AW261831 BM705526 AW874577 CD516597 AI766105 AA947693 AI338229 BE877280 BM997448 CF125784 BM142286 BF437567 T35759 AW005791
highest scoring ESTs for TIMP2:BQ877420 AL045993 BC052605 BC071586 BF726476 BG031482 BG897306 BQ675802 BQ679628 BQ889497 Unigene Cluster for TIMP2: TIMP metallopeptidase inhibitor 2 Hs.633514 [show with all ESTs]Unigene Representative Sequence: NM_003255
GeneLoc Exon Structure
5 Alternative Splicing Database (ASD) splice patterns (SP) for TIMP2
| ExUns: | 1 | ^ | 2 | ^ | 3a | · | 3b | · | 3c | ^ | 4 | ^ | 5a | · | 5b | ^ | 6a | · | 6b | ^ | 7a | · | 7b | · | 7c | · | 7d | |
| SP1: | |   | - |   | - |   | - |   | - |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |
| SP5: | |   | |   | - |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for TIMP2
1 Ensembl transcript including schematic representation: ENST00000262768
|
Expression for TIMP2
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| TIMP2 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for TIMP2
1 / 2 / 3 10 probe-sets matching TIMP2 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: TCTCTGATGC
SOURCE GeneReport for Unigene cluster: Hs.633514
Expression variation in blood from EXPOLDB for TIMP2 |
Orthologs for TIMP2
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for TIMP2 gene from 5/7 species (see all 7
)
About this table Species with no ortholog for TIMP2
ENSEMBL Gene Tree for TIMP2 | Paralogs for TIMP2(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for TIMP2 gene
- TIMP42 TIMP32 TIMP12
|
SNPs/Variants for TIMP2(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for TIMP2 (up to first 250kb)
|
Disorders & Mutations for TIMP2
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 188825
10/93 Novoseek disease relationships for TIMP2 gene (see all 93
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| metastasis |
71.24 |
157 |
15946567 (4), 16114547 (4), 10425288 (4), 15546163 (4) (see all 83) |
| tumors |
62.97 |
348 |
8674034 (6), 15546163 (6), 16784992 (5), 10366463 (5) (see all 99) |
| fibrosarcoma |
56.85 |
9 |
16214327 (2), 18495463 (1), 8112602 (1), 2380196 (1) (see all 8) |
| cancer |
52.04 |
72 |
9008095 (3), 9484825 (3), 11796838 (3), 11890687 (3) (see all 46) |
| conjunctivochalasis |
49.24 |
3 |
10670469 (2) |
| liver fibrosis |
47.77 |
19 |
9792032 (3), 11925608 (3), 14695775 (3), 18217401 (2) (see all 7) |
| pathological processes |
47.61 |
2 |
10985804 (1), 11004090 (1) |
| carcinoma |
42.59 |
64 |
15781321 (5), 12970394 (5), 15095267 (4), 8302724 (3) (see all 30) |
| carcinoma squamous cell |
41.76 |
20 |
12479097 (2), 10657012 (1), 16142392 (1), 18042068 (1) (see all 12) |
| aortic aneurysm abdominal |
41.60 |
1 |
10372551 (1) |
About this table
Human Gene Mutation Database: TIMP2 Genetic Association Database: TIMP2 Human Genome Epidemiology Navigator: TIMP2 (29 documents) Tumor Gene Database: TIMP2
|
Medical News for TIMP2(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for TIMP2 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/940 PubMed articles for TIMP2 gene (see all 940
):- Isolation and characterization of tissue inhibitors of metalloproteinases (TIMP-1 and TIMP-2) from human rheumatoid synovial fluid. (PubMed id 1730286)1, 3, 4 Osthues A.... Tschesche H. (1992)
- Tissue inhibitor of metalloproteinases-2 (TIMP-2) mRNA expression in tumor cell lines and human tumor tissues. (PubMed id 2380196)1, 3, 4 Stetler-Stevenson W.G.... Liotta L.A. (1990)
- The role of genetic polymorphisms in the promoters of the matrix metalloproteinase-2 and tissue inhibitor of metalloproteinase-2 genes in head and neck cancer. (PubMed id 16275157)1, 3, 6 O-Charoenrat P. and Khantapura P. (2006)
- Substantial reduction in risk of breast cancer associated with genetic polymorphisms in the promoters of the matrix metalloproteinase-2 and tissue inhibitor of metalloproteinase-2 genes. (PubMed id 14604886)1, 3, 6 Zhou Y....Lin D. (2004)
- Tissue inhibitor of metalloproteinases-1, -2, and -3 polymorphisms in a white population with intracranial aneurysms. (PubMed id 14605322)1, 3, 6 Krex D....Schackert G. (2003)
- Structure and characterization of the human tissue inhibitor of metalloproteinases-2 gene. (PubMed id 8810321)1, 3, 4 Hammani K.... Declerck Y.A. (1996)
- Characterization of the promoter of the gene encoding human tissue inhibitor of metalloproteinases-2 (TIMP-2). (PubMed id 8112602)1, 3, 4 de Clerck Y.A.... Rousseau G.G. (1994)
- Analysis of the MMP-9 (C-1562 T) and TIMP-2 (G-418C) gene promoter polymorphisms in patients with chronic periodontitis. (PubMed id 15691353)3, 6 de Souza A.P....Line S.R. (2005)
- Association analysis of tissue inhibitor of metalloproteinase2 gene polymorphisms with COPD in Egyptians. (PubMed id 15672858)3, 6 Hegab A.E....Sekizawa K. (2005)
- Genetic analysis of polymorphisms in biologically relevant candidate genes in patients with abdominal aortic aneurysms. (PubMed id 15944607)3, 6 Ogata T....Kuivaniemi H. (2005)
|
Search for TIMP2
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing TIMP2
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing TIMP2
(According to HUGE)
About This Section
| -- |
Specialized Databases showing TIMP2(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for TIMP2(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for TIMP2:

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Incremental update: 13 Oct 2009
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