TIMP1 Gene
protein-coding GIFtS : 65
GC0XP047326
TIMP metallopeptidase inhibitor 1 (Previous names: tissue inhibitor of metalloproteinase 1 (erythroid potentiating activity, collagenase inhibitor) )Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database (Previous symbols: TIMP, CLGI )
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Aliases & Descriptions for TIMP1
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases CLGI 2 , 3 EPA 2 , 3 , 5 EPO 1 , 2 FLJ90373 2 HCI 2 OTTHUMP00000023214 2 TIMP 2 , 3 , 5 TIMP-1 3
Descriptions Collagenase inhibitor 3 Erythroid-potentiating activity 3 Fibroblast collagenase inhibitor 2 , 3 TIMP metallopeptidase inhibitor 1 2 Tissue inhibitor of metalloproteinases 3 erythroid potentiating activity 2 tissue inhibitor of metalloproteinase 1 2 tissue inhibitor of metalloproteinase 1 (erythroid potentiating activity, collagenase inhibitor) 1
Search outside databases for aliases for TIMP1 genePrevious GC identifers: GC0XP046244 GC0XP045702 GC0XP046487 GC0XP046461 GC0XP047197
Summaries for TIMP1 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for TIMP1 : This gene belongs to the TIMP gene family. The proteins encoded by this gene family are naturalinhibitors of the matrix metalloproteinases (MMPs), a group of peptidases involved in degradationof the extracellular matrix. In addition to its inhibitory role against most of the known MMPs,the encoded protein is able to promote cell proliferation in a wide range of cell types, and mayalso have an anti-apoptotic function. Transcription of this gene is highly inducible in responseto many cytokines and hormones. In addition, the expression from some but not all inactive Xchromosomes suggests that this gene inactivation is polymorphic in human females. This gene islocated within intron 6 of the synapsin I gene and is transcribed in the opposite direction.[provided by RefSeq] UniProtKB/Swiss-Prot: TIMP1_HUMAN, P01033 Function : Complexes with metalloproteinases (such as collagenases) and irreversibly inactivatesthem. Also mediates erythropoiesis in vitro; but, unlike IL-3, it is species-specific, stimulatingthe growth and differentiation of only human and murine erythroid progenitors. Known to act onMMP-1, MMP-2, MMP-3, MMP-7, MMP-8, MMP-9, MMP-10, MMP-11, MMP-12, MMP-13 and MMP-16. Does not acton MMP-14
Gene Wiki entry for TIMP1
Genomic Location for TIMP1
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the TIMP1 gene Entrez Gene cytogenetic band: Xp11.3-p11.23 Ensembl cytogenetic band: Xp11.23 HGNC cytogenetic band: Xp11.3-p11.23 TIMP1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome X GeneLoc Exon Structure
GeneLoc location for GC0XP047326:
(about GC identifiers )
Start:
47,326,634 bp from pter
End:
47,331,134 bp from pter
Size:
4,501 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000023.9 NT_079573.3 Proteins for TIMP1
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: TIMP1_HUMAN, P01033 (See
protein sequence )Recommended Name: Metalloproteinase inhibitor 1 precursor Size : 207 amino acids; 23171 Da
Subcellular location : Secreted
PDB structures from and Proteopedia : 1D2B (3D)
 1LQN (3D)
 1OO9 (3D)
 1UEA (3D)
 2J0T (3D)
 
Secondary accessions : Q14252 Q9UCU1
Post-translational modifications:
The activity of TIMP1 is dependent on the presence of disulfide bonds1
REFSEQ proteins: NP_003245.1 ENSEMBL proteins: ENSP00000366216 ENSP00000366217 ENSP00000218388 ENSP00000366212 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 2 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for TIMP1: Assays for TIMP1:
Protein
Domains/ Families for TIMP1(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P01033 ProtoNet protein and cluster: P01033
1 Blocks protein family : IPB001820 Tissue inhibitor of metalloproteinase UniProtKB/Swiss-Prot: TIMP1_HUMAN, P01033 Similarity : Belongs to the protease inhibitor I35 (TIMP) familySimilarity : Contains 1 NTR domain
Gene Function for TIMP1
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003254 Applied Biosystems Silencer ® siRNAs for TIMP1 Sigma-Aldrich siRNA for TIMP1 Sigma-Aldrich shRNA Panels and shRNA for TIMP1 Explore Sigma-Aldrich super-pooled esiRNAs               OriGene GFP tagged cDNA clone in CMV expression vector: NM_003254                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_003254                                  untagged cDNA clone in CMV expression vector: NM_003254  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_003254 UniProtKB/Swiss-Prot: TIMP1_HUMAN, P01033 Function : Complexes with metalloproteinases (such as collagenases) and irreversibly inactivatesthem. Also mediates erythropoiesis in vitro; but, unlike IL-3, it is species-specific, stimulatingthe growth and differentiation of only human and murine erythroid progenitors. Known to act onMMP-1, MMP-2, MMP-3, MMP-7, MMP-8, MMP-9, MMP-10, MMP-11, MMP-12, MMP-13 and MMP-16. Does not acton MMP-14
Genatlas biochemistry entry for TIMP1 :matrix metalloproteinase,tissue inhibitor 1 (erythroid potentiating activity),involved in theregulation of bone modeling and remodeling in normal developing human bone,involved in theinvasive phenotype of acute myelogenous leukemia,demonstrating polymorphic X-chromosomeinactivation
10 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Timp1) :3 Gene Ontology (GO) molecular function terms (links to tree view) :
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Pathways & Interactions for TIMP1
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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3 Sigma-Aldrich "Your Favorite Gene" Pathways for TIMP1 (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for TIMP1 5/103 Interacting proteins for TIMP1 (P01033 2 ENSP00000218388 3 ) via UniProtKB, MINT, and/or STRING (see all 103
)About this table 3 Gene Ontology (GO) biological process terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0008284 positive regulation of cell proliferation
TAS 3839290 GO:0043249 erythrocyte maturation
IEA -- GO:0051045 negative regulation of membrane protein ectodomain proteolysis
IDA 12714508
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Drugs & Compounds for TIMP1 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for TIMP1 10/45 Novoseek chemical compound relationships for TIMP1 gene (see all 45
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
(4-aminophenyl)mercuric acetate
76.41
4
1379048 (1), 7890773 (1), 11409126 (1)
matrigel
69.37
21
8740587 (2), 7616276 (1), 17890452 (1), 18159069 (1) (see all 19 )
procollagen
55.65
25
7734146 (4), 15130753 (2), 16820347 (1), 18172937 (1) (see all 16 )
mcp 1
48.37
1
16023726 (1)
12-o-tetradecanoylphorbol 13-acetate
40.21
31
8913498 (5), 8268245 (2), 8476858 (2), 9665201 (2) (see all 14 )
ribonucleic acid
38.76
5
9589682 (2), 10022430 (1), 15774089 (1), 11408859 (1)
tgf beta1
36.85
8
11869079 (3), 9826041 (1), 16185342 (1), 16625447 (1) (see all 5 )
methyl selenol
34.91
2
16702316 (2)
phorbol
33.14
5
7772252 (1), 9054554 (1), 2176183 (1), 12525489 (1)
hydroxamate
32.96
7
8086430 (2), 12475252 (1), 11415441 (1), 14735194 (1) (see all 5 )
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Transcripts for TIMP1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003254 Sigma-Aldrich siRNA for TIMP1 Sigma-Aldrich shRNA Panels and shRNA for TIMP1 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_003254
REFSEQ mRNAs for TIMP1 gene: NM_003254.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_003254
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_003254                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_003254                                  untagged cDNA clone in CMV expression vector: NM_003254  
Additional cDNA sequence: AK074854.1 AK296116.1 AK307222.1 AK310206.1 AK311937.1 BC000866.1 BC007097.1 CR407638.1 CR541982.1 CR590572.1 CR593351.1 CR602090.1 M12670.1 M59906.1 S68252.1 X02598.1 X03124.1
23 DOTS entries : DT.450920 DT.91861097 DT.91769629 DT.100667068 DT.91769615 DT.97775338 DT.100667069 DT.95237267 DT.121285008 DT.87077883 DT.95372856 DT.100850763 DT.121285069 DT.100039515 DT.101985551 DT.100667071 DT.100768617 DT.85105205 DT.91829008 DT.92351923 DT.95372857 DT.95372866 DT.95372878
24/1070 AceView cDNA sequences (see all 1070
):BP871096 BQ957438 AA477010 BU164412 BM760866 AA365908 AI754597 AA302500 CF129285 CF129257 T61289 BU158915 BQ682343 H97196 S68252 BQ694229 BQ677637 BM699373 BQ227513 CR602090 BM672931 BU158956 BM994293 BF341062
highest scoring ESTs for TIMP1 :AA001324 AA032054 AA102515 AA135888 AA186788 AA256917 AA291209 AA291737 AA292460 AA292681
Unigene Cluster for TIMP1: TIMP metallopeptidase inhibitor 1 Hs.522632 [show with all ESTs ] Unigene Representative Sequence: BM913048 GeneLoc Exon Structure 4 Ensembl transcripts including schematic representations : ENST00000377017
ENST00000377018
ENST00000218388
ENST00000377013
Expression for TIMP1
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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TIMP1 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for TIMP1 1 / 2 / 3
3 probe-sets matching TIMP1 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: GAGAGTGTCTSOURCE GeneReport for Unigene cluster: Hs.522632 Expression variation in blood from EXPOLDB for TIMP1
Orthologs for TIMP1
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for TIMP1 gene from 5/8 species (see all 8
)
About this table Species with no ortholog for TIMP1 ENSEMBL Gene Tree for TIMP1 Paralogs for TIMP1 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for TIMP1 gene TIMP4 2 TIMP3 2 TIMP2 2
SNPs/Variants for TIMP1 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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Disorders & Mutations for TIMP1
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 305370 10/97 Novoseek disease relationships for TIMP1 gene (see all 97
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
liver fibrosis
71.72
104
11093731 (5), 11819791 (5), 17456311 (5), 12239944 (4) (see all 52 )
metastasis
63.44
227
12717827 (6), 12452001 (5), 11686557 (5), 10570415 (4) (see all 99 )
tumors
61.54
576
12672830 (6), 11335899 (6), 12704667 (5), 8532127 (5) (see all 99 )
osteoarthritis
55.85
22
8091128 (2), 8452582 (2), 10402070 (2), 7876539 (1) (see all 16 )
rheumatoid arthritis
55.35
34
8877931 (2), 7490368 (2), 8452582 (2), 17278779 (2) (see all 28 )
inflammation
54.23
99
7612046 (2), 18758412 (2), 9722227 (2), 17726014 (2) (see all 75 )
gingival overgrowth
51.22
2
18269661 (1), 12479630 (1)
necrosis
50.95
75
2167246 (2), 9731514 (2), 17904786 (2), 2175694 (2) (see all 71 )
pathological processes
47.73
7
9316744 (1), 17976016 (1), 9349574 (1), 14523226 (1) (see all 6 )
myocardial fibrosis
46.63
5
15638813 (1), 18260972 (1), 15364860 (1), 19254213 (1)
About this table Human Gene Mutation Database : TIMP1 Genetic Association Database: TIMP1 Human Genome Epidemiology Navigator: TIMP1 (19 documents) Tumor Gene Database : TIMP1
Medical News for TIMP1 (Possibly Related Articles in
Doctor's Guide )
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Publications for TIMP1 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/1670 PubMed articles for TIMP1 gene (see all 1670
): Genetic polymorphisms and cerebrospinal fluid levels of tissue inhibitor of metalloproteinases 1 in sporadic Alzheimer's disease. (PubMed id 12218659) 1, 3, 6 Wollmer M.A....Nitsch R.M. (2002) A novel tissue inhibitor of metalloproteinase-1 (TIMP-1) polymorphism associated with asthma in Australian women. (PubMed id 16061701) 1, 3, 6 Lose F....Kedda M.A. (2005) Isolation and characterization of tissue inhibitors of metalloproteinases (TIMP-1 and TIMP-2) from human rheumatoid synovial fluid. (PubMed id 1730286) 1, 3, 4 Osthues A.... Tschesche H. (1992) Genetic analysis of polymorphisms in biologically relevant candidate genes in patients with abdominal aortic aneurysms. (PubMed id 15944607) 1, 3, 6 Ogata T....Kuivaniemi H. (2005) Mechanism of inhibition of the human matrix metalloproteinase stromelysin-1 by TIMP-1. (PubMed id 9288970) 1, 3, 4 Gomis-Rueth F.-X.... Bode W. (1997) Elucidation of N-glycosylation sites on human platelet proteins: a glycoproteomic approach. (PubMed id 16263699) 3, 4 Lewandrowski U.... Sickmann A. (2006) Identification of N-linked glycoproteins in human saliva by glycoprotein capture and mass spectrometry. (PubMed id 16740002) 3, 4 Ramachandran P....Loo J.A. (2006) Human plasma N-glycoproteome analysis by immunoaffinity subtraction, hydrazide chemistry, and mass spectrometry. (PubMed id 16335952) 3, 4 Liu T.... Smith R.D. (2005) Signal peptide prediction based on analysis of experimentally verified cleavage sites. (PubMed id 15340161) 3, 4 Zhang Z. and Henzel W.J. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004)
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Genome Databases showing TIMP1
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing TIMP1
(According to HUGE )
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Specialized Databases showing TIMP1 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for TIMP1 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for TIMP1:
Search Tocris compounds for TIMP1
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009