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Aliases for TIMM29 Gene

Aliases for TIMM29 Gene

  • Translocase Of Inner Mitochondrial Membrane 29 2 3 5
  • C19orf52 3 4
  • TIM29 3 4
  • Mitochondrial Import Inner Membrane Translocase Subunit Tim29 3
  • Chromosome 19 Open Reading Frame 52 2
  • Uncharacterized Protein C19orf52 3

External Ids for TIMM29 Gene

Previous HGNC Symbols for TIMM29 Gene

  • C19orf52

Summaries for TIMM29 Gene

GeneCards Summary for TIMM29 Gene

TIMM29 (Translocase Of Inner Mitochondrial Membrane 29) is a Protein Coding gene.

UniProtKB/Swiss-Prot for TIMM29 Gene

  • Component of the TIM22 complex, a complex that mediates the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. The TIM22 complex forms a twin-pore translocase that uses the membrane potential as the external driving force. Required for the stability of the TIM22 complex and functions in the assembly of the TIMM22 protein into the TIM22 complex. May facilitate cooperation between TIM22 and TOM complexes by interacting with TOMM40.

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TIMM29 Gene

Genomics for TIMM29 Gene

Regulatory Elements for TIMM29 Gene

Enhancers for TIMM29 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19G010100 1.8 FANTOM5 ENCODE dbSUPER 30.5 -824.3 -824346 8.3 MLX CREB3L1 ZFP64 DMAP1 YBX1 YY1 SLC30A9 ZNF143 SP3 TBX21 ZNF699 ZNF561 FBXL12 LOC100419831 ZNF562 ZNF559 TIMM29 EIF3G RAVER1 ZNF846
GH19G010379 1.1 ENCODE 48.2 -548.2 -548207 1.9 HDGF PKNOX1 CREB3L1 AGO1 WRNIP1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 FBXL12 ZNF561 TIMM29 RAVER1 EIF3G LOC100419831 ZNF562 ZNF846 CDC37 ZNF121
GH19G010808 1.9 FANTOM5 Ensembl ENCODE dbSUPER 25.3 -114.2 -114245 11.6 HDGF PKNOX1 CREB3L1 AGO1 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 EIF3G TIMM29 FBXL12 CARM1 RAVER1 C19orf38 CDC37 YIPF2 ZNF440 ZNF627
GH19G011150 1.7 Ensembl ENCODE dbSUPER 22.5 +225.1 225090 6.3 CREB3L1 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC ZNF700 TIMM29 ZNF440 RAVER1 ZNF878 ZNF441 ZNF627 PRKCSH SPC24 ZNF844
GH19G010267 1.4 ENCODE dbSUPER 22.2 -658.4 -658396 5.6 MLX CREB3L1 AGO1 ZFP64 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 ZNF263 ZNF699 FBXL12 LOC100419831 ZNF559 ZNF561 ZNF846 RAVER1 ZNF562 TIMM29 EIF3G
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TIMM29 on UCSC Golden Path with GeneCards custom track

Promoters for TIMM29 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000107110 67 1601 PKNOX1 CREB3L1 AGO1 WRNIP1 SIN3A DMAP1 ZNF2 ZBTB7B YY1 ZNF207

Genomic Location for TIMM29 Gene

Chromosome:
19
Start:
10,928,733 bp from pter
End:
10,933,535 bp from pter
Size:
4,803 bases
Orientation:
Plus strand

Genomic View for TIMM29 Gene

Genes around TIMM29 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TIMM29 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TIMM29 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TIMM29 Gene

Proteins for TIMM29 Gene

  • Protein details for TIMM29 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BSF4-TIM29_HUMAN
    Recommended name:
    Mitochondrial import inner membrane translocase subunit Tim29
    Protein Accession:
    Q9BSF4
    Secondary Accessions:
    • Q96EY6
    • Q96IT8

    Protein attributes for TIMM29 Gene

    Size:
    260 amino acids
    Molecular mass:
    29233 Da
    Quaternary structure:
    • Component of the TIM22 complex, whose core is composed of TIMM22, associated with TIMM10B, TIMM9, TIMM10 and TIMM29 (PubMed:27554484, PubMed:27718247). Interacts directly with TIMM10B (PubMed:27554484). Interacts with TOMM40; linking the TIM22 complex to the TOM complex (PubMed:27554484). Interacts directly with oxidized TIMM22 (PubMed:27718247).

neXtProt entry for TIMM29 Gene

Post-translational modifications for TIMM29 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for TIMM29 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for TIMM29 Gene

Domains & Families for TIMM29 Gene

Gene Families for TIMM29 Gene

Protein Domains for TIMM29 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TIMM29: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TIMM29 Gene

Function for TIMM29 Gene

Molecular function for TIMM29 Gene

UniProtKB/Swiss-Prot Function:
Component of the TIM22 complex, a complex that mediates the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. The TIM22 complex forms a twin-pore translocase that uses the membrane potential as the external driving force. Required for the stability of the TIM22 complex and functions in the assembly of the TIMM22 protein into the TIM22 complex. May facilitate cooperation between TIM22 and TOM complexes by interacting with TOMM40.

Gene Ontology (GO) - Molecular Function for TIMM29 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 27554484
genes like me logo Genes that share ontologies with TIMM29: view

Phenotypes for TIMM29 Gene

GenomeRNAi human phenotypes for TIMM29:
genes like me logo Genes that share phenotypes with TIMM29: view

Animal Model Products

miRNA for TIMM29 Gene

miRTarBase miRNAs that target TIMM29

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for TIMM29 Gene

Localization for TIMM29 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TIMM29 Gene

Mitochondrion inner membrane; Single-pass membrane protein; Intermembrane side.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for TIMM29 gene
Compartment Confidence
mitochondrion 5
nucleus 2
plasma membrane 1
peroxisome 1
cytosol 1

Gene Ontology (GO) - Cellular Components for TIMM29 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005739 mitochondrion IEA --
GO:0005743 mitochondrial inner membrane IDA,IEA 27554484
GO:0005758 mitochondrial intermembrane space IDA 27554484
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with TIMM29: view

Pathways & Interactions for TIMM29 Gene

SuperPathways for TIMM29 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TIMM29 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006810 transport IEA --
GO:0015031 protein transport IEA --
genes like me logo Genes that share ontologies with TIMM29: view

No data available for Pathways by source and SIGNOR curated interactions for TIMM29 Gene

Transcripts for TIMM29 Gene

mRNA/cDNA for TIMM29 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for TIMM29 Gene

No ASD Table

Relevant External Links for TIMM29 Gene

GeneLoc Exon Structure for
TIMM29
ECgene alternative splicing isoforms for
TIMM29

Expression for TIMM29 Gene

NURSA nuclear receptor signaling pathways regulating expression of TIMM29 Gene:

TIMM29

Evidence on tissue expression from TISSUES for TIMM29 Gene

  • Lung(4.2)
No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for TIMM29 Gene

Orthologs for TIMM29 Gene

This gene was present in the common ancestor of animals.

Orthologs for TIMM29 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C19H19orf52 34
  • 99.36 (n)
C19orf52 35
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C20H19orf52 34
  • 86.41 (n)
C19orf52 35
  • 84 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C7H19orf52 34 35
  • 85.26 (n)
mouse
(Mus musculus)
Mammalia 1810026J23Rik 34 35
  • 79.36 (n)
Timm29 16
rat
(Rattus norvegicus)
Mammalia RGD1309188 34
  • 78.85 (n)
oppossum
(Monodelphis domestica)
Mammalia C19orf52 35
  • 65 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia C19orf52 35
  • 54 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia c19orf52 34
  • 59.74 (n)
zebrafish
(Danio rerio)
Actinopterygii zgc:110046 34
  • 52.38 (n)
C3H19orf52 35
  • 42 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP001454 34
  • 48.31 (n)
fruit fly
(Drosophila melanogaster)
Insecta CG14270 34 35
  • 46.85 (n)
worm
(Caenorhabditis elegans)
Secernentea R04F11.5 35
  • 26 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 33 (a)
OneToOne
Species where no ortholog for TIMM29 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for TIMM29 Gene

ENSEMBL:
Gene Tree for TIMM29 (if available)
TreeFam:
Gene Tree for TIMM29 (if available)

Paralogs for TIMM29 Gene

No data available for Paralogs for TIMM29 Gene

Variants for TIMM29 Gene

Sequence variations from dbSNP and Humsavar for TIMM29 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000293261 -- 10,930,246(+) ATGTT(G/T)TTATT intron-variant, upstream-variant-2KB
rs1000622819 -- 10,928,856(+) GGTCC(C/T)GGCGC upstream-variant-2KB, reference, missense, utr-variant-5-prime
rs1000717211 -- 10,928,704(+) TATCC(-/T)CTCCC upstream-variant-2KB, utr-variant-5-prime
rs1000793182 -- 10,927,346(+) GGAAC(A/G/T)TATAC intron-variant, upstream-variant-2KB
rs1000855799 -- 10,928,782(+) TATCA(C/G)GAGTT upstream-variant-2KB, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for TIMM29 Gene

Variant ID Type Subtype PubMed ID
nsv833749 CNV loss 17160897

Variation tolerance for TIMM29 Gene

Gene Damage Index Score: 0.91; 18.99% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TIMM29 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TIMM29

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TIMM29 Gene

Disorders for TIMM29 Gene

Relevant External Links for TIMM29

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TIMM29
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TIMM29

No disorders were found for TIMM29 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TIMM29 Gene

Publications for TIMM29 Gene

  1. Tim29 is a novel subunit of the human TIM22 translocase and is involved in complex assembly and stability. (PMID: 27554484) Kang Y. … Stojanovski D. (Elife 2016) 2 3 4 64
  2. TIM29 is a subunit of the human carrier translocase required for protein transport. (PMID: 27718247) Callegari S. … Rehling P. (FEBS Lett. 2016) 3 4 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  4. Mitochondrial Protein Interaction Mapping Identifies Regulators of Respiratory Chain Function. (PMID: 27499296) Floyd B.J. … Pagliarini D.J. (Mol. Cell 2016) 3 64
  5. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3 64

Products for TIMM29 Gene

Sources for TIMM29 Gene

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