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Aliases for TIGD2 Gene

Aliases for TIGD2 Gene

  • Tigger Transposable Element Derived 2 2 3
  • Epididymis Luminal Protein 106 3
  • HEL106 3

External Ids for TIGD2 Gene

Previous GeneCards Identifiers for TIGD2 Gene

  • GC04U990144
  • GC04P090335
  • GC04P090492
  • GC04P090391
  • GC04P090252
  • GC04P090033
  • GC04P085785

Summaries for TIGD2 Gene

Entrez Gene Summary for TIGD2 Gene

  • The protein encoded by this gene belongs to the tigger subfamily of the pogo superfamily of DNA-mediated transposons in humans. These proteins are related to DNA transposons found in fungi and nematodes, and more distantly to the Tc1 and mariner transposases. They are also very similar to the major mammalian centromere protein B. The exact function of this gene is not known. [provided by RefSeq, Jul 2008]

GeneCards Summary for TIGD2 Gene

TIGD2 (Tigger Transposable Element Derived 2) is a Protein Coding gene. GO annotations related to this gene include nucleic acid binding. An important paralog of this gene is TIGD5.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TIGD2 Gene

Genomics for TIGD2 Gene

Regulatory Elements for TIGD2 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for TIGD2 Gene

Chromosome:
4
Start:
89,111,500 bp from pter
End:
89,114,901 bp from pter
Size:
3,402 bases
Orientation:
Plus strand

Genomic View for TIGD2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TIGD2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TIGD2 Gene

Proteins for TIGD2 Gene

  • Protein details for TIGD2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q4W5G0-TIGD2_HUMAN
    Recommended name:
    Tigger transposable element-derived protein 2
    Protein Accession:
    Q4W5G0

    Protein attributes for TIGD2 Gene

    Size:
    525 amino acids
    Molecular mass:
    59623 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TIGD2 Gene

Proteomics data for TIGD2 Gene at MOPED

Post-translational modifications for TIGD2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for TIGD2 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for TIGD2 Gene

Domains & Families for TIGD2 Gene

Gene Families for TIGD2 Gene

Suggested Antigen Peptide Sequences for TIGD2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q4W5G0

UniProtKB/Swiss-Prot:

TIGD2_HUMAN :
  • Contains 1 DDE domain.
  • Belongs to the tigger transposable element derived protein family.
Domain:
  • Contains 1 DDE domain.
  • Contains 1 HTH CENPB-type DNA-binding domain.
  • Contains 1 HTH psq-type DNA-binding domain.
Family:
  • Belongs to the tigger transposable element derived protein family.
genes like me logo Genes that share domains with TIGD2: view

Function for TIGD2 Gene

Gene Ontology (GO) - Molecular Function for TIGD2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding --
GO:0003677 DNA binding IEA --
genes like me logo Genes that share ontologies with TIGD2: view

Phenotypes for TIGD2 Gene

genes like me logo Genes that share phenotypes with TIGD2: view

Animal Model Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for TIGD2

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targets and HOMER Transcription for TIGD2 Gene

Localization for TIGD2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TIGD2 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TIGD2 Gene COMPARTMENTS Subcellular localization image for TIGD2 gene
Compartment Confidence
nucleus 3

Gene Ontology (GO) - Cellular Components for TIGD2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with TIGD2: view

Pathways & Interactions for TIGD2 Gene

SuperPathways for TIGD2 Gene

No Data Available

Interacting Proteins for TIGD2 Gene

Gene Ontology (GO) - Biological Process for TIGD2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TIGD2 Gene

Drugs & Compounds for TIGD2 Gene

No Compound Related Data Available

Transcripts for TIGD2 Gene

mRNA/cDNA for TIGD2 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(27) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TIGD2 Gene

Tigger transposable element derived 2:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for TIGD2

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TIGD2 Gene

No ASD Table

Relevant External Links for TIGD2 Gene

GeneLoc Exon Structure for
TIGD2
ECgene alternative splicing isoforms for
TIGD2

Expression for TIGD2 Gene

mRNA expression in normal human tissues for TIGD2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for TIGD2 Gene

This gene is overexpressed in Liver (x6.7).

Protein differential expression in normal tissues from HIPED for TIGD2 Gene

This gene is overexpressed in Frontal cortex (37.5) and NK cells (14.8).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for TIGD2 Gene



SOURCE GeneReport for Unigene cluster for TIGD2 Gene Hs.58924

genes like me logo Genes that share expression patterns with TIGD2: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for TIGD2 Gene

Orthologs for TIGD2 Gene

This gene was present in the common ancestor of animals.

Orthologs for TIGD2 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia TIGD2 35
  • 92.57 (n)
  • 94.29 (a)
TIGD2 36
  • 94 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TIGD2 35
  • 93.14 (n)
  • 94.67 (a)
TIGD2 36
  • 95 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Tigd2 35
  • 86.77 (n)
  • 88.36 (a)
Tigd2 16
Tigd2 36
  • 88 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia LOC100912924 35
  • 86.7 (n)
  • 87.6 (a)
oppossum
(Monodelphis domestica)
Mammalia TIGD2 36
  • 82 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 61 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 43 (a)
ManyToMany
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP003894 35
  • 48.22 (n)
  • 38.67 (a)
Species with no ortholog for TIGD2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TIGD2 Gene

ENSEMBL:
Gene Tree for TIGD2 (if available)
TreeFam:
Gene Tree for TIGD2 (if available)

Paralogs for TIGD2 Gene

Paralogs for TIGD2 Gene

(5) SIMAP similar genes for TIGD2 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with TIGD2: view

Variants for TIGD2 Gene

Sequence variations from dbSNP and Humsavar for TIGD2 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type MAF
VAR_053036 -

Structural Variations from Database of Genomic Variants (DGV) for TIGD2 Gene

Variant ID Type Subtype PubMed ID
nsv461576 CNV Gain 19166990
nsv470051 CNV Gain 18288195

Variation tolerance for TIGD2 Gene

Residual Variation Intolerance Score: 14.26% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 6.34; 76.75% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TIGD2 Gene

HapMap Linkage Disequilibrium report
TIGD2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TIGD2 Gene

Disorders for TIGD2 Gene

Relevant External Links for TIGD2

Genetic Association Database (GAD)
TIGD2
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TIGD2
genes like me logo Genes that share disorders with TIGD2: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TIGD2 Gene

Publications for TIGD2 Gene

  1. Identification of intrahepatic cholangiocarcinoma related genes by comparison with normal liver tissues using expressed sequence tags. (PMID: 16712791) Wang A.G. … Kim N.S. (Biochem. Biophys. Res. Commun. 2006) 67
  2. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PMID: 15815621) Hillier L.W. … Wilson R.K. (Nature 2005) 67
  3. Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. (PMID: 15342556) Suzuki Y. … Sugano S. (Genome Res. 2004) 67
  4. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 67
  5. Tiggers and DNA transposon fossils in the human genome. (PMID: 8643651) Smit A.F. … Riggs A.D. (Proc. Natl. Acad. Sci. U.S.A. 1996) 67

Products for TIGD2 Gene

Sources for TIGD2 Gene

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