TIFA Gene
protein-coding GIFtS : 52
GCID: GC04 M113196
TRAF-interacting protein with forkhead-associated domain
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Aliasesfor TIFA gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases TRAF-Interacting Protein With Forkhead-Associated Domain 1 2 TRAF2-Binding Protein2 3 T2BP1 2 3 MGC207911 T6BP1 2 TRAF-Interacting Protein With A Forkhead-Associated Domain2 TIFAA1 2 TRAF-Interacting Protein With FHA Domain-Containing Protein A2 Putative MAPK-Activating Protein PM142 3 TRAF2 Binding Protein2 Putative NF-Kappa-B-Activating Protein 202 3 TRAF6 Binding Protein2
Export aliases for TIFA gene to outside databases Previous GC identifers: GC04M113555 GC04M113416 GC04M108928
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Summariesfor TIFA gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section UniProtKB/Swiss-Prot: TIFA_HUMAN, Q96CG3 Function : Adapter protein which mediates the IRAK1 and TRAF6 interaction following IL-1 stimulation, resulting in thedownstream activation of NF-kappa-B and AP-1 pathways. Induces the oligomerization and polyubiquitination of TRAF6, which leads to the activation of TAK1 and IKK through a proteasome-independent mechanism
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Genomic Viewsfor TIFA gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000004.11 NC_018915.1 NT_016354.19 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the TIFA gene promoter: AP-2rep HOXA3 FOXO3 Cdc5 Ik-3 FOXO3b SRY STAT3 IRF-7A FOXO3a Other transcription factors Search SABiosciences Chromatin IP Primers for TIFA Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat TIFA
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 4q25 Ensembl cytogenetic band: 4q25 HGNC cytogenetic band: 4q25 TIFA Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 4 GeneLoc Exon Structure
GeneLoc location for GC04M113196: view genomic region
(about GC identifiers )
Start:
113,196,782 bp from pter
End:
113,207,059 bp from pter
Size:
10,278 bases
Orientation:
minus strand
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Proteinsfor TIFA gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: TIFA_HUMAN, Q96CG3 (See
protein sequence )Recommended Name: TRAF-interacting protein with FHA domain-containing protein A Size : 184 amino acids; 21445 Da
Subunit : Homotrimer. Interacts with IRAK1, TIFAB, ZCCHC11, TRAF2 and TRAF6. Binding to TIFAB inhibits TRAF6 activationpossibly by inducing a conformational change in TIFA. Binding to ZCCHC11 suppresses the TRAF6-dependent activation of NF-kappa-B Explore the universe of human proteins at neXtProt for TIFA: NX_Q96CG3 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q96CG3 TIFA Protein expression data from MOPED and PaxDb : About this image REFSEQ proteins: NP_443096.1 ENSEMBL proteins: ENSP00000354911 ENSP00000424231 Human Recombinant Protein Products for TIFA: TIFA Antibody Products: Assay Products for TIFA:
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Protein
Domains / Familiesfor TIFA gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
TIFA for domains About GeneDecksing 1 InterPro domain/family :
Graphical View of Domain Structure for InterPro Entry Q96CG3 ProtoNet protein and cluster: Q96CG3
1 Blocks protein family : IPB000253 Forkhead-associated (FHA) UniProtKB/Swiss-Prot: TIFA_HUMAN, Q96CG3 Similarity : Contains 1 FHA domain
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Functionfor TIFA gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory ,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase ,
shRNA from
OriGene ,
Sirion Biotech ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Sirion Biotech ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
Sirion Biotech ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Molecular Function: UniProtKB/Swiss-Prot Summary: TIFA_HUMAN, Q96CG3 Function : Adapter protein which mediates the IRAK1 and TRAF6 interaction following IL-1 stimulation, resulting in thedownstream activation of NF-kappa-B and AP-1 pathways. Induces the oligomerization and polyubiquitination of TRAF6, which leads to the activation of TAK1 and IKK through a proteasome-independent mechanism
Gene Ontology (GO): 1 molecular function term (GO ID links to tree view) : About this table
TIFA for ontologies About GeneDecksing Phenotypes: 2 GenomeRNAi human phenotypes for TIFA :Animal Models: Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for TIFA (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for TIFAOriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: TIFA (NM_052864 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for TIFA Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat TIFA
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TIFA
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Pathways & Interactionsfor TIFA gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Unified GeneCards pathways   About this table See pathways by source Super-pathway contained gene-specific pathways 1 TNF-alpha/NF-kB Signaling Pathway
1 BioSystems Pathway for TIFA Interactions: SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for TIFA STRING Interaction
Network Preview (showing 5 interactants - click image to see 16)5/22 Interacting proteins for TIFA (Q96CG3 1 , 2 , 3 ENSP00000354911 4 ) via UniProtKB, MINT, STRING , and/or I2D (see all 22 )Interactant Interaction Details GeneCard External ID(s) LNX1 Q8TBB1 2 , 3 , ENSP00000263925 4 MINT-67122 I2D:
score=5 STRING: ENSP00000263925 SDCBP2 Q9H190 2 , 3 , ENSP00000342935 4 MINT-66594 I2D:
score=5 STRING: ENSP00000342935 TRAF2 Q12933 2 , 3 , ENSP00000247668 4 MINT-50381 MINT-50380 I2D:
score=6 STRING: ENSP00000247668 NIF3L1 Q9GZT8 2 , 3 , ENSP00000386394 4 MINT-66957 I2D:
score=5 STRING: ENSP00000386394 NUDT18 Q6ZVK8 2 , 3 , ENSP00000307852 4 MINT-66371 I2D:
score=5 STRING: ENSP00000307852
About this table Gene Ontology (GO): 1 biological process term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0007249 I-kappaB kinase/NF-kappaB cascade
IEA --
TIFA for ontologies About GeneDecksing
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Drugs & Compoundsfor TIFA gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for TIFA Search CenterWatch for drugs/clinical trials and news about TIFA
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Transcriptsfor TIFA gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
Sirion Biotech ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for TIFA gene: NM_052864.2 Unigene Cluster for TIFA:
TRAF-interacting protein with forkhead-associated domain Hs.310640 [show with all ESTs ] Unigene Representative Sequence: NM_052864 2 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000361717 (uc003ial.3 ) ENST00000500655 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for TIFA (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for TIFAOriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: TIFA (NM_052864 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for TIFA Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat TIFA
Additional cDNA sequence: AB062110.1 AB097011.1 AB097038.1 AK292900.1 BC008294.1 BC014259.2
2 DOTS entries : DT.454574 DT.95269001
24/125 AceView cDNA sequences (see all 125 ):
AA830457 AA805515 BQ011608 CR599623 AI337865 BU687073 BX089515 AI915509 BM718895 CA772080 CR623539 AB097038 BM680758 Z35722 AA769537 BX100167 AI188439 AI147211 BU625851 AA814954 AB097011 BG236358 BM680110 BF002808 GeneLoc Exon Structure
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Expression for TIFA gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section TIFA expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: TACATAATAAAbout this image TIFA expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table
See TIFA Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for TIFA SOURCE GeneReport for Unigene cluster: Hs.310640 SABiosciences Custom PCR Arrays for TIFA Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for TIFABrowse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat TIFA QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat TIFA QIAGEN QuantiFast Probe-based Assays in human , mouse , rat TIFA In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TIFA
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Orthologsfor TIFA gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of chordates.
Orthologs for TIFA gene from 4/10 species (see all 10 ) About this table
ENSEMBL Gene Tree for TIFA (if available)TreeFam Gene Tree for TIFA (if available)
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Paralogsfor TIFA gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section --
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Genomic Variantsfor TIFA gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 4 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for TIFA (113196782 - 113207059 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for TIFA: --
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing TIFA
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Disorders
/ Diseasesfor TIFA gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
TIFA for disorders About GeneDecksing
OMIM gene information: 609028
OMIM disorders : --2 diseases for TIFA : About MalaCards alcohol dependence alcoholism Human Genome Epidemiology (HuGE) Navigator: TIFA (10 documents) Export disorders for TIFA gene to outside databases
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Publicationsfor TIFA gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for TIFA gene, integrated from 9 sources (see all 22 ): (articles sorted by number of sources associating them with TIFA) Utopia : connect your pdf to the dynamic world of online information
TIFA activates IkappaB kinase (IKK) by promoting oligomerization and ubiquitination of TRAF6. (PubMed id 15492226) 1 , 2 , 9 Ea C.-K.... Chen Z.J. (2004) A novel Zinc finger protein, ZCCHC11, interacts with TIFA and modulates TLR signaling. (PubMed id 16643855) 1 , 2 Minoda Y.... Yoshimura A. (2006) TIFAB inhibits TIFA, TRAF-interacting protein with a forkhead- associated domain. (PubMed id 15047173) 1 , 2 Matsumura T....Inoue J. (2004) Large-scale identification and characterization of human genes that activate NF-kappaB and MAPK signaling pathways. (PubMed id 12761501) 1 , 2 Matsuda A....Sugano S. (2003) Identification of TIFA as an adapter protein that links tumor necrosis factor receptor-associated factor 6 (TRAF6) to interleukin-1 (IL-1) receptor-associated kinase-1 (IRAK-1) in IL-1 receptor signaling. (PubMed id 12566447) 1 , 2 Takatsuna H.... Inoue J. (2003) Plastic surgical rehabilitation of the prison patient. (PubMed id 1179819) 1 , 3 Fisher J.C. and Edgerton M.P. (1975) Intermolecular binding between TIFA-FHA and TIFA-pT me diates tumor necrosis factor alpha stimulation and NF-kB activation. (PubMed id 22566686) 1 Huang C.C....Tsai M.D. (2012) Methods for quantification of in vivo changes in prote in ubiquitination following proteasome and deubiquitinase inhibition. (PubMed id 22505724) 1 Udeshi N.D....Carr S.A. (2012) Initial characterization of the human central proteome. (PubMed id 21269460) 2 Burkard T.R.... Colinge J. (2011) A proteome-wide, quantitative survey of in vivo ubiqui tylation sites reveals widespread regulatory roles. (PubMed id 21890473) 1 Wagner S.A....Choudhary C. (2011)
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External Searches for TIFA gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing TIFA gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing TIFA gene
(According to HUGE )
About This Section --
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Specialized Databases showing TIFA gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for TIFA Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for TIFA gene: Search GeneIP for patents involving TIFA GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor TIFA gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 and Sirion Biotech , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript , LifeMap BioReagents , and Sirion Biotech , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences , In Situ Hybridization Assays from Advanced Cell Diagnostics , Animal models from inGenious Targeting Laboratory )About This Section
Browse OriGene Antibodies OriGene shRNA RFP for TIFA OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for TIFA OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for TIFA OriGene Protein Over-expression Lysate for TIFA Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for TIFA OriGene 3'-UTR Clone for TIFA OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for TIFA OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for TIFA Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for TIFA OriGene Custom Protein Services for TIFA OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat TIFA QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing TIFA QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat TIFA QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat TIFA QIAGEN QuantiFast Probe-based Assays in human , mouse , rat TIFA QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat TIFA
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Recombinant Protein for TIFA
TIFA Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TIFA
ThermoFisher Antibodies for TIFA
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat TIFA
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Aliases for TIFA
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Disorders / Diseases for TIFA
Domains / Families for TIFA
Drugs / Compounds for TIFA
Expression for TIFA
Function for TIFA
Genomic Views for TIFA
Intellectual Property for TIFA
Orthologs for TIFA
Paralogs for TIFA
Pathways / Interactions for TIFA
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Proteins for TIFA
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Summaries for TIFA
Transcripts for TIFA
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