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Aliases for THUMPD3-AS1 Gene

Subcategory (RNA class) for THUMPD3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for THUMPD3-AS1 Gene

  • THUMPD3 Antisense RNA 1 2 3 5
  • SETD5 Antisense RNA 1 2 3
  • SETD5-AS1 3

External Ids for THUMPD3-AS1 Gene

Previous HGNC Symbols for THUMPD3-AS1 Gene

  • SETD5-AS1

Previous GeneCards Identifiers for THUMPD3-AS1 Gene

  • GC03M009394

Summaries for THUMPD3-AS1 Gene

GeneCards Summary for THUMPD3-AS1 Gene

THUMPD3-AS1 (THUMPD3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for THUMPD3-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for THUMPD3-AS1 Gene

Genomics for THUMPD3-AS1 Gene

GeneHancer (GH) Regulatory Elements for THUMPD3-AS1 Gene

Promoters and enhancers for THUMPD3-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I009394 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 577.6 -0.4 -412 9.8 CLOCK MLX FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SETD5 THUMPD3-AS1 GC03P009403 BRPF1 RAD18 GHRLOS TTLL3 FANCD2 JAGN1 SEC13
GH03I009730 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 35 -333.5 -333455 3 CLOCK FEZF1 DMAP1 YY1 ZNF213 E2F8 ZNF416 ZNF143 SP3 NFYC BRPF1 SETD5 CYCSP10 THUMPD3-AS1 ENSG00000269886 RAD18 EMC3-AS1 ENSG00000269894 FANCD2 ENSG00000269982
GH03I009362 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 30.5 +35.4 35377 2.2 MLX FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 NFYC SRGAP3 THUMPD3 ENSG00000254485 GC03M009360 THUMPD3-AS1 RAD18 BRPF1 SETD5 TTLL3 FANCD2
GH03I009141 Enhancer 0.9 ENCODE 36.2 +256.8 256781 1.2 PKNOX1 ZSCAN4 INSM2 MZF1 FEZF1 ZNF2 ZNF213 ZNF366 ZSCAN5C ZNF391 CYCSP10 THUMPD3-AS1 SETD5 RAD18 ENSG00000269894 THUMPD3 GC03P009098 SRGAP3-AS2 SRGAP3
GH03I009975 Enhancer 1.5 Ensembl ENCODE dbSUPER 19.5 -579.6 -579634 4.8 HDGF PKNOX1 CLOCK FOXA2 ARNT ARID4B SIN3A ZNF2 YY1 ZNF766 PIR57234 FANCD2 TTLL3 BRPF1 THUMPD3-AS1 BRK1 SETD5 PRRT3 CIDECP ENSG00000269894
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around THUMPD3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for THUMPD3-AS1 Gene

Genomic Locations for THUMPD3-AS1 Gene
chr3:9,349,689-9,398,579
(GRCh38/hg38)
Size:
48,891 bases
Orientation:
Minus strand
chr3:9,391,373-9,440,263
(GRCh37/hg19)

Genomic View for THUMPD3-AS1 Gene

Genes around THUMPD3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
THUMPD3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for THUMPD3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for THUMPD3-AS1 Gene

Proteins for THUMPD3-AS1 Gene

Post-translational modifications for THUMPD3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for THUMPD3-AS1 Gene

Domains & Families for THUMPD3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for THUMPD3-AS1 Gene

Function for THUMPD3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for THUMPD3-AS1 Gene

Localization for THUMPD3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for THUMPD3-AS1 Gene

Pathways & Interactions for THUMPD3-AS1 Gene

SuperPathways for THUMPD3-AS1 Gene

No Data Available

Interacting Proteins for THUMPD3-AS1 Gene

Gene Ontology (GO) - Biological Process for THUMPD3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for THUMPD3-AS1 Gene

Drugs & Compounds for THUMPD3-AS1 Gene

No Compound Related Data Available

Transcripts for THUMPD3-AS1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for THUMPD3-AS1 Gene

No ASD Table

Relevant External Links for THUMPD3-AS1 Gene

GeneLoc Exon Structure for
THUMPD3-AS1
ECgene alternative splicing isoforms for
THUMPD3-AS1

Expression for THUMPD3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for THUMPD3-AS1 Gene

genes like me logo Genes that share expression patterns with THUMPD3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for THUMPD3-AS1 Gene

Orthologs for THUMPD3-AS1 Gene

Evolution for THUMPD3-AS1 Gene

ENSEMBL:
Gene Tree for THUMPD3-AS1 (if available)
TreeFam:
Gene Tree for THUMPD3-AS1 (if available)

No data available for Orthologs for THUMPD3-AS1 Gene

Paralogs for THUMPD3-AS1 Gene

No data available for Paralogs for THUMPD3-AS1 Gene

Variants for THUMPD3-AS1 Gene

Sequence variations from dbSNP and Humsavar for THUMPD3-AS1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000037942 -- 9,398,907(-) G/A upstream_transcript_variant
rs1000049702 -- 9,395,167(-) AAAAAAAA/AAAAAAAAA intron_variant
rs1000140439 -- 9,392,559(-) G/A intron_variant
rs1000209959 -- 9,392,582(-) T/C intron_variant
rs1000225565 -- 9,396,483(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for THUMPD3-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv277n21 CNV loss 19592680
nsv821981 CNV loss 20364138

Additional Variant Information for THUMPD3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
THUMPD3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for THUMPD3-AS1 Gene

Disorders for THUMPD3-AS1 Gene

Additional Disease Information for THUMPD3-AS1

No disorders were found for THUMPD3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for THUMPD3-AS1 Gene

Publications for THUMPD3-AS1 Gene

  1. Deletion of 3p25.3 in a patient with intellectual disability and dysmorphic features with further definition of a critical region. (PMID: 23613140) Kellogg G … Wallerstein R (American journal of medical genetics. Part A 2013) 3 58
  2. Identification and targeting of the ROSA26 locus in human embryonic stem cells. (PMID: 18037879) Irion S … Keller G (Nature biotechnology 2007) 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for THUMPD3-AS1 Gene

Sources for THUMPD3-AS1 Gene

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