Free for academic non-profit institutions. Other users need a Commercial license

Aliases for THUMPD3-AS1 Gene

Subcategory (RNA class) for THUMPD3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for THUMPD3-AS1 Gene

  • THUMPD3 Antisense RNA 1 2 3 5
  • SETD5 Antisense RNA 1 2 3
  • SETD5-AS1 3

External Ids for THUMPD3-AS1 Gene

Previous HGNC Symbols for THUMPD3-AS1 Gene

  • SETD5-AS1

Previous GeneCards Identifiers for THUMPD3-AS1 Gene

  • GC03M009394

Summaries for THUMPD3-AS1 Gene

GeneCards Summary for THUMPD3-AS1 Gene

THUMPD3-AS1 (THUMPD3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for THUMPD3-AS1 Gene

Genomics for THUMPD3-AS1 Gene

Regulatory Elements for THUMPD3-AS1 Gene

Promoters for THUMPD3-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around THUMPD3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for THUMPD3-AS1 Gene

Chromosome:
3
Start:
9,349,689 bp from pter
End:
9,398,579 bp from pter
Size:
48,891 bases
Orientation:
Minus strand

Genomic View for THUMPD3-AS1 Gene

Genes around THUMPD3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
THUMPD3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for THUMPD3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for THUMPD3-AS1 Gene

Proteins for THUMPD3-AS1 Gene

Post-translational modifications for THUMPD3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for THUMPD3-AS1 Gene

Domains & Families for THUMPD3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for THUMPD3-AS1 Gene

Function for THUMPD3-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for THUMPD3-AS1 Gene

Localization for THUMPD3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for THUMPD3-AS1 Gene

Pathways & Interactions for THUMPD3-AS1 Gene

SuperPathways for THUMPD3-AS1 Gene

No Data Available

Interacting Proteins for THUMPD3-AS1 Gene

Gene Ontology (GO) - Biological Process for THUMPD3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for THUMPD3-AS1 Gene

Drugs & Compounds for THUMPD3-AS1 Gene

No Compound Related Data Available

Transcripts for THUMPD3-AS1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for THUMPD3-AS1 Gene

No ASD Table

Relevant External Links for THUMPD3-AS1 Gene

GeneLoc Exon Structure for
THUMPD3-AS1
ECgene alternative splicing isoforms for
THUMPD3-AS1

Expression for THUMPD3-AS1 Gene

mRNA expression in normal human tissues for THUMPD3-AS1 Gene

genes like me logo Genes that share expression patterns with THUMPD3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for THUMPD3-AS1 Gene

Orthologs for THUMPD3-AS1 Gene

Evolution for THUMPD3-AS1 Gene

ENSEMBL:
Gene Tree for THUMPD3-AS1 (if available)
TreeFam:
Gene Tree for THUMPD3-AS1 (if available)

No data available for Orthologs for THUMPD3-AS1 Gene

Paralogs for THUMPD3-AS1 Gene

No data available for Paralogs for THUMPD3-AS1 Gene

Variants for THUMPD3-AS1 Gene

Sequence variations from dbSNP and Humsavar for THUMPD3-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs13240 -- 9,390,066(+) tttgg(A/G)tattt nc-transcript-variant
rs1129692 -- 9,389,325(-) cttaa(C/G)tatct nc-transcript-variant
rs1047916 -- 9,389,184(-) tgata(A/C/G)agcaa nc-transcript-variant
rs1047921 -- 9,389,079(-) GGACA(C/G)CACTC nc-transcript-variant
rs2596913 -- 9,394,788(-) CTTCC(A/G)TGGTC intron-variant

Relevant External Links for THUMPD3-AS1 Gene

HapMap Linkage Disequilibrium report
THUMPD3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for THUMPD3-AS1 Gene

Disorders for THUMPD3-AS1 Gene

Relevant External Links for THUMPD3-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
THUMPD3-AS1

No disorders were found for THUMPD3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for THUMPD3-AS1 Gene

Publications for THUMPD3-AS1 Gene

  1. Deletion of 3p25.3 in a patient with intellectual disability and dysmorphic features with further definition of a critical region. (PMID: 23613140) Kellogg G. … Wallerstein R. (Am. J. Med. Genet. A 2013) 3 67
  2. Identification and targeting of the ROSA26 locus in human embryonic stem cells. (PMID: 18037879) Irion S. … Keller G. (Nat. Biotechnol. 2007) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for THUMPD3-AS1 Gene

Sources for THUMPD3-AS1 Gene

Back to Top

Content