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Aliases for THUMPD3-AS1 Gene

Subcategory (RNA class) for THUMPD3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for THUMPD3-AS1 Gene

  • THUMPD3 Antisense RNA 1 2 3 5
  • SETD5 Antisense RNA 1 2 3
  • SETD5-AS1 3

External Ids for THUMPD3-AS1 Gene

Previous HGNC Symbols for THUMPD3-AS1 Gene

  • SETD5-AS1

Previous GeneCards Identifiers for THUMPD3-AS1 Gene

  • GC03M009394

Summaries for THUMPD3-AS1 Gene

GeneCards Summary for THUMPD3-AS1 Gene

THUMPD3-AS1 (THUMPD3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for THUMPD3-AS1 Gene

Genomics for THUMPD3-AS1 Gene

Regulatory Elements for THUMPD3-AS1 Gene

Enhancers for THUMPD3-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F009896 1.4 Ensembl ENCODE 58.5 -501.6 -501629 8.2 HDGF PKNOX1 ZFP64 ARID4B SIN3A DMAP1 YBX1 YY1 SLC30A9 CBX5 RAD18 THUMPD3-AS1 IL17RC GHRLOS JAGN1 ENSG00000269982 CRELD1 PRRT3-AS1 CYCSP10 FANCD2
GH03F009975 1.4 Ensembl ENCODE 29.3 -579.6 -579635 4.8 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A ZNF2 FOS KLF13 SMARCB1 THUMPD3-AS1 FANCD2 ENSG00000269894 BRK1 PRRT3 CIDECP IL17RE RPUSD3 VHL JAGN1
GH03F009362 1.2 ENCODE 30.5 +35.4 35377 2.2 HDGF PKNOX1 ARNT CREB3L1 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 RAD18 THUMPD3-AS1 SRGAP3 FANCD2 LINC00852 THUMPD3 GHRLOS SETD5 PRRT3-AS1 ENSG00000254485
GH03F009394 1.2 ENCODE 28.9 -0.4 -413 9.8 CREB3L1 MLX FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC SRGAP3-AS3 SRGAP3-AS1 THUMPD3-AS1 SRGAP3 RNU6-882P RAD18 ENSG00000269894 FANCD2 TATDN2 FANCD2OS
GH03F009745 1.2 ENCODE 19.9 -350.1 -350091 5.9 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 THUMPD3-AS1 RNU6-882P ENSG00000269894 TATDN2 EMC3-AS1 TADA3 ARPC4 RPUSD3 OGG1 BRPF1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around THUMPD3-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for THUMPD3-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001356933 579 5201 CREB3L1 MLX FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC

Genomic Location for THUMPD3-AS1 Gene

Chromosome:
3
Start:
9,349,689 bp from pter
End:
9,398,579 bp from pter
Size:
48,891 bases
Orientation:
Minus strand

Genomic View for THUMPD3-AS1 Gene

Genes around THUMPD3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
THUMPD3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for THUMPD3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for THUMPD3-AS1 Gene

Proteins for THUMPD3-AS1 Gene

Post-translational modifications for THUMPD3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for THUMPD3-AS1 Gene

Domains & Families for THUMPD3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for THUMPD3-AS1 Gene

Function for THUMPD3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for THUMPD3-AS1 Gene

Localization for THUMPD3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for THUMPD3-AS1 Gene

Pathways & Interactions for THUMPD3-AS1 Gene

SuperPathways for THUMPD3-AS1 Gene

No Data Available

Interacting Proteins for THUMPD3-AS1 Gene

Gene Ontology (GO) - Biological Process for THUMPD3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for THUMPD3-AS1 Gene

Transcripts for THUMPD3-AS1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for THUMPD3-AS1 Gene

No ASD Table

Relevant External Links for THUMPD3-AS1 Gene

GeneLoc Exon Structure for
THUMPD3-AS1
ECgene alternative splicing isoforms for
THUMPD3-AS1

Expression for THUMPD3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for THUMPD3-AS1 Gene

genes like me logo Genes that share expression patterns with THUMPD3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for THUMPD3-AS1 Gene

Orthologs for THUMPD3-AS1 Gene

Evolution for THUMPD3-AS1 Gene

ENSEMBL:
Gene Tree for THUMPD3-AS1 (if available)
TreeFam:
Gene Tree for THUMPD3-AS1 (if available)

No data available for Orthologs for THUMPD3-AS1 Gene

Paralogs for THUMPD3-AS1 Gene

No data available for Paralogs for THUMPD3-AS1 Gene

Variants for THUMPD3-AS1 Gene

Sequence variations from dbSNP and Humsavar for THUMPD3-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1047824 -- 9,385,781(-) TTTTT(C/T)TCTTG nc-transcript-variant, downstream-variant-500B, utr-variant-3-prime
rs1047825 -- 9,385,779(-) TTTCT(C/T)TTGGC nc-transcript-variant, downstream-variant-500B, utr-variant-3-prime
rs1047916 -- 9,389,184(-) tgata(A/C)agcaa intron-variant, nc-transcript-variant
rs1047921 -- 9,389,079(-) GGACA(C/G)CACTC intron-variant, nc-transcript-variant
rs111360898 -- 9,398,850(+) GAGTC(A/C/T)TTGCT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for THUMPD3-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv277n21 CNV loss 19592680
nsv821981 CNV loss 20364138

Relevant External Links for THUMPD3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
THUMPD3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for THUMPD3-AS1 Gene

Disorders for THUMPD3-AS1 Gene

Relevant External Links for THUMPD3-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
THUMPD3-AS1

No disorders were found for THUMPD3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for THUMPD3-AS1 Gene

Publications for THUMPD3-AS1 Gene

  1. Deletion of 3p25.3 in a patient with intellectual disability and dysmorphic features with further definition of a critical region. (PMID: 23613140) Kellogg G. … Wallerstein R. (Am. J. Med. Genet. A 2013) 3 64
  2. Identification and targeting of the ROSA26 locus in human embryonic stem cells. (PMID: 18037879) Irion S. … Keller G. (Nat. Biotechnol. 2007) 3 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for THUMPD3-AS1 Gene

Sources for THUMPD3-AS1 Gene

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