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Aliases for THUMPD3-AS1 Gene

Subcategory (RNA class) for THUMPD3-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for THUMPD3-AS1 Gene

  • THUMPD3 Antisense RNA 1 2 3
  • SETD5 Antisense RNA 1 2 3
  • SETD5-AS1 3

External Ids for THUMPD3-AS1 Gene

Previous Symbols for THUMPD3-AS1 Gene

  • SETD5-AS1

Summaries for THUMPD3-AS1 Gene

GeneCards Summary for THUMPD3-AS1 Gene

THUMPD3-AS1 (THUMPD3 Antisense RNA 1) is an RNA Gene, and belongs to the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for THUMPD3-AS1 Gene

Genomics for THUMPD3-AS1 Gene

Genomic Location for THUMPD3-AS1 Gene

Start:
9,349,689 bp from pter
End:
9,398,579 bp from pter
Size:
48,891 bases
Orientation:
Minus strand

Genomic View for THUMPD3-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for THUMPD3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for THUMPD3-AS1 Gene

No data available for Regulatory Elements for THUMPD3-AS1 Gene

Proteins for THUMPD3-AS1 Gene

Post-translational modifications for THUMPD3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for THUMPD3-AS1 Gene

Domains for THUMPD3-AS1 Gene

Gene Families for THUMPD3-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with THUMPD3-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for THUMPD3-AS1 Gene

Function for THUMPD3-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for THUMPD3-AS1 Gene

Localization for THUMPD3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for THUMPD3-AS1 Gene

Pathways for THUMPD3-AS1 Gene

SuperPathways for THUMPD3-AS1 Gene

No Data Available

Interacting Proteins for THUMPD3-AS1 Gene

Gene Ontology (GO) - Biological Process for THUMPD3-AS1 Gene

None

No data available for Pathways by source for THUMPD3-AS1 Gene

Transcripts for THUMPD3-AS1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for THUMPD3-AS1 Gene

No ASD Table

Relevant External Links for THUMPD3-AS1 Gene

GeneLoc Exon Structure for
THUMPD3-AS1
ECgene alternative splicing isoforms for
THUMPD3-AS1

Expression for THUMPD3-AS1 Gene

mRNA expression in normal human tissues for THUMPD3-AS1 Gene

genes like me logo Genes that share expressions with THUMPD3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for THUMPD3-AS1 Gene

Orthologs for THUMPD3-AS1 Gene

Evolution for THUMPD3-AS1 Gene

ENSEMBL:
Gene Tree for THUMPD3-AS1 (if available)
TreeFam:
Gene Tree for THUMPD3-AS1 (if available)

No data available for Orthologs for THUMPD3-AS1 Gene

Paralogs for THUMPD3-AS1 Gene

No data available for Paralogs for THUMPD3-AS1 Gene

Variants for THUMPD3-AS1 Gene

Sequence variations from dbSNP and Humsavar for THUMPD3-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type MAF
rs13240 -- 9,390,066(+) tttgg(A/G)tattt nc-transcript-variant
rs1047916 -- 9,389,184(-) tgata(A/C)agcaa nc-transcript-variant
rs1047921 -- 9,389,079(-) GGACA(C/G)CACTC nc-transcript-variant
rs1129692 -- 9,389,325(-) cttaa(C/G)tatct nc-transcript-variant
rs2596913 -- 9,394,788(-) CTTCC(A/G)TGGTC intron-variant

Relevant External Links for THUMPD3-AS1 Gene

HapMap Linkage Disequilibrium report
THUMPD3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for THUMPD3-AS1 Gene

Disorders for THUMPD3-AS1 Gene

No disorders were found for THUMPD3-AS1 Gene.

No data available for UniProtKB/Swiss-Prot for THUMPD3-AS1 Gene

Publications for THUMPD3-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3

Products for THUMPD3-AS1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate THUMPD3-AS1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for THUMPD3-AS1
    • Block miRNA regulation of THUMPD3-AS1 using miScript Target Protectors

    Sources for THUMPD3-AS1 Gene

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