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Aliases for THUMPD3-AS1 Gene

Subcategory (RNA class) for THUMPD3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for THUMPD3-AS1 Gene

  • THUMPD3 Antisense RNA 1 2 3 5
  • SETD5 Antisense RNA 1 2 3
  • SETD5-AS1 3

External Ids for THUMPD3-AS1 Gene

Previous HGNC Symbols for THUMPD3-AS1 Gene

  • SETD5-AS1

Previous GeneCards Identifiers for THUMPD3-AS1 Gene

  • GC03M009394

Summaries for THUMPD3-AS1 Gene

GeneCards Summary for THUMPD3-AS1 Gene

THUMPD3-AS1 (THUMPD3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for THUMPD3-AS1 Gene

Genomics for THUMPD3-AS1 Gene

Regulatory Elements for THUMPD3-AS1 Gene

Enhancers for THUMPD3-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G009896 1.6 Ensembl ENCODE dbSUPER 30.7 -501.6 -501629 8.2 HDGF HNRNPUL1 PKNOX1 FOXA2 ARNT ZFP64 ARID4B SIN3A YBX1 DMAP1 RAD18 THUMPD3-AS1 IL17RC CYCSP10 JAGN1 ENSG00000269982 CRELD1 PRRT3-AS1 RPUSD3 PRRT3
GH03G009362 1.2 ENCODE 30.5 +35.4 35377 2.2 MLX CREB3L1 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC RAD18 THUMPD3-AS1 SRGAP3 FANCD2 LINC00852 THUMPD3 GHRLOS SETD5 PRRT3-AS1 ENSG00000254485
GH03G009381 1.4 FANTOM5 dbSUPER 19.4 +17.1 17098 0.4 HDGF PKNOX1 FOXA2 ARNT CREB3L1 MLX ARID4B SIN3A DMAP1 FEZF1 THUMPD3-AS1 THUMPD3 SETD5 RAD18 ENSG00000254485
GH03G009394 1.4 ENCODE dbSUPER 19.1 -0.4 -413 9.8 MLX CREB3L1 AGO1 DMAP1 FEZF1 YY1 SLC30A9 ZNF143 ZNF263 SP3 SRGAP3 THUMPD3-AS1 RAD18 FANCD2 LINC00852 GC03P009403
GH03G009730 1.2 ENCODE 18.3 -333.5 -333455 3.0 CREB3L1 AGO1 FEZF1 DMAP1 YY1 ZNF416 ZNF143 ZNF263 SP3 NFYC EMC3-AS1 ENSG00000269886 ENSG00000269982 CYCSP10 ENSG00000269894 THUMPD3-AS1 RAD18 PRRT3 TATDN2 TADA3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around THUMPD3-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for THUMPD3-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000148275 -510 4801 MLX CREB3L1 AGO1 DMAP1 FEZF1 YY1 SLC30A9 ZNF143 ZNF263 SP3

Genomic Location for THUMPD3-AS1 Gene

Chromosome:
3
Start:
9,349,689 bp from pter
End:
9,398,579 bp from pter
Size:
48,891 bases
Orientation:
Minus strand

Genomic View for THUMPD3-AS1 Gene

Genes around THUMPD3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
THUMPD3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for THUMPD3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for THUMPD3-AS1 Gene

Proteins for THUMPD3-AS1 Gene

Post-translational modifications for THUMPD3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for THUMPD3-AS1 Gene

Domains & Families for THUMPD3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for THUMPD3-AS1 Gene

Function for THUMPD3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for THUMPD3-AS1 Gene

Localization for THUMPD3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for THUMPD3-AS1 Gene

Pathways & Interactions for THUMPD3-AS1 Gene

SuperPathways for THUMPD3-AS1 Gene

No Data Available

Interacting Proteins for THUMPD3-AS1 Gene

Gene Ontology (GO) - Biological Process for THUMPD3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for THUMPD3-AS1 Gene

Transcripts for THUMPD3-AS1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for THUMPD3-AS1 Gene

No ASD Table

Relevant External Links for THUMPD3-AS1 Gene

GeneLoc Exon Structure for
THUMPD3-AS1
ECgene alternative splicing isoforms for
THUMPD3-AS1

Expression for THUMPD3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for THUMPD3-AS1 Gene

genes like me logo Genes that share expression patterns with THUMPD3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for THUMPD3-AS1 Gene

Orthologs for THUMPD3-AS1 Gene

Evolution for THUMPD3-AS1 Gene

ENSEMBL:
Gene Tree for THUMPD3-AS1 (if available)
TreeFam:
Gene Tree for THUMPD3-AS1 (if available)

No data available for Orthologs for THUMPD3-AS1 Gene

Paralogs for THUMPD3-AS1 Gene

No data available for Paralogs for THUMPD3-AS1 Gene

Variants for THUMPD3-AS1 Gene

Sequence variations from dbSNP and Humsavar for THUMPD3-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000037942 -- 9,398,907(+) CTGCA(A/G)TCAGC intron-variant, upstream-variant-2KB
rs1000049702 -- 9,395,166(+) ACAAC(-/A)AAAAA intron-variant
rs1000140439 -- 9,392,559(+) CTTCT(A/G)GATTT intron-variant
rs1000209959 -- 9,392,582(+) GGTGC(C/T)CTACA intron-variant
rs1000225565 -- 9,396,483(+) GCGCC(A/G)GTTTT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for THUMPD3-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv277n21 CNV loss 19592680
nsv821981 CNV loss 20364138

Relevant External Links for THUMPD3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
THUMPD3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for THUMPD3-AS1 Gene

Disorders for THUMPD3-AS1 Gene

Relevant External Links for THUMPD3-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
THUMPD3-AS1

No disorders were found for THUMPD3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for THUMPD3-AS1 Gene

Publications for THUMPD3-AS1 Gene

  1. Deletion of 3p25.3 in a patient with intellectual disability and dysmorphic features with further definition of a critical region. (PMID: 23613140) Kellogg G. … Wallerstein R. (Am. J. Med. Genet. A 2013) 3 64
  2. Identification and targeting of the ROSA26 locus in human embryonic stem cells. (PMID: 18037879) Irion S. … Keller G. (Nat. Biotechnol. 2007) 3 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for THUMPD3-AS1 Gene

Sources for THUMPD3-AS1 Gene

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