THRA Gene
protein-coding GIFtS : 66
GC17P035472
thyroid hormone receptor, alpha (erythroblastic leukemia viral (v-erb-a) oncogene homolog, avian) (Previous names: thyroid hormone receptor, alpha (avian erythroblastic leukemia viral (v-erb-a) oncogene homolog) )Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database (Previous symbols: THRA1, THRA2, ERBA1 )
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Aliases & Descriptions for THRA
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases AR7 1 , 2 C-erbA-alpha 3 EAR-7 3 EAR-7.1/EAR-7.2 1 EAR7 2 , 3 ERB-T-1 2 ERBA 1 , 2 ERBA1 2 , 3 , 5 MGC000261 2 MGC43240 2 NR1A1 1 , 2 , 3 OTTHUMP00000164470 2 THRA1 2 , 3 , 5 THRA2 2 , 3 THRA3 1 c-ERBA-1 2 c-erbA-1 3
Descriptions ERBA-related 7 2 Nuclear receptor subfamily 1 group A member 1 3 avian erythroblastic leukemia viral (v-erb-a) oncogene homolog 2 thyroid hormone receptor alpha 2 thyroid hormone receptor, alpha 2 thyroid hormone receptor, alpha (avian erythroblastic leukemia viral (v-erb-a) oncogene homolog) 1 thyroid hormone receptor, alpha (erythroblastic leukemia viral (v-erb-a) oncogene homolog, avian) 2 triiodothyronine receptor 2
Search outside databases for aliases for THRA genePrevious GC identifers: GC17P037816 GC17M040309 GC17P038129 GC17P038595 GC17P038596
Summaries for THRA (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for THRA : The protein encoded by this gene is a nuclear hormone receptor for triiodothyronine. It is one ofthe several receptors for thyroid hormone, and has been shown to mediate the biological activitiesof thyroid hormone. Knockout studies in mice suggest that the different receptors, while havingcertain extent of redundancy, may mediate different functions of thyroid hormone. Alternativelyspliced transcript variants encoding distinct isoforms have been reported. [provided by RefSeq] UniProtKB/Swiss-Prot: THA_HUMAN, P10827 Function : Nuclear hormone receptor. High affinity receptor for triiodothyronine
Gene Wiki entry for THRA (Thyroid_hormone_receptor_alpha)
Genomic Location for THRA
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the THRA gene Entrez Gene cytogenetic band: 17q11.2 Ensembl cytogenetic band: 17q21.1 HGNC cytogenetic band: 17q21.1 THRA Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 17 GeneLoc Exon Structure
GeneLoc location for GC17P035472:
(about GC identifiers )
Start:
35,472,589 bp from pter
End:
35,503,646 bp from pter
Size:
31,058 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000017.9 NT_010755.15 Proteins for THRA
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: THA_HUMAN, P10827 (See
protein sequence )Recommended Name: Thyroid hormone receptor alpha Size : 490 amino acids; 54816 Da
Subunit : Interacts with NCOA3 and NCOA6 coactivators, leading to a strong increase of transcriptionof target genes. Probably interacts with SFPQ. Interacts with C1D (By similarity). Interacts withAKAP13
Subcellular location : Nucleus
PDB structure from and Proteopedia : 1NAV (3D)
 2H79 (3D)
 
Secondary accessions : P21205 Q8N6A1 Q96H73Alternative splicing : 4 isoforms : P10827-1 P10827-2 P10827-3 P10827-4
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_003241.2 NP_955366.1 ENSEMBL proteins: ENSP00000264637 ENSP00000377679 Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: THRA 1 Gene Ontology (GO) cellular component term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0005634 nucleus
IEA --
About this table Antibodies for THRA: Assays for THRA:
Protein
Domains/ Families for THRA(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P10827 ProtoNet protein and cluster: P10827
2 Blocks protein families : IPB001723 Steroid hormone receptor signature IPB001728 Thyroid hormone receptor signature UniProtKB/Swiss-Prot: THA_HUMAN, P10827 Domain : Composed of three domains: a modulating N-terminal domain, a DNA-binding domain and aC-terminal steroid-binding domain Similarity : Belongs to the nuclear hormone receptor family. NR1 subfamilySimilarity : Contains 1 nuclear receptor DNA-binding domain
Gene Function for THRA
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_003250 Applied Biosystems Silencer ® siRNAs for THRA Sigma-Aldrich siRNA and siRNA Panels for THRA Sigma-Aldrich shRNA Panels and shRNA for THRA Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_003250                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_003250                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_003250  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_003250 UniProtKB/Swiss-Prot: THA_HUMAN, P10827 Function : Nuclear hormone receptor. High affinity receptor for triiodothyronine
Genatlas biochemistry entry for THRA :thyroid hormone receptor,alpha 1,ubiquitous,with two alternatively spliced isoforms THRA1,a hormonebinding receptor and THRA2,not binding hormone but inhibiting THR transactivation,also encodingNR1D1 (alpha transcript) on the opposite strand (see symbol),steroid/thyroid hormone receptorsuperfamily
15/21 MGI mutant phenotypes (inferred from 9 alleles ) (MGI details for Thra) (see all 21
):5/7 Gene Ontology (GO) molecular function terms (links to tree view) (see all 7
):
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Pathways & Interactions for THRA
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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1 Sigma-Aldrich "Your Favorite Gene" Pathway for THRA (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for THRA 5/50 Interacting proteins for THRA (ENSP00000264637 3 P10827 1 ) via UniProtKB, MINT, and/or STRING (see all 50
)About this table 2 Gene Ontology (GO) biological process terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0006355 regulation of transcription, DNA-dependent
IEA -- GO:0006366 transcription from RNA polymerase II promoter
TAS 2879242
About this table
Drugs & Compounds for THRA (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for THRA 6 Novoseek chemical compound relationships for THRA gene
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Transcripts for THRA(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_003250 Sigma-Aldrich siRNA and siRNA Panels for THRA Sigma-Aldrich shRNA Panels and shRNA for THRA Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_003250 NM_199334
REFSEQ mRNAs for THRA gene (2 alternative transcripts): NM_003250.4 NM_199334.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_003250 NM_199334
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_003250                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_003250                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_003250  
Additional cDNA sequence: AB209346.1 AB307686.1 AF522368.1 AK290071.1 AK290530.1 AK311344.1 BC000261.1 BC002728.2 BC008851.2 BC035137.1 BC062421.1 CR541915.1 CR596083.1 CR602782.1 J03239.1 M24899.1 M24900.1 X55005.1 Y00479.1
21 DOTS entries : DT.118297 DT.118299 DT.100807968 DT.95378840 DT.87015530 DT.95251994 DT.91758665 DT.75124373 DT.97847061 DT.91758657 DT.100740261 DT.99953623 DT.100031087 DT.120980017 DT.87015531 DT.91740668 DT.100665357 DT.100783912 DT.120980106 DT.91937029 DT.92036477
24/294 AceView cDNA sequences (see all 294
):AL047482 BG152611 AL043752 BM706074 BU737664 BC035137 BQ672969 BU730463 BX279655 BF941812 CA433614 AI391498 NM_199334 BC062421 CD671434 CA454666 AL043801 AI418035 F02406 BC002728 BQ050643 BQ529293 BM694559 BM907134
highest scoring ESTs for THRA :M24899 AL541718 AL550681 AL566445 AL567981 BF344977 BF346358 BG339926 BG911210 BI602714
Unigene Cluster for THRA: Thyroid hormone receptor, alpha (erythroblastic leukemia viral (v-erb-a) oncogene homolog, avian) Hs.724 [show with all ESTs ] Unigene Representative Sequence: AB209346 GeneLoc Exon Structure 2 Ensembl transcripts including schematic representations : ENST00000264637
ENST00000394121
Expression for THRA
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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THRA expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for THRA 1 / 2 / 3
12 probe-sets matching THRA gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TCTGTATCCCSOURCE GeneReport for Unigene cluster: Hs.724 Expression variation in blood from EXPOLDB for THRA
Orthologs for THRA
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for THRA gene from 5/8 species (see all 8
)
About this table Species with no ortholog for THRA ENSEMBL Gene Tree for THRA Paralogs for THRA (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for THRA gene VDR 2 NR1I2 2 NR1I3 2 THRB 2
SNPs/Variants for THRA (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for THRA (up to first 250kb)
Disorders & Mutations for THRA
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 190120
10/11 Novoseek disease relationships for THRA gene (see all 11
)
About this table Genatlas disease: THRA hyperthyroxinemia,euthyroidal Genetic Association Database: THRA Human Genome Epidemiology Navigator: THRA (4 documents) Tumor Gene Database : THRA Breast Cancer Gene Database : THRA
Medical News for THRA (Possibly Related Articles in
Doctor's Guide )
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--
Publications for THRA (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/209 PubMed articles for THRA gene (see all 209
): Genomic organization of the human thyroid hormone receptor alpha (c- erbA-1) gene. (PubMed id 1850510) 1, 3, 4 Laudet V....Saule S. (1991) Thyroid cancer susceptibility and THRA1 and BAT-40 repeats polymorphisms. (PubMed id 15767343) 3, 6 Baida A....Velazquez A. (2005) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) A nuclear factor ASC-2, as a cancer-amplified transcriptional coactivator essential for ligand-dependent transactivation by nuclear receptors in vivo. (PubMed id 10567404) 3, 4 Lee S.-K.... Lee J.W. (1999) Characterization of Brx, a novel Dbl family member that modulates estrogen receptor action. (PubMed id 9627117) 3, 4 Rubino D.... Segars J. (1998) Nuclear receptor coactivator ACTR is a novel histone acetyltransferase and forms a multimeric activation complex with P/CAF and CBP/p300. (PubMed id 9267036) 3, 4 Chen H.... Evans R.M. (1997) Two erbA homologs encoding proteins with different T3 binding capacities are transcribed from opposite DNA strands of the same genetic locus. (PubMed id 2539258) 3, 4 Miyajima N.... Yamamoto T. (1989) Characterization of a third human thyroid hormone receptor coexpressed with other thyroid hormone receptors in several tissues. (PubMed id 2464749) 3, 4 Nakai A.... Degroot L.J. (1988) Characterization of a thyroid hormone receptor expressed in human kidney and other tissues. (PubMed id 3357890) 3, 4 Nakai A.... Degroot L.J. (1988) A novel thyroid hormone receptor encoded by a cDNA clone from a human testis library. (PubMed id 3672126) 3, 4 Benbrook D. and Pfahl M. (1987)
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Genome Databases showing THRA
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing THRA
(According to HUGE )
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--
Specialized Databases showing THRA (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for THRA (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for THRA:
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