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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

THOC7 Gene

protein-coding   GIFtS: 49
GCID: GC03M063795

THO complex 7 homolog (Drosophila)

 Explore 3 diseases affiliated with
THOC7 via our new
 Human Malady Compendium 
Biological research products
for THOC7
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
THO Complex 7 Homolog (Drosophila)1 2     HTREX301
NIF3L1BP11 2 3 5     NIF3L1-Binding Protein 12 3
FSAP241     FLJ234451
Functional Spliceosome-Associated Protein 242 3     Ngg1 Interacting Factor 3 Like 1 Binding Protein 12
Ngg1-Interacting Factor 3-Like Protein 1-Binding Protein 12 3     THO Complex Subunit 7 Homolog2

External Ids:    HGNC: 298741   Entrez Gene: 801452   Ensembl: ENSG000001636347   OMIM: 6119655   UniProtKB: Q6I9Y23   

Export aliases for THOC7 gene to outside databases


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: THOC7_HUMAN, Q6I9Y2
Function: Component of the THO subcomplex of the TREX complex. The TREX complex specifically associates with spliced
mRNA and not with unspliced pre-mRNA. It is recruited to spliced mRNAs by a transcription-independent mechanism. Binds
to mRNA upstream of the exon-junction complex (EJC) and is recruited in a splicing- and cap-dependent manner to a
region near the 5' end of the mRNA where it functions in mRNA export. The recruitment occurs via an interaction
between ALYREF/THOC4 and the cap-binding protein NCBP1. DDX39B functions as a bridge between ALYREF/THOC4 and the THO
complex. The TREX complex is essential for the export of Kaposi's sarcoma-associated herpesvirus (KSHV) intronless
mRNAs and infectious virus production. The recruitment of the TREX complex to the intronless viral mRNA occurs via an
interaction between KSHV ORF57 protein and ALYREF/THOC4




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000003.11  NC_018914.1  NT_022517.18  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the THOC7 gene promoter:
         TBP   PPAR-gamma1   POU2F1a   TFIID   PPAR-gamma2   FOXL1   GATA-1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidTHOC7 promoter sequence
   Search SABiosciences Chromatin IP Primers for THOC7

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat THOC7


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 3p14.1   Ensembl cytogenetic band:  3p14.1   HGNC cytogenetic band: 3p14.1

THOC7 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
THOC7 gene location

GeneLoc information about chromosome 3         GeneLoc Exon Structure

GeneLoc location for GC03M063795:  view genomic region     (about GC identifiers)

Start:
63,819,546 bp from pter      End:
63,849,597 bp from pter
Size:
30,052 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: THOC7_HUMAN, Q6I9Y2 (See protein sequence)
Recommended Name: THO complex subunit 7 homolog  
Size: 204 amino acids; 23743 Da
Subunit: Component of the THO complex, which is composed of THOC1, THOC2, THOC5, THOC6 and THOC7. Together with THOC3,
ALYREF/THOC4 and DDX39B, THO forms the transcription/export (TREX) complex. Interacts with NIF3L1 and THOC5
Subcellular location: Cytoplasm. Nucleus. Note=Interaction with THOC5 is required for nuclear localization
Secondary accessions: Q6P1L3 Q8WUF2 Q9H5H0

Explore the universe of human proteins at neXtProt for THOC7: NX_Q6I9Y2

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q6I9Y2

  • THOC7 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_079351.2  
    ENSEMBL proteins: 
     ENSP00000295899   ENSP00000418518   ENSP00000419682   ENSP00000419443  

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    Novus Biologicals THOC7 Protein
    Novus Biologicals THOC7 Lysate
    Browse Sino Biological Recombinant Proteins
    Browse ProSpec Recombinant Proteins
    Uscn Proteins for THOC7

    Gene Ontology (GO): 5/6 cellular component terms (GO ID links to tree view) (see all 6):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000346transcription export complex IDA15833825
    GO:0000347THO complex IDA15998806
    GO:0000445THO complex part of transcription export complex IDA15998806
    GO:0005634nucleus IDA--
    GO:0005730NOT nucleolus IDA--


    THOC7 for ontologies           About GeneDecksing



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    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    THOC7 for domains           About GeneDecksing

    2 InterPro domains/families:
     IPR008501 THOC7/Mft1
     IPR018018 THOC7

    Graphical View of Domain Structure for InterPro Entry Q6I9Y2

    ProtoNet protein and cluster: Q6I9Y2

    UniProtKB/Swiss-Prot: THOC7_HUMAN, Q6I9Y2
    Similarity: Belongs to the THOC7 family


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: THOC7_HUMAN, Q6I9Y2
    Function: Component of the THO subcomplex of the TREX complex. The TREX complex specifically associates with spliced
    mRNA and not with unspliced pre-mRNA. It is recruited to spliced mRNAs by a transcription-independent mechanism. Binds
    to mRNA upstream of the exon-junction complex (EJC) and is recruited in a splicing- and cap-dependent manner to a
    region near the 5' end of the mRNA where it functions in mRNA export. The recruitment occurs via an interaction
    between ALYREF/THOC4 and the cap-binding protein NCBP1. DDX39B functions as a bridge between ALYREF/THOC4 and the THO
    complex. The TREX complex is essential for the export of Kaposi's sarcoma-associated herpesvirus (KSHV) intronless
    mRNAs and infectious virus production. The recruitment of the TREX complex to the intronless viral mRNA occurs via an
    interaction between KSHV ORF57 protein and ALYREF/THOC4

    miRNA
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    Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003723RNA binding IEA--
    GO:0005515protein binding IPI19059247


    THOC7 for ontologies           About GeneDecksing


    2 GenomeRNAi human phenotypes for THOC7:
     Increased gamma-H2AX phosphory  Synthetic lethal with Ras 


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways  About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1RNA transport
    RNA transport1.00

    Pathway sources
    See GeneCards unified pathways
    Show all pathways



    1         Kegg Pathway  (Kegg details for THOC7):
        RNA transport


    THOC7 for pathways           About GeneDecksing

    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for THOC7

    STRING Interaction Network Preview (showing 5 interactants - click image to see 18)

    5/21 Interacting proteins for THOC7 (Q6I9Y22, 3 ENSP000002958994) via UniProtKB, MINT, STRING, and/or I2D (see all 21)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    CHD3Q128732, 3MINT-64594 I2D: score=5 
    THOC5Q137692, 3, ENSP000003809694MINT-6800005 MINT-6799962 MINT-6800089 MINT-6799989 MINT-6800108 MINT-6800071 MINT-6799973 I2D: score=2 STRING: ENSP00000380969
    THOC1Q96FV92, ENSP000002616004MINT-6800089 MINT-6800071 STRING: ENSP00000261600
    GOT2P005052, 3, ENSP000002452064MINT-63341 I2D: score=5 STRING: ENSP00000245206
    MED8Q96G253, ENSP000002906634I2D: score=2 STRING: ENSP00000290663
    About this table

    Gene Ontology (GO): 4 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006397mRNA processing IEA--
    GO:0006406mRNA export from nucleus IDA17190602
    GO:0008380RNA splicing IEA--
    GO:0046784intronless viral mRNA export from host nucleus IDA18974867


    THOC7 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for THOC7
    Search CenterWatch for drugs/clinical trials and news about THOC7 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for THOC7 gene: 
    NM_025075.2  

    Unigene Cluster for THOC7:

    THO complex 7 homolog (Drosophila)
    Hs.288151  [show with all ESTs]
    Unigene Representative Sequence: BF790283
    7 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000295899(uc003dlt.4 uc003dlu.4) ENST00000469584 ENST00000473141
    ENST00000469153 ENST00000498422 ENST00000464327 ENST00000487570

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    Additional cDNA sequence: 

    AK027098.1 AK225110.1 BC020599.2 BC065012.1 CR457373.1 

    6 DOTS entries:

    DT.447610  DT.95170210  DT.100774161  DT.100735002  DT.120885739  DT.120885691 

    24/152 AceView cDNA sequences (see all 152):

    CB121868 AA782524 BE884407 BU660275 CB528375 BU167522 N25170 AI273401 
    AI298428 BF831844 H98650 BI758998 BQ018944 AI085280 BQ271383 CA313791 
    AI242257 BI544790 AA441936 BM700193 T93541 AA922295 AI022961 AI869248 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    THOC7 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: ACCATAATGT

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image
    See THOC7 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for THOC7

    SOURCE GeneReport for Unigene cluster: Hs.288151
        SABiosciences Custom PCR Arrays for THOC7
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    In Situ
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of eukaryotes.

    Orthologs for THOC7 gene from 9/27 species (see all 27)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Thoc71 , 5 THO complex 7 homolog (Drosophila)1, 5 91.01(n)1
    97.55(a)1
      14 (7.08 cM)5
    662311  NM_025435.21  NP_079711.11 
     139490145 
    chicken
    (Gallus gallus)
    Aves THOC71 THO complex 7 homolog (Drosophila) 81.12(n)
    93.1(a)
      416077  NM_001098238.1  NP_001091708.1 
    lizard
    (Anolis carolinensis)
    Reptilia THOC76
    --
    90(a)
    1 ↔ 1
    GL343210.1(2021078-2034399)
    African clawed frog
    (Xenopus laevis)
    Amphibia nif3l1bp1-prov2 Ngg1 interacting factor 3 like 1 binding protein 1 79.77(n)    BC053810.1 
    zebrafish
    (Danio rerio)
    Actinopterygii wufa20e082 Transcribed sequence with moderate similarity to protein more 76.94(n)    CF550203.2 
    fruit fly
    (Drosophila melanogaster)
    Insecta thoc71 CG17143-PA 47.64(n)
    38.89(a)
      38033  NM_167804.2  NP_728489.2 
    worm
    (Caenorhabditis elegans)
    Secernentea B0513.26
    --
    25(a)
    1 ↔ 1
    IV(13882707-13884152)
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons THO71 Tho complex subunit 7/Mft1p 45.57(n)
    36.7(a)
      831542  NM_121685.4  NP_568339.1 
    rice
    (Oryza sativa)
    Liliopsida Os08g01600001 hypothetical protein 43.32(n)
    31.98(a)
      4344717  NM_001067581.1  NP_001061046.1 


    ENSEMBL Gene Tree for THOC7 (if available)
    TreeFam Gene Tree for THOC7 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
      --

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/376 NCBI SNPs in THOC7 are shown (see all 376    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 3 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs26783511,2
    C,--63819060(+) GTGAGC/TCACCA 2 -- int11Minor allele frequency- T:0.50NA 2
    rs1437203341,2
    --63819250(+) TGCACG/TATTTT 2 -- int10--------
    rs767829091,2
    F,--63819277(+) TTAACG/ATCCCA 2 -- int11Minor allele frequency- A:0.03WA 118
    rs356794641,2
    C,F,H,--63819523(+) ACCTAG/CAATAT 2 -- int115Minor allele frequency- C:0.06NS EA NA WA 1894
    rs1481036861,2
    --63819741(+) TACCAC/TATTTT 2 -- ut31 int10--------
    rs1440023941,2
    C,--63819766(+) CATGTA/TGCTAT 2 -- ut31 int10--------
    rs800720811,2
    C,--63819808(+) CCTGTC/TTATGG 3 * syn1 int11Minor allele frequency- T:0.01NA 120
    rs2007830791,2
    --63819830(+) TTTCCA/GTGCTT 3 T M mis1 int10--------
    rs1452288571,2
    C,F--63819848(+) GAGCTT/GCTTCT 3 /E /A int1 mis11Minor allele frequency- G:0.00NA 4550
    rs1998676181,2
    --63819871(+) TTTTCA/CTCATC 3 E D mis1 int10--------

    HapMap Linkage Disequilibrium report for THOC7 (63819546 - 63849597 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for THOC7: --

    SABiosciences Cancer Mutation PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    THOC7 for disorders           About GeneDecksing

    OMIM gene information: 611965    OMIM disorders: --

    3 diseases for THOC7:    About MalaCards
    kaposi's sarcoma    sarcoma    breast cancer

    Human Genome Epidemiology (HuGE) Navigator: THOC7 (1 document)

    Export disorders for THOC7 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for THOC7 gene, integrated from 9 sources (see all 23):
    (articles sorted by number of sources associating them with THOC7)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Identification and characterization of NIF3L1 BP1, a novel cytoplasmic interaction partner of the NIF3L1 protein. (PubMed id 12951069)1, 2, 3 Tascou S.... Burfeind P. (2003)
    2. Nuclear localization of the pre-mRNA associating protein THOC7 depends upon its direct interaction with Fms tyrosine kinase interacting protein (FMIP). (PubMed id 19059247)1, 2 El Bounkari O.... Tamura T. (2009)
    3. Recruitment of the complete hTREX complex is required for Kaposi's sarcoma-associated herpesvirus intronless mRNA nuclear export and virus replication. (PubMed id 18974867)1, 2 Boyne J.R.... Whitehouse A. (2008)
    4. Human mRNA export machinery recruited to the 5' end of mRNA. (PubMed id 17190602)1, 2 Cheng H.... Reed R. (2006)
    5. Recruitment of the human TREX complex to mRNA during splicing. (PubMed id 15998806)1, 2 Masuda S.... Reed R. (2005)
    6. Linking transcriptional elongation and messenger RNA export to metastatic breast cancers. (PubMed id 15833825)1, 2 Guo S.... Shiekhattar R. (2005)
    7. A census of human soluble protein complexes. (PubMed id 22939629)1 Havugimana P.C....Emili A. (2012)
    8. Methods for quantification of in vivo changes in prote in ubiquitination following proteasome and deubiquitinase inhibition. (PubMed id 22505724)1 Udeshi N.D....Carr S.A. (2012)
    9. Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (2011)
    10. A proteome-wide, quantitative survey of in vivo ubiqui tylation sites reveals widespread regulatory roles. (PubMed id 21890473)1 Wagner S.A....Choudhary C. (2011)

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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 80145 HGNC: 29874 AceView: NIF3L1BP1 Ensembl:ENSG00000163634 euGenes: HUgn80145
    ECgene: THOC7 Kegg: 80145 H-InvDB: THOC7

    (According to HUGE)
    About This Section
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    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for THOC7 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
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    Patent Information for THOC7 gene:
    Search GeneIP for patents involving THOC7

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