Aliases for THNSL2 Gene
Aliases for THNSL2 Gene
External Ids for THNSL2 Gene
- HGNC: 25602
- Entrez Gene: 55258
- Ensembl: ENSG00000144115
- OMIM: 611261
- UniProtKB: Q86YJ6
Previous GeneCards Identifiers for THNSL2 Gene
- GC02P088251
- GC02P088469
- GC02P087392
Summaries for THNSL2 Gene
-
This gene encodes a threonine synthase-like protein. A similar enzyme in mouse can catalyze the degradation of O-phospho-homoserine to a-ketobutyrate, phosphate, and ammonia. This protein also has phospho-lyase activity on both gamma and beta phosphorylated substrates. In mouse an alternatively spliced form of this protein has been shown to act as a cytokine and can induce the production of the inflammatory cytokine IL6 in osteoblasts. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Sep 2011]
GeneCards Summary for THNSL2 Gene
THNSL2 (Threonine Synthase Like 2) is a Protein Coding gene. Gene Ontology (GO) annotations related to this gene include cytokine activity and lyase activity. An important paralog of this gene is THNSL1.
UniProtKB/Swiss-Prot for THNSL2 Gene
-
Isoform 1: Acts as a catabolic phospho-lyase on both gamma- and beta-phosphorylated substrates. Degrades O-phospho-threonine (PThr) to alpha-ketobutyrate, ammonia and phosphate (By similarity).
-
Isoform SOFAT: Potent inducer of osteoblastic production of IL6. May act to exacerbate inflammation and/or bone turnover under inflammatory conditions.
Additional gene information for THNSL2 Gene
No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for THNSL2 Gene
Genomics for THNSL2 Gene
GeneHancer (GH) Regulatory Elements for THNSL2 Gene
GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
---|---|---|---|---|---|---|---|---|---|---|
GH02I088169 | Promoter/Enhancer | 1.5 | EPDnew Ensembl ENCODE | 629.5 | +0.2 | 213 | 1.7 | POLR2A ZBTB11 PRDM10 ZFX ZBTB26 GABPA | THNSL2 LOC101928347 FABP1 | |
GH02I088171 | Promoter | 0.5 | EPDnew | 550.8 | +1.2 | 1212 | 0.1 | THNSL2 LOC101928347 PIR56046 | ||
GH02I088160 | Enhancer | 1.1 | ENCODE dbSUPER | 82.5 | -10.2 | -10218 | 0.2 | ELF3 ARID4B DMAP1 ZSCAN9 RAD21 RARA YY1 SLC30A9 ARID2 ZNF143 | THNSL2 FABP1 GC02P088146 LOC101928347 | |
GH02I088125 | Promoter/Enhancer | 1.6 | EPDnew ENCODE dbSUPER | 33.8 | -41.3 | -41309 | 6.7 | FOXA2 MLX ARID4B ZNF48 ETS1 YY1 PAF1 RXRA SP5 NFYC | FABP1 THNSL2 KRCC1 GC02P088146 | |
GH02I088053 | Promoter/Enhancer | 2.3 | EPDnew FANTOM5 Ensembl ENCODE | 15.5 | -114.8 | -114750 | 3.1 | HDGF PKNOX1 SMAD1 ARNT ARID4B SIN3A DMAP1 YY1 SLC30A9 POLR2B | KRCC1 THNSL2 LOC102724642 LOC730268 GC02M088051 PIR45221 |
Regulatory Element Products
Genomic Locations for THNSL2 Gene
- chr2:88,170,295-88,186,637
- (GRCh38/hg38)
- Size:
- 16,343 bases
- Orientation:
- Plus strand
- chr2:88,469,835-88,486,146
- (GRCh37/hg19)
Genomic View for THNSL2 Gene
- Cytogenetic band:
-
- 2p11.2 by Ensembl
- 2p11.2 by Entrez Gene
- 2p11.2 by HGNC


RefSeq DNA sequence for THNSL2 Gene
Proteins for THNSL2 Gene
-
Protein details for THNSL2 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q86YJ6-THNS2_HUMAN
- Recommended name:
- Threonine synthase-like 2
- Protein Accession:
- Q86YJ6
- B3KTB1
- B5MDX8
- B7WPF8
- D9ZZB8
- Q6P2M7
- Q6PI27
- Q9NV54
Protein attributes for THNSL2 Gene
- Size:
- 484 amino acids
- Molecular mass:
- 54116 Da
- Cofactor:
- Name=pyridoxal 5-phosphate; Xref=ChEBI:CHEBI:597326;
- Quaternary structure:
- No Data Available
- SequenceCaution:
-
- Sequence=AAX88906.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; Sequence=BAA91904.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};
Protein Expression for THNSL2 Gene
Selected DME Specific Peptides for THNSL2 Gene
- Q86YJ6:
-
- PRCCLAPASA
- AFSRFRHR
- TSGDTGS
Post-translational modifications for THNSL2 Gene
Other Protein References for THNSL2 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
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Domains & Families for THNSL2 Gene
Gene Families for THNSL2 Gene
- Human Protein Atlas (HPA):
-
- Predicted intracellular proteins
Protein Domains for THNSL2 Gene
- InterPro:
- Blocks:
- ProtoNet:
Suggested Antigen Peptide Sequences for THNSL2 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
Q86YJ6- Family:
-
- Belongs to the threonine synthase family.
Function for THNSL2 Gene
Molecular function for THNSL2 Gene
- UniProtKB/Swiss-Prot Function:
- Isoform 1: Acts as a catabolic phospho-lyase on both gamma- and beta-phosphorylated substrates. Degrades O-phospho-threonine (PThr) to alpha-ketobutyrate, ammonia and phosphate (By similarity).
- UniProtKB/Swiss-Prot Function:
- Isoform SOFAT: Potent inducer of osteoblastic production of IL6. May act to exacerbate inflammation and/or bone turnover under inflammatory conditions.
Enzyme Numbers (IUBMB) for THNSL2 Gene
Phenotypes From GWAS Catalog for THNSL2 Gene
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0003674 | molecular_function | ND | -- |
GO:0004795 | NOT threonine synthase activity | IBA | -- |
GO:0005125 | cytokine activity | IEA | -- |
GO:0016829 | lyase activity | IEA | -- |
GO:0030170 | pyridoxal phosphate binding | IEA,ISS | 17034760 |
Phenotypes for THNSL2 Gene
- GenomeRNAi human phenotypes for THNSL2:
-
- Increased vaccinia virus (VACV) infection
- Dynamic nuclei (hole, folded or small irregular)
- Increased transferrin (TF) endocytosis
- Decreased HIV-LTR-beta-galactosidase protein expression
- Decreased viability of wild-type and TP53 knockout cells
- Decreased Tat-dependent HIV-LTR-beta-galactosidase protein expression
- Increased shRNA abundance with PLX4720
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- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
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No data available for Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for THNSL2 Gene
Localization for THNSL2 Gene
Subcellular locations from UniProtKB/Swiss-Prot for THNSL2 Gene
- Isoform SOFAT: Secreted. Note=Secreted by activated T-cells via a calcineurin-independent pathway.
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0005575 | cellular_component | ND | -- |
GO:0005576 | extracellular region | IEA | -- |
GO:0005615 | extracellular space | IEA | -- |
No data available for Subcellular locations from the Human Protein Atlas (HPA) for THNSL2 Gene
Pathways & Interactions for THNSL2 Gene
Interacting Proteins for THNSL2 Gene
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0008150 | biological_process | ND | -- |
GO:0009071 | serine family amino acid catabolic process | IEA,ISS | 17034760 |
GO:0009088 | NOT threonine biosynthetic process | IBA | -- |
GO:0010469 | regulation of receptor activity | IEA | -- |
GO:0016311 | dephosphorylation | ISS,IEA | 17034760 |
No data available for Pathways by source and SIGNOR curated interactions for THNSL2 Gene
Drugs & Compounds for THNSL2 Gene
Name | Status | Disease Links | Group | Role | Mechanism of Action | Clinical Trials |
---|---|---|---|---|---|---|
Pyridoxal Phosphate | Approved, Investigational | Nutra | 17 |
Transcripts for THNSL2 Gene
mRNA/cDNA for THNSL2 Gene
- (15) REFSEQ mRNAs :
- (10) Additional mRNA sequences :
- (140) Selected AceView cDNA sequences:
- (10) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for THNSL2 Gene
CRISPR Products
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-
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- Mammalian expression: PiggyBac
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- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- genomics-online: cdna clones - Search results for available THNSL2 gene related products
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- Applied Biological Materials Clones for THNSL2
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
ExUns: | 1a | · | 1b | · | 1c | · | 1d | ^ | 2 | ^ | 3a | · | 3b | ^ | 4a | · | 4b | · | 4c | · | 4d | ^ | 5a | · | 5b | ^ | 6a | · | 6b | · | 6c | ^ | 7 | ^ | 8a | · | 8b | ^ | 9a | · | 9b | ^ | 10a | · | 10b | ^ | 11 | ^ | 12 | ^ | 13a | · |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SP1: | - | - | - | - | - | - | ||||||||||||||||||||||||||||||||||||||||||||||
SP2: | - | - | - | |||||||||||||||||||||||||||||||||||||||||||||||||
SP3: | - | - | - | - | - | |||||||||||||||||||||||||||||||||||||||||||||||
SP4: | - | - | - | - | ||||||||||||||||||||||||||||||||||||||||||||||||
SP5: | - | - | - | - | ||||||||||||||||||||||||||||||||||||||||||||||||
SP6: | - | - | - | - | ||||||||||||||||||||||||||||||||||||||||||||||||
SP7: | - | - | ||||||||||||||||||||||||||||||||||||||||||||||||||
SP8: | - | - | - | - | - | - | - | - | ||||||||||||||||||||||||||||||||||||||||||||
SP9: | - | |||||||||||||||||||||||||||||||||||||||||||||||||||
SP10: | ||||||||||||||||||||||||||||||||||||||||||||||||||||
SP11: |
ExUns: | 13b | · | 13c | · | 13d |
---|---|---|---|---|---|
SP1: | |||||
SP2: | |||||
SP3: | |||||
SP4: | |||||
SP5: | |||||
SP6: | |||||
SP7: | |||||
SP8: | |||||
SP9: | |||||
SP10: | |||||
SP11: |
Expression for THNSL2 Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
- Lateral Plate Mesoderm (Gastrulation Derivatives)
- Paraxial Mesoderm (Gastrulation Derivatives)
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for THNSL2 Gene
NURSA nuclear receptor signaling pathways regulating expression of THNSL2 Gene:
THNSL2SOURCE GeneReport for Unigene cluster for THNSL2 Gene:
Hs.740434Evidence on tissue expression from TISSUES for THNSL2 Gene
- Blood(4.3)
- Nervous system(4.3)
- Intestine(4.2)
- Skin(4.2)
Primer Products
-
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No data available for mRNA differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for THNSL2 Gene
Orthologs for THNSL2 Gene
This gene was present in the common ancestor of animals and fungi.
Organism | Taxonomy | Gene | Similarity | Type | Details |
---|---|---|---|---|---|
chimpanzee (Pan troglodytes) |
Mammalia | THNSL2 33 34 |
|
||
dog (Canis familiaris) |
Mammalia | THNSL2 33 34 |
|
||
cow (Bos Taurus) |
Mammalia | THNSL2 33 34 |
|
||
mouse (Mus musculus) |
Mammalia | Thnsl2 33 16 34 |
|
||
rat (Rattus norvegicus) |
Mammalia | Thnsl2 33 |
|
||
platypus (Ornithorhynchus anatinus) |
Mammalia | THNSL2 34 |
|
OneToOne | |
oppossum (Monodelphis domestica) |
Mammalia | THNSL2 34 |
|
OneToOne | |
chicken (Gallus gallus) |
Aves | THNSL2 33 34 |
|
||
lizard (Anolis carolinensis) |
Reptilia | THNSL2 34 |
|
OneToOne | |
tropical clawed frog (Silurana tropicalis) |
Amphibia | thnsl2 33 |
|
||
zebrafish (Danio rerio) |
Actinopterygii | thnsl2 33 34 |
|
||
baker's yeast (Saccharomyces cerevisiae) |
Saccharomycetes | THR4 33 34 36 |
|
||
K. lactis yeast (Kluyveromyces lactis) |
Saccharomycetes | KLLA0C09020g 33 |
|
||
bread mold (Neurospora crassa) |
Ascomycetes | NCU03425 33 |
|
||
fission yeast (Schizosaccharomyces pombe) |
Schizosaccharomycetes | SPAC9E9.06c 33 |
|
||
sea squirt (Ciona savignyi) |
Ascidiacea | -- 34 |
|
OneToOne |
- Species where no ortholog for THNSL2 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
Paralogs for THNSL2 Gene
Variants for THNSL2 Gene
SNP ID | Clin | Chr 02 pos | Variation | AA Info | Type |
---|---|---|---|---|---|
rs1000041503 | -- | 88,179,591(+) | G/A | intron_variant | |
rs1000062188 | -- | 88,173,512(+) | T/C | intron_variant | |
rs1000075820 | -- | 88,179,815(+) | A/G | intron_variant | |
rs1000502816 | -- | 88,173,712(+) | A/G | intron_variant | |
rs1000732315 | -- | 88,182,122(+) | A/C | intron_variant |
Variant ID | Type | Subtype | PubMed ID |
---|---|---|---|
dgv61n16 | CNV | deletion | 17901297 |
dgv6947n54 | CNV | gain | 21841781 |
esv1550357 | CNV | insertion | 17803354 |
esv1593020 | CNV | insertion | 17803354 |
esv2518093 | CNV | insertion | 19546169 |
nsv1072005 | CNV | deletion | 25765185 |
nsv1130752 | CNV | deletion | 24896259 |
nsv1148611 | CNV | deletion | 26484159 |
nsv507021 | OTHER | sequence alteration | 20534489 |
nsv582383 | CNV | gain | 21841781 |
nsv582384 | CNV | loss | 21841781 |
nsv582386 | CNV | loss | 21841781 |
nsv834289 | CNV | gain | 17160897 |
Additional Variant Information for THNSL2 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- THNSL2
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for THNSL2 Gene
Disorders for THNSL2 Gene
Additional Disease Information for THNSL2
No disorders were found for THNSL2 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for THNSL2 Gene
Publications for THNSL2 Gene
- A novel T cell cytokine, secreted osteoclastogenic factor of activated T cells, induces osteoclast formation in a RANKL-independent manner. (PMID: 19877052) Rifas L … Weitzmann MN (Arthritis and rheumatism 2009) 2 3 4 58
- A threonine synthase homolog from a mammalian genome. (PMID: 17034760) Donini S … Peracchi A (Biochemical and biophysical research communications 2006) 2 3 58
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
- Genome-wide association studies suggest sex-specific loci associated with abdominal and visceral fat. (PMID: 26480920) Sung YJ … Bouchard C (International journal of obesity (2005) 2016) 3 58
- Expression of SOFAT by T- and B-lineage cells may contribute to bone loss. (PMID: 27035849) Jarry CR … Napimoga MH (Molecular medicine reports 2016) 3 58
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- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
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- ViGene Biosciences ready-to-package AAV shRNAs for THNSL2 gene
- Search ViGene Biosciences for THNSL2
- Santa Cruz Biotechnology (SCBT) Antibodies for THNSL2
- Search Santa Cruz Biotechnology (SCBT) for THNSL2 siRNA/shRNA
- Santa Cruz Biotechnology (SCBT) CRISPR for THNSL2
- Horizon Cell Lines for THNSL2
- genomics-online: cdna clones - Search results for available THNSL2 gene related products
- orf clones - Search results for available THNSL2 gene related products
- genomics-online: gRNA clones - Search results for available THNSL2 gene related products
- genomics-online: primer clones - Search results for available THNSL2 gene related products
- genomics-online: shRNA clones - Search results for available THNSL2 gene related products
Sources for THNSL2 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
- (45) BGMUT
- (46) HuGE
- (47) Atlas
- (48) Cell Signaling Technology
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) Cloud-Clone Corp.
- (69) OCA
- (70) Proteopedia
- (71) MOPED
- (72) neXtProt
- (73) Reactome
- (74) GeneGo (Thomson Reuters)
- (75) fRNAdb
- (76) DISEASES
- (77) SIMAP
- (78) GenomeRNAi
- (79) LifeMap
- (80) miRTarBase
- (81) MalaCards
- (82) Invitrogen
- (83) BitterDB
- (84) Vector BioLabs
- (85) ESI-BIO
- (86) RefSeq
- (87) BioSystems
- (88) MaxQB
- (89) IUPHAR
- (90) BioGPS
- (91) Illumina
- (92) COMPARTMENTS
- (93) HOMER
- (94) PaxDb
- (95) ApexBio
- (96) Addgene
- (97) antibodies-online
- (98) CYP
- (99) NONCODE
- (100) SwitchGear Genomics
- (101) TreeFam
- (102) PathCards
- (103) GeneReviews
- (104) GeneTex
- (105) Taconic Biosciences
- (106) GTEx
- (107) ProteomicsDB
- (108) SCBT
- (109) DGIdb
- (110) ClinicalTrials
- (111) FDA Approved Drugs
- (112) RVIS
- (113) SIGNOR
- (114) diseasecard
- (115) NIH Rare Diseases
- (116) Orphanet
- (117) UMLS
- (118) GTR
- (119) Disease Ontology
- (120) Genetics Home Reference
- (121) MeSH
- (122) MedlinePlus
- (123) CDC
- (124) NINDS
- (125) NCBI Bookshelf
- (126) ClinVar
- (127) Gene Damage Index
- (128) ViGene Biosciences
- (129) HPO
- (130) UDN
- (131) VISTA
- (132) FANTOM5
- (133) ENCODE
- (134) ProSci
- (135) Horizon
- (136) NURSA
- (137) IID
- (138) Cyagen
- (139) VectorBuilder
- (140) SNPedia
- (141) BRCA Exchange
- (142) St John's Lab
- (143) CIViC
- (144) ProteoGenix
- (145) dbSUPER
- (146) TISSUES
- (147) Gene ORGANizer
- (148) abm
- (149) CrownBio
- (150) Human Protein Atlas
- (151) GWAS Catalog
- (152) Monarch Initiative
- (153) DataMed
- (154) HumanCyc
- (155) genomics-online
- (156) UCNEbase
- (157) EPDnew