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Aliases & Descriptions for THBS2
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| OTTHUMP00000042899 2 | | TSP2 1, 2, 3 |
| | | Descriptions |
|---|
| thrombospondin 2 2 |
|
| | Search outside databases for aliases for THBS2 genePrevious GC identifers: GC06U990123 GC06M9S0210 |
Summaries for THBS2(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for THBS2: The protein encoded by this gene belongs to the thrombospondin family. It is a disulfide-linked homotrimeric glycoprotein that mediates cell-to-cell and cell-to-matrix interactions. This protein has been shown to function as a potent inhibitor of tumor growth and angiogenesis. Studies of the mouse counterpart suggest that this protein may modulate the cell surface properties of mesenchymal cells and be involved in cell adhesion and migration. [provided by RefSeq] UniProtKB/Swiss-Prot: TSP2_HUMAN, P35442Function: Adhesive glycoprotein that mediates cell-to-cell and cell-to-matrix interactions. Can bind to fibrinogen, fibronectin, laminin and type V collagenGene Wiki entry for THBS2 |
Genomic Location for THBS2
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the THBS2 gene 
Entrez Gene cytogenetic band: 6q27 Ensembl cytogenetic band: 6q27 HGNC cytogenetic band: 6q27THBS2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 6 GeneLoc Exon Structure GeneLoc location for GC06M169433:
(about GC identifiers)
Start:
|
169,357,800 bp from pter |
End:
|
169,396,062 bp from pter |
Size:
|
38,263 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000006.10 NT_007302.13
| Proteins for THBS2
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: TSP2_HUMAN, P35442 (See
protein sequence)Recommended Name: Thrombospondin-2 precursor Size: 1172 amino acids; 129991 Da
Subunit: Homotrimer; disulfide-linked
PDB structure from and Proteopedia :1YO8 (3D)
 2RHP (3D)
 
Secondary accessions: Q5RI52REFSEQ proteins: NP_003238.2
ENSEMBL proteins: ENSP00000355751 ENSP00000375948
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
2 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for THBS2: Assays for THBS2: | Protein
Domains/ Families for THBS2(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P35442
ProtoNet protein and cluster: P35442 5/6 Blocks protein families (see all 6
): IPB000884 Thrombospondin IPB001007 von Willebrand factor IPB001881 EGF-like calcium-binding IPB006210 Type I EGF IPB008085 Thrombospondin type 1 repeat signature
UniProtKB/Swiss-Prot: TSP2_HUMAN, P35442Similarity: Belongs to the thrombospondin familySimilarity: Contains 3 EGF-like domainsSimilarity: Contains 1 TSP C-terminal (TSPC) domainSimilarity: Contains 1 TSP N-terminal (TSPN) domainSimilarity: Contains 3 TSP type-1 domainsSimilarity: Contains 8 TSP type-3 repeatsSimilarity: Contains 1 VWFC domain | Gene Function for THBS2
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003247
Applied Biosystems Silencer® siRNAs for THBS2
Sigma-Aldrich siRNA and siRNA Panels for THBS2  Sigma-Aldrich shRNA Panels and shRNA for THBS2  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_003247                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_003247                                  untagged cDNA clone in CMV expression vector: NM_003247 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_003247
UniProtKB/Swiss-Prot: TSP2_HUMAN, P35442Function: Adhesive glycoprotein that mediates cell-to-cell and cell-to-matrix interactions. Can bind to fibrinogen, fibronectin, laminin and type V collagenGenatlas biochemistry entry for THBS2:thrombospondin II,extracellular,glycoprotein expressed in smooth muscle,fibroblast in cell adhesion molecule14 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Thbs2):
4 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for THBS2
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
Gene Network CentralTM Interacting Genes and Proteins Network for THBS2 
5/81 Interacting proteins for THBS2 (ENSP000003557513) via UniProtKB, MINT, and/or STRING (see all 81
)About this table
1 Gene Ontology (GO) biological process term (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0007155 | cell adhesion |
IEA | -- | About this table
|
Drugs & Compounds for THBS2(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for THBS2 6 Novoseek chemical compound relationships for THBS2 gene
About this table
|
Transcripts for THBS2(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003247
Sigma-Aldrich siRNA and siRNA Panels for THBS2  Sigma-Aldrich shRNA Panels and shRNA for THBS2  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_003247 REFSEQ mRNAs for THBS2 gene: NM_003247.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_003247               OriGene GFP tagged cDNA clone in CMV expression vector: NM_003247                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_003247                                  untagged cDNA clone in CMV expression vector: NM_003247  Additional cDNA sequence: AK292429.1 BC127845.1 BC146676.1 BC150175.1 BX641023.1 L12350.1 M81339.1 14 DOTS entries: DT.318423 DT.86854901 DT.97858822 DT.95261122 DT.100792529 DT.86837324 DT.97858821 DT.100792527 DT.100792528 DT.100792531 DT.121351011 DT.40224336 DT.95149447 DT.75150060 24/320 AceView cDNA sequences (see all 320
):AI753153 BU728348 CA420699 CA414667 CA431209 CB267812 C00154 AL603377 H88241 BQ940133 AA962069 AW581293 BX099356 AA344029 CN483550 BX641023 CK000113 AI580302 BU627598 AI753719 AW068385 CA446830 AI750269 CA449275
highest scoring ESTs for THBS2:L12350 AI969659 AL603377 AL703695 AA131691 AA137054 AA149811 AA149832 AA149859 AA149866 Unigene Cluster for THBS2: Thrombospondin 2 Hs.371147 [show with all ESTs]Unigene Representative Sequence: NM_003247
GeneLoc Exon Structure
5/7 Alternative Splicing Database (ASD) splice patterns (SP) for THBS2 (see all 7
)
| ExUns: | 1a | · | 1b | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5a | · | 5b | ^ | 6a | · | 6b | ^ | 7a | · | 7b | · | 7c | ^ | 8a | · | 8b | ^ | 9 | ^ | 10 | ^ | 11 | ^ | 12 | ^ | 13a | · | 13b | ^ | 14a | · | 14b | ^ | 15 | ^ | 16 | ^ | 17 | ^ | 18 | ^ | |
| SP1: | |   | |   | |   | - |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | - |   | |   | |   | - |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | - |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
| ExUns: | 19 | ^ | 20 | ^ | 21 | ^ | 22 | ^ | 23 | ^ | 24 | ^ | 25 | ^ | 26 | |
| SP1: | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for THBS2
2 Ensembl transcripts including schematic representations: ENST00000366787
ENST00000392099
|
Expression for THBS2
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| THBS2 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for THBS2
1 / 2 / 3 5 probe-sets matching THBS2 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: GCAGACTCAG
SOURCE GeneReport for Unigene cluster: Hs.371147
Expression variation in blood from EXPOLDB for THBS2 UniProtKB/Swiss-Prot: TSP2_HUMAN, P35442Tissue specificity: High expression in invertebral disk tissue |
Orthologs for THBS2
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for THBS2 gene from 5/8 species (see all 8
)
About this table Species with no ortholog for THBS2
ENSEMBL Gene Tree for THBS2 | Paralogs for THBS2(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for THBS2 gene
- THBS12
|
SNPs/Variants for THBS2(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for THBS2 (up to first 250kb)
|
Disorders & Mutations for THBS2
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 188061 disorders: 603932 UniProtKB/Swiss-Prot: TSP2_HUMAN, P35442
Genetic variations in THBS2 may be a cause of susceptibility to lumbar disk herniation (LDH) [MIM:603932]. LDH is the predominant cause of low-back pain and unilateral leg pain10/22 Novoseek disease relationships for THBS2 gene (see all 22
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| carcinoma lewis lung |
33.85 |
1 |
11929817 (1) |
| collagen fibril |
31.07 |
1 |
12781637 (1) |
| tumors |
27.34 |
56 |
18955754 (6), 10611308 (4), 11929817 (3), 11712798 (3) (see all 17) |
| carcinoma squamous cell |
23.30 |
6 |
11929817 (1), 11147670 (1), 14675207 (1), 10611308 (1) |
| melanoma |
22.54 |
9 |
12353704 (3), 19082472 (3), 11929817 (1), 9032471 (1) (see all 5) |
| glioma |
21.02 |
8 |
10448307 (4), 17919663 (1), 11132930 (1) |
| metastasis |
18.35 |
14 |
9888480 (3), 18720079 (2), 12353704 (2), 19082472 (2) (see all 5) |
| cancer |
16.22 |
3 |
11147670 (1), 18955754 (1) |
| breast carcinoma |
16.20 |
4 |
9012463 (2), 9032471 (1) |
| malignant glioma |
15.20 |
1 |
11132930 (1) |
About this table
Human Gene Mutation Database: THBS2 Genetic Association Database: THBS2 Human Genome Epidemiology Navigator: THBS2 (10 documents)
|
Medical News for THBS2(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for THBS2 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/150 PubMed articles for THBS2 gene (see all 150
):- A functional polymorphism in THBS2 that affects alternative splicing and MMP binding is associated with lumbar-disc herniation. (PubMed id 18455130)2, 3, 4 Hirose Y....Ikegawa S. (2008)
- Large scale association analysis for identification of genes underlying premature coronary heart disease: cumulative perspective from analysis of 111 candidate genes. (PubMed id 15121769)1, 3, 6 McCarthy J.J....Topol E.J. (2004)
- Thrombospondin-2 polymorphism is associated with a reduced risk of premature myocardial infarction. (PubMed id 12482844)1, 3, 6 Boekholdt S.M....Reitsma P.H. (2002)
- Disulfide connectivity of recombinant C-terminal region of human thrombospondin 2. (PubMed id 11590138)1, 3, 4 Misenheimer T.M.... Mosher D.F. (2001)
- Sequence and characterization of the complete human thrombospondin 2 cDNA: potential regulatory role for the 3' untranslated region. (PubMed id 8406456)1, 3, 4 Labell T.L. and Byers P.H. (1993)
- Thrombospondin II: partial cDNA sequence, chromosome location, and expression of a second member of the thrombospondin gene family in humans. (PubMed id 1559694)3, 4 Labell T.L.... Byers P.H. (1992)
- Microvessel density and CpG island methylation of the THBS2 gene in malignant ovarian tumors. (PubMed id 18955754)1, 3 Czekierdowski A....Kotarski J. (2008)
- Thrombospondin 2 regulates cell proliferation induced by Rac1 redox-dependent signaling. (PubMed id 12861025)1, 3 Lopes N....Kovacic H. (2003)
- Biophysical characterization of the signature domains of thrombospondin-4 and thrombospondin-2. (PubMed id 16246837)1, 3 Misenheimer T.M. and Mosher D.F. (2005)
- Loss of heterozygosity on chromosome 6q correlates with decreased thrombospondin-2 expression in human salivary gland carcinomas. (PubMed id 12824879)1, 3 Kishi M....Konishi N. (2003)
|
Search for THBS2
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing THBS2
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing THBS2
(According to HUGE)
About This Section
| -- |
Specialized Databases showing THBS2(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for THBS2(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for THBS2:

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