 |
 | Services
| |
 |
Aliases & Descriptions for THBS1
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| THBS 1, 2 | | THBS-1 1, 2 | | TSP 1, 2, 3 | | TSP-1 1, 2 | | TSP1 1, 2, 3 | | thrombospondin-1p180 2 |
| | | Descriptions |
|---|
| thrombospondin 1 2 |
|
| | Search outside databases for aliases for THBS1 genePrevious GC identifers: GC15P035240 GC15P032769 GC15P037452 GC15P037589 |
Summaries for THBS1(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for THBS1: The protein encoded by this gene is a subunit of a disulfide-linked homotrimeric protein. This protein is an adhesive glycoprotein that mediates cell-to-cell and cell-to-matrix interactions. This protein can bind to fibrinogen, fibronectin, laminin, type V collagen and integrins alpha-V/beta-1. This protein has been shown to play roles in platelet aggregation, angiogenesis, and tumorigenesis. [provided by RefSeq] UniProtKB/Swiss-Prot: TSP1_HUMAN, P07996Function: Adhesive glycoprotein that mediates cell-to-cell and cell-to-matrix interactions. Can bind to fibrinogen, fibronectin, laminin, type V collagen and integrins alpha-V/beta-1, alpha-V/beta-3 and alpha-IIb/beta-3Gene Wiki entry for THBS1 (Thrombospondin_1) |
Genomic Location for THBS1
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the THBS1 gene 
Entrez Gene cytogenetic band: 15q15 Ensembl cytogenetic band: 15q14 HGNC cytogenetic band: 15q15THBS1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 15 GeneLoc Exon Structure GeneLoc location for GC15P037660:
(about GC identifiers)
Start:
|
37,660,572 bp from pter |
End:
|
37,681,845 bp from pter |
Size:
|
21,274 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000015.8 NT_010194.16
| Proteins for THBS1
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: TSP1_HUMAN, P07996 (See
protein sequence)Recommended Name: Thrombospondin-1 precursor Size: 1170 amino acids; 129383 Da
Subunit: Homotrimer; disulfide-linked
PDB structures from and Proteopedia :1LSL (3D)
 1UX6 (3D)
 1Z78 (3D)
 1ZA4 (3D)
 2ERF (3D)
 2ES3 (3D)
 2OUH (3D)
 2OUJ (3D)
 
Secondary accessions: Q15667REFSEQ proteins: NP_003237.2
ENSEMBL proteins: ENSP00000380720 ENSP00000260356 ENSP00000380721
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
5 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for THBS1: Assays for THBS1: | Protein
Domains/ Families for THBS1(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P07996
ProtoNet protein and cluster: P07996 5/7 Blocks protein families (see all 7
): IPB000884 Thrombospondin IPB001007 von Willebrand factor IPB001881 EGF-like calcium-binding IPB003129 Thrombospondin IPB006210 Type I EGF
UniProtKB/Swiss-Prot: TSP1_HUMAN, P07996Similarity: Belongs to the thrombospondin familySimilarity: Contains 3 EGF-like domainsSimilarity: Contains 1 TSP C-terminal (TSPC) domainSimilarity: Contains 1 TSP N-terminal (TSPN) domainSimilarity: Contains 3 TSP type-1 domainsSimilarity: Contains 8 TSP type-3 repeatsSimilarity: Contains 1 VWFC domain | Gene Function for THBS1
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003246
Applied Biosystems Silencer® siRNAs for THBS1
Sigma-Aldrich siRNA for THBS1  Sigma-Aldrich shRNA Panels and shRNA for THBS1  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_003246                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_003246                                  untagged cDNA clone in CMV expression vector: NM_003246 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_003246
UniProtKB/Swiss-Prot: TSP1_HUMAN, P07996Function: Adhesive glycoprotein that mediates cell-to-cell and cell-to-matrix interactions. Can bind to fibrinogen, fibronectin, laminin, type V collagen and integrins alpha-V/beta-1, alpha-V/beta-3 and alpha-IIb/beta-3Genatlas biochemistry entry for THBS1:thrombospondin I (140kDa),glycoprotein expressed in extracellular matrix protein involved in platelet aggregation,embryogenesis,morphogenesis,cell adhesion molecule,major activator of TGFB115/18 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Thbs1) (see all 18
):
5/14 Gene Ontology (GO) molecular function terms (links to tree view) (see all 14
): About this table | Pathways & Interactions for THBS1
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
2 Sigma-Aldrich "Your Favorite Gene" Pathways for THBS1 (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for THBS1 
5/152 Interacting proteins for THBS1 (P079962 ENSP000002603563) via UniProtKB, MINT, and/or STRING (see all 152
)About this table
5/40 Gene Ontology (GO) biological process terms (links to tree view) (see all 40
): About this table
|
Drugs & Compounds for THBS1(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for THBS1 10/51 Novoseek chemical compound relationships for THBS1 gene (see all 51
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| grgdsp |
61.55 |
7 |
9362073 (1), 7695484 (1), 7519904 (1), 9351379 (1) (see all 6) |
| grgesp |
48.01 |
3 |
9351379 (1), 7737404 (1) |
| tgf beta1 |
44.58 |
22 |
11955611 (5), 16100902 (4), 15347840 (3), 14583181 (2) (see all 7) |
| fibrinogen |
44.21 |
81 |
11094060 (8), 1309961 (3), 7693024 (3), 7947604 (2) (see all 28) |
| matrigel |
43.63 |
3 |
17704650 (1), 9489491 (1), 19158196 (1), 10398144 (1) |
| procollagen |
38.29 |
8 |
11016937 (3), 1426766 (2), 11691800 (1), 10391381 (1) |
| lm 609 |
36.97 |
1 |
1384794 (1) |
| heparan sulfate |
24.62 |
23 |
14517432 (3), 9989246 (2), 9328841 (1), 15868907 (1) (see all 6) |
| sulfatide |
22.55 |
2 |
18226512 (1), 8375932 (1) |
| aminosugars |
22.35 |
2 |
9127003 (1) |
About this table
|
Transcripts for THBS1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003246
Sigma-Aldrich siRNA for THBS1  Sigma-Aldrich shRNA Panels and shRNA for THBS1  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_003246 REFSEQ mRNAs for THBS1 gene: NM_003246.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_003246               OriGene GFP tagged cDNA clone in CMV expression vector: NM_003246                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_003246                                  untagged cDNA clone in CMV expression vector: NM_003246  Additional cDNA sequence: AB209912.1 AK291639.1 AK293230.1 AK304754.1 AK309613.1 AK310820.1 BC015134.1 BC028145.1 BC136469.1 BC136470.1 M14326.1 M25631.1 M99425.1 X04665.1 X14787.1 24/33 DOTS entries (see all 33
): DT.95317311 DT.451114 DT.100877416 DT.110480 DT.100877417 DT.100823315 DT.70104615 DT.121037763 DT.91873884 DT.91765697 DT.86836637 DT.92050749 DT.121037716 DT.121037756 DT.121037762 DT.100823317 DT.40244713 DT.92009463 DT.95371378 DT.91765704 DT.97803063 DT.121037724 DT.121037736 DT.121037766 24/563 AceView cDNA sequences (see all 563
):BX951694 X04665 BQ001338 AW997017 AL703372 AA232790 BX501555 CA411820 BQ019617 BF001661 AA373735 AL706182 CA952741 AI750877 AW629780 BP363450 BX504657 N39897 NM_003246 BG251073 CN482761 BI907705 AV660617 AV656566
highest scoring ESTs for THBS1:X14787 AA007557 AA027235 AA037609 AA056491 AA080998 AA080999 AA081394 AA225986 AA308199 Unigene Cluster for THBS1: Thrombospondin 1 Hs.164226 [show with all ESTs]Unigene Representative Sequence: NM_003246
GeneLoc Exon Structure
5/6 Alternative Splicing Database (ASD) splice patterns (SP) for THBS1 (see all 6
)
| ExUns: | 1a | · | 1b | ^ | 2a | · | 2b | ^ | 3a | · | 3b | ^ | 4 | ^ | 5 | ^ | 6 | ^ | 7 | ^ | 8a | · | 8b | · | 8c | ^ | 9a | · | 9b | ^ | 10a | · | 10b | ^ | 11 | ^ | 12 | ^ | 13 | ^ | 14 | ^ | 15a | · | 15b | ^ | 16 | ^ | 17 | ^ | 18a | · | |
| SP1: | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
| ExUns: | 18b | ^ | 19a | · | 19b | ^ | 20 | ^ | 21 | ^ | 22 | |
| SP1: | |   | |   | - |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for THBS1
3 Ensembl transcripts including schematic representations: ENST00000397591
ENST00000260356
ENST00000397593
|
Expression for THBS1
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| THBS1 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for THBS1
1 / 2 / 3 11 probe-sets matching THBS1 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: AGGTCTTCAA
SOURCE GeneReport for Unigene cluster: Hs.164226
Expression variation in blood from EXPOLDB for THBS1 |
Orthologs for THBS1
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for THBS1 gene from 5/9 species (see all 9
)
About this table Species with no ortholog for THBS1
ENSEMBL Gene Tree for THBS1 | Paralogs for THBS1(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for THBS1 gene
- THBS22
|
SNPs/Variants for THBS1(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for THBS1 (up to first 250kb)
|
Disorders & Mutations for THBS1
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 188060
10/97 Novoseek disease relationships for THBS1 gene (see all 97
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| purpura thrombotic thrombocytopenic |
65.94 |
8 |
17367414 (1), 16204318 (1), 16831327 (1), 15890682 (1) (see all 8) |
| neovascularization |
65.56 |
32 |
19080117 (5), 19024308 (2), 8780385 (1), 12719977 (1) (see all 19) |
| tumors |
61.43 |
666 |
9017002 (10), 10375104 (8), 11712798 (7), 8093068 (6) (see all 99) |
| metastasis |
50.27 |
105 |
17709727 (3), 10427124 (3), 12429967 (3), 7527299 (3) (see all 53) |
| skin carcinoma |
49.72 |
3 |
9833775 (1), 10051595 (1), 9365532 (1) |
| cancer |
46.11 |
130 |
9600434 (4), 10650779 (3), 10427124 (3), 16204059 (3) (see all 67) |
| blood vessel tumors |
42.51 |
1 |
10595934 (1) |
| cancer invasiveness |
40.46 |
2 |
16732887 (1) |
| melanoma |
39.40 |
70 |
12447621 (6), 7599038 (4), 9679984 (4), 9618039 (3) (see all 28) |
| breast carcinoma |
38.73 |
28 |
10196234 (3), 7527299 (3), 9012463 (2), 15838828 (2) (see all 15) |
About this table
Human Gene Mutation Database: THBS1 Genetic Association Database: THBS1 Human Genome Epidemiology Navigator: THBS1 (13 documents)
|
Medical News for THBS1(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for THBS1 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/944 PubMed articles for THBS1 gene (see all 944
):- Genetic association analysis of myocardial infarction with thrombospondin-1 N700S variant in a Chinese population. (PubMed id 15140581)1, 3, 6 Zhou X....Gu D. (2004)
- [Correlation of thrombospondin-1 G1678A polymorphism to stroke: a study in Chinese population] (PubMed id 15730804)1, 3, 6 Liu X.N....Hui R.T. (2004)
- Biophysical characterization, including disulfide bond assignments, of the anti-angiogenic type 1 domains of human thrombospondin-1. (PubMed id 12450399)1, 3, 4 Huwiler K.G.... Mosher D.F. (2002)
- Structure and chromosomal localization of the human thrombospondin gene. (PubMed id 2341158)1, 2, 3 Wolf F.W....Dixit V.M. (1990)
- Elucidation of N-glycosylation sites on human platelet proteins: a glycoproteomic approach. (PubMed id 16263699)3, 4 Lewandrowski U.... Sickmann A. (2006)
- Identification of N-linked glycoproteins in human saliva by glycoprotein capture and mass spectrometry. (PubMed id 16740002)3, 4 Ramachandran P....Loo J.A. (2006)
- Human plasma N-glycoproteome analysis by immunoaffinity subtraction, hydrazide chemistry, and mass spectrometry. (PubMed id 16335952)3, 4 Liu T.... Smith R.D. (2005)
- Evidence for substantial effect modification by gender in a large-scale genetic association study of the metabolic syndrome among coronary heart disease patients. (PubMed id 14557872)3, 6 McCarthy J.J....Topol E.J. (2003)
- Thrombospondin-2 polymorphism is associated with a reduced risk of premature myocardial infarction. (PubMed id 12482844)3, 6 Boekholdt S.M....Reitsma P.H. (2002)
- C-mannosylation and O-fucosylation of the thrombospondin type 1 module. (PubMed id 11067851)3, 4 Hofsteenge J.... Peter-Katalinic J. (2001)
|
Search for THBS1
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing THBS1
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing THBS1
(According to HUGE)
About This Section
| -- |
Specialized Databases showing THBS1(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for THBS1(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for THBS1:

 | |
 | | | | |
|
 |  |  |
| | | | Search Tocris compounds for THBS1 |
|
 |
 | | | |
GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009
|