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Aliases for THAP9-AS1 Gene

Subcategory (RNA class) for THAP9-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for THAP9-AS1 Gene

  • THAP9 Antisense RNA 1 2 3 5
  • THAP9 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for THAP9-AS1 Gene

Previous GeneCards Identifiers for THAP9-AS1 Gene

  • GC04M083816

Summaries for THAP9-AS1 Gene

GeneCards Summary for THAP9-AS1 Gene

THAP9-AS1 (THAP9 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for THAP9-AS1 Gene

Genomics for THAP9-AS1 Gene

Regulatory Elements for THAP9-AS1 Gene

Enhancers for THAP9-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04G082898 1.4 ENCODE dbSUPER 49.3 +0.5 547 4.6 HDGF PKNOX1 CREB3L1 ARNT WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 THAP9-AS1 THAP9 GC04P082899
GH04G082988 1 Ensembl ENCODE 50 -88.3 -88279 2.3 ZNF146 IRF2 TBL1XR1 WRNIP1 ARID4B DMAP1 FOS NFE2 ZNF652 MAZ THAP9-AS1 ENSG00000199530 RNU6-615P GC04P082953
GH04G083009 1.2 ENCODE 39.4 -110.9 -110857 5.3 MLX AGO1 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC TBX21 THAP9-AS1 LIN54 RNU6-615P
GH04G082796 1.2 ENCODE dbSUPER 33.7 +103.0 103033 3.2 FEZF1 GLIS2 FOS ZNF263 SP3 ZNF662 ZNF491 ZSCAN16 GLIS1 ZNF624 THAP9-AS1 LOC101928963 SCD5 ENSG00000270842
GH04G082888 1.4 ENCODE dbSUPER 24.1 +9.9 9888 4.9 HDGF PKNOX1 MLX CREB3L1 ARNT AGO1 ARID4B SIN3A DMAP1 ZNF2 THAP9-AS1 MRPS18C GC04P082899 GC04M082849
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around THAP9-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for THAP9-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

Genomic Location for THAP9-AS1 Gene

82,893,009 bp from pter
82,900,960 bp from pter
7,952 bases
Minus strand

Genomic View for THAP9-AS1 Gene

Genes around THAP9-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
THAP9-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for THAP9-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for THAP9-AS1 Gene

Proteins for THAP9-AS1 Gene

Post-translational modifications for THAP9-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for THAP9-AS1 Gene

Domains & Families for THAP9-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for THAP9-AS1 Gene

Function for THAP9-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for THAP9-AS1 Gene

Localization for THAP9-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for THAP9-AS1 Gene

Pathways & Interactions for THAP9-AS1 Gene

SuperPathways for THAP9-AS1 Gene

No Data Available

Interacting Proteins for THAP9-AS1 Gene

Gene Ontology (GO) - Biological Process for THAP9-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for THAP9-AS1 Gene

Drugs & Compounds for THAP9-AS1 Gene

No Compound Related Data Available

Transcripts for THAP9-AS1 Gene

mRNA/cDNA for THAP9-AS1 Gene

(6) Additional mRNA sequences :
(12) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for THAP9-AS1 Gene

THAP9 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for THAP9-AS1 Gene

No ASD Table

Relevant External Links for THAP9-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for THAP9-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for THAP9-AS1 Gene

SOURCE GeneReport for Unigene cluster for THAP9-AS1 Gene:

genes like me logo Genes that share expression patterns with THAP9-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for THAP9-AS1 Gene

Orthologs for THAP9-AS1 Gene

Evolution for THAP9-AS1 Gene

Gene Tree for THAP9-AS1 (if available)
Gene Tree for THAP9-AS1 (if available)

No data available for Orthologs for THAP9-AS1 Gene

Paralogs for THAP9-AS1 Gene

No data available for Paralogs for THAP9-AS1 Gene

Variants for THAP9-AS1 Gene

Sequence variations from dbSNP and Humsavar for THAP9-AS1 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs1000019032 -- 82,900,290(+) CTCTG(C/T)CTTCA intron-variant, upstream-variant-2KB
rs1000154176 -- 82,899,867(+) TAAGG(A/C)TCTCC intron-variant, upstream-variant-2KB
rs1000268128 -- 82,893,711(+) ATTCA(-/AGG)AGACT intron-variant, nc-transcript-variant
rs1000424435 -- 82,897,477(+) ATTAT(A/G)AGAAA intron-variant, upstream-variant-2KB
rs1000815276 -- 82,895,706(+) TAAAT(A/C)TTCAA intron-variant, nc-transcript-variant, downstream-variant-500B

Relevant External Links for THAP9-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for THAP9-AS1 Gene

Disorders for THAP9-AS1 Gene

Relevant External Links for THAP9-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for THAP9-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for THAP9-AS1 Gene

Publications for THAP9-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh J.H. … Kim N.S. (Mamm. Genome 2005) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
  4. Regional localization of 10 mariner transposon-like ESTs by means of FISH--evidence for a correlation with fragile sites. (PMID: 11309667) Liehr T. … Rautenstrauss B. (Mamm. Genome 2001) 3 64
  5. Molecular evolution of the second ancient human mariner transposon, Hsmar2, illustrates patterns of neutral evolution in the human genome lineage. (PMID: 9461396) Robertson H.M. … Martos R. (Gene 1997) 3 64

Products for THAP9-AS1 Gene

Sources for THAP9-AS1 Gene

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