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Aliases for THAP9-AS1 Gene

Subcategory (RNA class) for THAP9-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for THAP9-AS1 Gene

  • THAP9 Antisense RNA 1 2 3 5
  • THAP9 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for THAP9-AS1 Gene

Previous GeneCards Identifiers for THAP9-AS1 Gene

  • GC04M083816

Summaries for THAP9-AS1 Gene

GeneCards Summary for THAP9-AS1 Gene

THAP9-AS1 (THAP9 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for THAP9-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for THAP9-AS1 Gene

Genomics for THAP9-AS1 Gene

Regulatory Elements for THAP9-AS1 Gene

Enhancers for THAP9-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04H082898 1.4 ENCODE dbSUPER 49.3 +0.5 547 4 HDGF PKNOX1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF766 THAP9-AS1 HNRNPD HELQ ABRAXAS1 THAP9 GC04P082899
GH04H083009 1.2 ENCODE 49.7 -110.9 -110857 5 HDGF PKNOX1 FOXA2 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 THAP9-AS1 HNRNPD HELQ SEC31A HNRNPDL ABRAXAS1 LOC101928963 LIN54 RNU6-615P
GH04H082796 1.2 ENCODE dbSUPER 42.3 +103.0 103033 3 FEZF1 GLIS2 SP3 ZNF662 ZNF491 ZSCAN16 GLIS1 ZNF624 ZNF300 ZNF112 HNRNPDL THAP9-AS1 LOC101928963 HNRNPD SEC31A SCD5 ENSG00000270842
GH04H082888 1.4 ENCODE dbSUPER 34.5 +9.9 9888 4 HDGF PKNOX1 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 THAP9-AS1 HNRNPD HNRNPDL LOC101928963 MRPS18C GC04P082899 GC04M082849
GH04H082988 0.9 Ensembl ENCODE 50 -88.3 -88279 2 ZNF146 IRF2 MAZ TBL1XR1 CBFB NR2F1 MAX ARID4B DMAP1 JUND THAP9-AS1 ENSG00000199530 RNU6-615P GC04P082953
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around THAP9-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for THAP9-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000170044 860 3801 HDGF PKNOX1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF766

Genomic Location for THAP9-AS1 Gene

Chromosome:
4
Start:
82,893,009 bp from pter
End:
82,900,960 bp from pter
Size:
7,952 bases
Orientation:
Minus strand

Genomic View for THAP9-AS1 Gene

Genes around THAP9-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
THAP9-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for THAP9-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for THAP9-AS1 Gene

Proteins for THAP9-AS1 Gene

Post-translational modifications for THAP9-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for THAP9-AS1 Gene

Domains & Families for THAP9-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for THAP9-AS1 Gene

Function for THAP9-AS1 Gene

Phenotypes From GWAS Catalog for THAP9-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for THAP9-AS1 Gene

Localization for THAP9-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for THAP9-AS1 Gene

Pathways & Interactions for THAP9-AS1 Gene

SuperPathways for THAP9-AS1 Gene

No Data Available

Interacting Proteins for THAP9-AS1 Gene

Gene Ontology (GO) - Biological Process for THAP9-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for THAP9-AS1 Gene

Drugs & Compounds for THAP9-AS1 Gene

No Compound Related Data Available

Transcripts for THAP9-AS1 Gene

mRNA/cDNA for THAP9-AS1 Gene

(6) Additional mRNA sequences :
(12) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for THAP9-AS1 Gene

THAP9 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for THAP9-AS1 Gene

No ASD Table

Relevant External Links for THAP9-AS1 Gene

GeneLoc Exon Structure for
THAP9-AS1
ECgene alternative splicing isoforms for
THAP9-AS1

Expression for THAP9-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for THAP9-AS1 Gene

SOURCE GeneReport for Unigene cluster for THAP9-AS1 Gene:

Hs.728916
genes like me logo Genes that share expression patterns with THAP9-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for THAP9-AS1 Gene

Orthologs for THAP9-AS1 Gene

Evolution for THAP9-AS1 Gene

ENSEMBL:
Gene Tree for THAP9-AS1 (if available)
TreeFam:
Gene Tree for THAP9-AS1 (if available)

No data available for Orthologs for THAP9-AS1 Gene

Paralogs for THAP9-AS1 Gene

No data available for Paralogs for THAP9-AS1 Gene

Variants for THAP9-AS1 Gene

Sequence variations from dbSNP and Humsavar for THAP9-AS1 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs1000019032 -- 82,900,290(+) CTCTG(C/T)CTTCA intron-variant, upstream-variant-2KB
rs1000154176 -- 82,899,867(+) TAAGG(A/C)TCTCC intron-variant, upstream-variant-2KB
rs1000268128 -- 82,893,711(+) ATTCA(-/AGG)AGACT intron-variant, nc-transcript-variant
rs1000424435 -- 82,897,477(+) ATTAT(A/G)AGAAA intron-variant, upstream-variant-2KB
rs1000815276 -- 82,895,706(+) TAAAT(A/C)TTCAA intron-variant, nc-transcript-variant, downstream-variant-500B

Relevant External Links for THAP9-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
THAP9-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for THAP9-AS1 Gene

Disorders for THAP9-AS1 Gene

Relevant External Links for THAP9-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
THAP9-AS1

No disorders were found for THAP9-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for THAP9-AS1 Gene

Publications for THAP9-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60
  2. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh JH … Kim NS (Mammalian genome : official journal of the International Mammalian Genome Society 2005) 3 60
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60
  4. Regional localization of 10 mariner transposon-like ESTs by means of FISH--evidence for a correlation with fragile sites. (PMID: 11309667) Liehr T … Rautenstrauss B (Mammalian genome : official journal of the International Mammalian Genome Society 2001) 3 60
  5. Molecular evolution of the second ancient human mariner transposon, Hsmar2, illustrates patterns of neutral evolution in the human genome lineage. (PMID: 9461396) Robertson HM … Martos R (Gene 1997) 3 60

Products for THAP9-AS1 Gene

Sources for THAP9-AS1 Gene

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