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Aliases for THAP9-AS1 Gene

Subcategory (RNA class) for THAP9-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for THAP9-AS1 Gene

  • THAP9 Antisense RNA 1 2 3 5
  • THAP9 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for THAP9-AS1 Gene

Previous GeneCards Identifiers for THAP9-AS1 Gene

  • GC04M083816

Summaries for THAP9-AS1 Gene

GeneCards Summary for THAP9-AS1 Gene

THAP9-AS1 (THAP9 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for THAP9-AS1 Gene

Genomics for THAP9-AS1 Gene

Regulatory Elements for THAP9-AS1 Gene

Enhancers for THAP9-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04F082988 0.7 Ensembl ENCODE 50 -88.3 -88279 2.3 MAZ ZNF146 TBL1XR1 MTA2 WRNIP1 CBFB ARID4B DMAP1 JUND PBX2 THAP9-AS1 ENSG00000199530 RNU6-615P GC04P082953
GH04F082898 0.4 ENCODE 49.3 +0.5 547 4.6 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 THAP9-AS1 HELQ FAM175A THAP9 GC04P082899
GH04F083022 1.4 FANTOM5 Ensembl 46.3 -121.9 -121942 1.0 THAP9-AS1 THAP9 HPSE PLAC8 COQ2 HELQ LIN54 COPS4
GH04F083009 0.8 ENCODE 39.4 -110.9 -110857 5.3 HDGF PKNOX1 MLX WRNIP1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 THAP9-AS1 HELQ FAM175A LIN54 RNU6-615P
GH04F082888 0.2 ENCODE 24.1 +9.9 9888 4.9 HDGF PKNOX1 CREB3L1 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 THAP9-AS1 MRPS18C GC04P082899 GC04M082849
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around THAP9-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for THAP9-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001244276 1060 4201 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1

Genomic Location for THAP9-AS1 Gene

Chromosome:
4
Start:
82,893,009 bp from pter
End:
82,900,960 bp from pter
Size:
7,952 bases
Orientation:
Minus strand

Genomic View for THAP9-AS1 Gene

Genes around THAP9-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
THAP9-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for THAP9-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for THAP9-AS1 Gene

Proteins for THAP9-AS1 Gene

Post-translational modifications for THAP9-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for THAP9-AS1 Gene

Domains & Families for THAP9-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for THAP9-AS1 Gene

Function for THAP9-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for THAP9-AS1 Gene

Localization for THAP9-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for THAP9-AS1 Gene

Pathways & Interactions for THAP9-AS1 Gene

SuperPathways for THAP9-AS1 Gene

No Data Available

Interacting Proteins for THAP9-AS1 Gene

Gene Ontology (GO) - Biological Process for THAP9-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for THAP9-AS1 Gene

Transcripts for THAP9-AS1 Gene

mRNA/cDNA for THAP9-AS1 Gene

(6) Additional mRNA sequences :
(12) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for THAP9-AS1 Gene

THAP9 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for THAP9-AS1 Gene

No ASD Table

Relevant External Links for THAP9-AS1 Gene

GeneLoc Exon Structure for
THAP9-AS1
ECgene alternative splicing isoforms for
THAP9-AS1

Expression for THAP9-AS1 Gene

mRNA expression in normal human tissues for THAP9-AS1 Gene

SOURCE GeneReport for Unigene cluster for THAP9-AS1 Gene:

Hs.728916
genes like me logo Genes that share expression patterns with THAP9-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for THAP9-AS1 Gene

Orthologs for THAP9-AS1 Gene

Evolution for THAP9-AS1 Gene

ENSEMBL:
Gene Tree for THAP9-AS1 (if available)
TreeFam:
Gene Tree for THAP9-AS1 (if available)

No data available for Orthologs for THAP9-AS1 Gene

Paralogs for THAP9-AS1 Gene

No data available for Paralogs for THAP9-AS1 Gene

Variants for THAP9-AS1 Gene

Sequence variations from dbSNP and Humsavar for THAP9-AS1 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs1020749 -- 82,893,165(+) CAGGG(C/T)GCAAG intron-variant, upstream-variant-2KB
rs1031640 -- 82,896,540(+) CTATA(C/T)ACTAT intron-variant, upstream-variant-2KB
rs111252147 -- 82,895,572(+) GTAAG(C/G)AAAAG intron-variant, downstream-variant-500B
rs112316619 -- 82,902,463(+) CTCAG(A/G)TGTCC intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs112887874 -- 82,899,588(+) TTTCC(A/G)AAGTT intron-variant, upstream-variant-2KB

Relevant External Links for THAP9-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
THAP9-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for THAP9-AS1 Gene

Disorders for THAP9-AS1 Gene

Relevant External Links for THAP9-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
THAP9-AS1

No disorders were found for THAP9-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for THAP9-AS1 Gene

Publications for THAP9-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh J.H. … Kim N.S. (Mamm. Genome 2005) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
  4. Regional localization of 10 mariner transposon-like ESTs by means of FISH--evidence for a correlation with fragile sites. (PMID: 11309667) Liehr T. … Rautenstrauss B. (Mamm. Genome 2001) 3 64
  5. Molecular evolution of the second ancient human mariner transposon, Hsmar2, illustrates patterns of neutral evolution in the human genome lineage. (PMID: 9461396) Robertson H.M. … Martos R. (Gene 1997) 3 64

Products for THAP9-AS1 Gene

Sources for THAP9-AS1 Gene

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