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Aliases for THAP9-AS1 Gene

Subcategory (RNA class) for THAP9-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for THAP9-AS1 Gene

  • THAP9 Antisense RNA 1 2 3 5
  • THAP9 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for THAP9-AS1 Gene

Previous GeneCards Identifiers for THAP9-AS1 Gene

  • GC04M083816

Summaries for THAP9-AS1 Gene

GeneCards Summary for THAP9-AS1 Gene

THAP9-AS1 (THAP9 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for THAP9-AS1 Gene

Genomics for THAP9-AS1 Gene

Regulatory Elements for THAP9-AS1 Gene

Enhancers for THAP9-AS1 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around THAP9-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for THAP9-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around THAP9-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for THAP9-AS1 Gene

Chromosome:
4
Start:
82,893,009 bp from pter
End:
82,900,960 bp from pter
Size:
7,952 bases
Orientation:
Minus strand

Genomic View for THAP9-AS1 Gene

Genes around THAP9-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
THAP9-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for THAP9-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for THAP9-AS1 Gene

Proteins for THAP9-AS1 Gene

Post-translational modifications for THAP9-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for THAP9-AS1 Gene

Domains & Families for THAP9-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for THAP9-AS1 Gene

Function for THAP9-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for THAP9-AS1 Gene

Localization for THAP9-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for THAP9-AS1 Gene

Pathways & Interactions for THAP9-AS1 Gene

SuperPathways for THAP9-AS1 Gene

No Data Available

Interacting Proteins for THAP9-AS1 Gene

Gene Ontology (GO) - Biological Process for THAP9-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for THAP9-AS1 Gene

Drugs & Compounds for THAP9-AS1 Gene

No Compound Related Data Available

Transcripts for THAP9-AS1 Gene

mRNA/cDNA for THAP9-AS1 Gene

(6) Additional mRNA sequences :
(12) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for THAP9-AS1 Gene

THAP9 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for THAP9-AS1 Gene

No ASD Table

Relevant External Links for THAP9-AS1 Gene

GeneLoc Exon Structure for
THAP9-AS1
ECgene alternative splicing isoforms for
THAP9-AS1

Expression for THAP9-AS1 Gene

mRNA expression in normal human tissues for THAP9-AS1 Gene

SOURCE GeneReport for Unigene cluster for THAP9-AS1 Gene Hs.728916

genes like me logo Genes that share expression patterns with THAP9-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for THAP9-AS1 Gene

Orthologs for THAP9-AS1 Gene

Evolution for THAP9-AS1 Gene

ENSEMBL:
Gene Tree for THAP9-AS1 (if available)
TreeFam:
Gene Tree for THAP9-AS1 (if available)

No data available for Orthologs for THAP9-AS1 Gene

Paralogs for THAP9-AS1 Gene

No data available for Paralogs for THAP9-AS1 Gene

Variants for THAP9-AS1 Gene

Sequence variations from dbSNP and Humsavar for THAP9-AS1 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs7082 -- 82,893,670(-) TGACT(A/G)CTCAT nc-transcript-variant
rs1031640 -- 82,896,540(+) CTATA(C/T)ACTAT intron-variant
rs1350386 -- 82,898,311(+) AAAAG(C/T)ATAGA intron-variant
rs1563647 -- 82,895,079(+) AACAG(A/T)TCCTT intron-variant
rs3947914 -- 82,894,365(+) tccca(C/T)ttatt nc-transcript-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for THAP9-AS1 Gene

Disorders for THAP9-AS1 Gene

Relevant External Links for THAP9-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
THAP9-AS1

No disorders were found for THAP9-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for THAP9-AS1 Gene

Publications for THAP9-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 67
  2. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh J.H. … Kim N.S. (Mamm. Genome 2005) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  4. Regional localization of 10 mariner transposon-like ESTs by means of FISH--evidence for a correlation with fragile sites. (PMID: 11309667) Liehr T. … Rautenstrauss B. (Mamm. Genome 2001) 3
  5. Molecular evolution of the second ancient human mariner transposon, Hsmar2, illustrates patterns of neutral evolution in the human genome lineage. (PMID: 9461396) Robertson H.M. … Martos R. (Gene 1997) 3

Products for THAP9-AS1 Gene

Sources for THAP9-AS1 Gene

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