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Aliases for THAP9-AS1 Gene

Subcategory (RNA class) for THAP9-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for THAP9-AS1 Gene

  • THAP9 Antisense RNA 1 2 3
  • THAP9 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for THAP9-AS1 Gene

Previous GeneCards Identifiers for THAP9-AS1 Gene

  • GC04M083816

Summaries for THAP9-AS1 Gene

GeneCards Summary for THAP9-AS1 Gene

THAP9-AS1 (THAP9 Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for THAP9-AS1 Gene

Genomics for THAP9-AS1 Gene

Genomic Location for THAP9-AS1 Gene

Start:
82,893,009 bp from pter
End:
82,900,960 bp from pter
Size:
7,952 bases
Orientation:
Minus strand

Genomic View for THAP9-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for THAP9-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for THAP9-AS1 Gene

No data available for Regulatory Elements for THAP9-AS1 Gene

Proteins for THAP9-AS1 Gene

Post-translational modifications for THAP9-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for THAP9-AS1 Gene

Domains for THAP9-AS1 Gene

Gene Families for THAP9-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with THAP9-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for THAP9-AS1 Gene

Function for THAP9-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for THAP9-AS1 Gene

Localization for THAP9-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for THAP9-AS1 Gene

Pathways for THAP9-AS1 Gene

SuperPathways for THAP9-AS1 Gene

No Data Available

Interacting Proteins for THAP9-AS1 Gene

Gene Ontology (GO) - Biological Process for THAP9-AS1 Gene

None

No data available for Pathways by source for THAP9-AS1 Gene

Transcripts for THAP9-AS1 Gene

mRNA/cDNA for THAP9-AS1 Gene

(6) Additional mRNA sequences :
(13) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for THAP9-AS1 Gene

THAP9 antisense RNA 1:
Representative Sequences:

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate THAP9-AS1
    • Block miRNA regulation of THAP9-AS1 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for THAP9-AS1

    Primer Products

    Flow Cytometry Products

    Alternative Splicing Database (ASD) splice patterns (SP) for THAP9-AS1 Gene

    No ASD Table

    Relevant External Links for THAP9-AS1 Gene

    GeneLoc Exon Structure for
    THAP9-AS1
    ECgene alternative splicing isoforms for
    THAP9-AS1

    Expression for THAP9-AS1 Gene

    mRNA expression in normal human tissues for THAP9-AS1 Gene

    SOURCE GeneReport for Unigene cluster for THAP9-AS1 Gene Hs.728916

    genes like me logo Genes that share expressions with THAP9-AS1: view

    In Situ Assay Products

    No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for THAP9-AS1 Gene

    Orthologs for THAP9-AS1 Gene

    Evolution for THAP9-AS1 Gene

    ENSEMBL:
    Gene Tree for THAP9-AS1 (if available)
    TreeFam:
    Gene Tree for THAP9-AS1 (if available)

    No data available for Orthologs for THAP9-AS1 Gene

    Paralogs for THAP9-AS1 Gene

    No data available for Paralogs for THAP9-AS1 Gene

    Variants for THAP9-AS1 Gene

    Sequence variations from dbSNP and Humsavar for THAP9-AS1 Gene

    SNP ID Clin Chr 04 pos Sequence Context AA Info Type MAF
    rs7082 -- 82,893,670(-) TGACT(A/G)CTCAT nc-transcript-variant
    rs1031640 -- 82,896,540(+) CTATA(C/T)ACTAT intron-variant
    rs1350386 -- 82,898,311(+) AAAAG(C/T)ATAGA intron-variant
    rs1563647 -- 82,895,079(+) AACAG(A/T)TCCTT intron-variant
    rs3947914 -- 82,894,365(+) tccca(C/T)ttatt nc-transcript-variant

    Relevant External Links for THAP9-AS1 Gene

    HapMap Linkage Disequilibrium report
    THAP9-AS1

    No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for THAP9-AS1 Gene

    Disorders for THAP9-AS1 Gene

    No disorders were found for THAP9-AS1 Gene.

    No data available for UniProtKB/Swiss-Prot for THAP9-AS1 Gene

    Publications for THAP9-AS1 Gene

    1. Molecular evolution of the second ancient human mariner transposon, Hsmar2, illustrates patterns of neutral evolution in the human genome lineage. (PMID: 9461396) Robertson H.M. … Martos R. (Gene 1997) 3
    2. Regional localization of 10 mariner transposon-like ESTs by means of FISH--evidence for a correlation with fragile sites. (PMID: 11309667) Liehr T. … Rautenstrauss B. (Mamm. Genome 2001) 3
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
    4. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh J.H. … Kim N.S. (Mamm. Genome 2005) 3
    5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

    Products for THAP9-AS1 Gene

    Sources for THAP9-AS1 Gene

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