Free for academic non-profit institutions. Other users need a Commercial license

Aliases for THAP7-AS1 Gene

Subcategory (RNA class) for THAP7-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for THAP7-AS1 Gene

  • THAP7 Antisense RNA 1 2 3 5
  • THAP7 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for THAP7-AS1 Gene

Previous GeneCards Identifiers for THAP7-AS1 Gene

  • GC22P021358
  • GC22P021448

Summaries for THAP7-AS1 Gene

GeneCards Summary for THAP7-AS1 Gene

THAP7-AS1 (THAP7 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for THAP7-AS1 Gene

Genomics for THAP7-AS1 Gene

Regulatory Elements for THAP7-AS1 Gene

Enhancers for THAP7-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22F021000 1.1 ENCODE 71.5 +0.2 198 4.5 HDGF PKNOX1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 THAP7-AS1 TUBA3GP LOC100420177 ENSG00000234503 E2F6P3 POM121L8P BCRP6 LOC105372938 ENSG00000235578 LZTR1
GH22F020548 1.7 FANTOM5 Ensembl ENCODE 32.4 -448.2 -448197 11.0 HDGF PKNOX1 ARNT CREB3L1 MLX SIN3A ARID4B FEZF1 YBX1 YY1 THAP7-AS1 SCARF2 MED15 LOC100420177 THAP7 PI4KA LOC105372938 ABHD17AP4 KLHL22 DGCR8
GH22F020978 1.2 ENCODE 45.5 -20.3 -20322 5.3 HDGF PKNOX1 ARNT CREB3L1 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 THAP7-AS1 LOC100420177 THAP7 LZTR1 SCARF2 ENSG00000273342 ABHD17AP4 ENSG00000273343 DGCR8 PI4KA
GH22F020494 1.5 FANTOM5 ENCODE 31.3 -506.0 -506043 2.7 CREB3L1 FEZF1 YBX1 SLC30A9 ZNF416 ZNF143 ZNF548 ZNF263 SP3 MEF2D DGCR8 RPL7AP70 LOC100420177 THAP7 THAP7-AS1 TUBA3GP RPL8P5 TBX1 TUBA3FP LOC105372938
GH22F021936 1.5 FANTOM5 ENCODE 25.9 +942.9 942862 17.5 HDGF PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF143 ENSG00000224086 TOP3BP1 TOP3B IGLV5-52 THAP7 THAP7-AS1 ENSG00000234630 ENSG00000272779 PPM1F PPIL2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around THAP7-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for THAP7-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000292002 514 2801 HDGF PKNOX1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9

Genomic Location for THAP7-AS1 Gene

Chromosome:
22
Start:
21,001,886 bp from pter
End:
21,010,374 bp from pter
Size:
8,489 bases
Orientation:
Plus strand

Genomic View for THAP7-AS1 Gene

Genes around THAP7-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
THAP7-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for THAP7-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for THAP7-AS1 Gene

Proteins for THAP7-AS1 Gene

Post-translational modifications for THAP7-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for THAP7-AS1 Gene

Domains & Families for THAP7-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for THAP7-AS1 Gene

Function for THAP7-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for THAP7-AS1 Gene

Localization for THAP7-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for THAP7-AS1 Gene

Pathways & Interactions for THAP7-AS1 Gene

SuperPathways for THAP7-AS1 Gene

No Data Available

Interacting Proteins for THAP7-AS1 Gene

Gene Ontology (GO) - Biological Process for THAP7-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for THAP7-AS1 Gene

Transcripts for THAP7-AS1 Gene

Unigene Clusters for THAP7-AS1 Gene

THAP7 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for THAP7-AS1 Gene

No ASD Table

Relevant External Links for THAP7-AS1 Gene

GeneLoc Exon Structure for
THAP7-AS1
ECgene alternative splicing isoforms for
THAP7-AS1

Expression for THAP7-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for THAP7-AS1 Gene

SOURCE GeneReport for Unigene cluster for THAP7-AS1 Gene:

Hs.517430
genes like me logo Genes that share expression patterns with THAP7-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for THAP7-AS1 Gene

Orthologs for THAP7-AS1 Gene

Evolution for THAP7-AS1 Gene

ENSEMBL:
Gene Tree for THAP7-AS1 (if available)
TreeFam:
Gene Tree for THAP7-AS1 (if available)

No data available for Orthologs for THAP7-AS1 Gene

Paralogs for THAP7-AS1 Gene

No data available for Paralogs for THAP7-AS1 Gene

Variants for THAP7-AS1 Gene

Sequence variations from dbSNP and Humsavar for THAP7-AS1 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs1053775 -- 21,002,864(+) GAATA(C/T)AGAGG intron-variant, upstream-variant-2KB
rs1053777 -- 21,003,050(+) GGCCG(A/C)ACTTA intron-variant, nc-transcript-variant, upstream-variant-2KB
rs11090506 -- 21,004,492(+) tttga(A/G)atgga intron-variant
rs111960103 -- 21,003,615(+) CTCTG(C/T)CTCAG intron-variant, upstream-variant-2KB
rs112331442 -- 21,004,434(+) CCGGC(A/C)CATAT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for THAP7-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv4483n100 CNV gain 25217958
dgv7993n54 CNV gain 21841781
dgv7994n54 CNV gain 21841781
esv2678175 CNV deletion 23128226
esv2763693 CNV gain 21179565
esv3647304 CNV loss 21293372
esv3647305 CNV gain 21293372
esv3647307 CNV loss 21293372
esv3647308 CNV loss 21293372
esv3893441 CNV gain+loss 25118596
nsv1056614 CNV loss 25217958
nsv1062280 CNV gain 25217958
nsv1065617 CNV gain 25217958
nsv436864 CNV insertion 17901297
nsv471185 CNV loss 18288195
nsv482071 CNV gain 20164927
nsv964590 CNV duplication 23825009
nsv834142 CNV gain 17160897
nsv834141 CNV loss 17160897
nsv828961 CNV gain 20364138
nsv828960 CNV loss 20364138
nsv588306 CNV gain 21841781
nsv588305 CNV loss 21841781
nsv523162 CNV loss 19592680

Relevant External Links for THAP7-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
THAP7-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for THAP7-AS1 Gene

Disorders for THAP7-AS1 Gene

Relevant External Links for THAP7-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
THAP7-AS1

No disorders were found for THAP7-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for THAP7-AS1 Gene

Publications for THAP7-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for THAP7-AS1 Gene

Sources for THAP7-AS1 Gene

Content
Loading form....