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Aliases for THAP7 Gene

Aliases for THAP7 Gene

  • THAP Domain Containing 7 2 3

External Ids for THAP7 Gene

Previous GeneCards Identifiers for THAP7 Gene

  • GC22M019678
  • GC22M021353
  • GC22M004622

Summaries for THAP7 Gene

GeneCards Summary for THAP7 Gene

THAP7 (THAP Domain Containing 7) is a Protein Coding gene. GO annotations related to this gene include protein N-terminus binding and C2H2 zinc finger domain binding.

UniProtKB/Swiss-Prot for THAP7 Gene

  • Chromatin-associated, histone tail-binding protein that represses transcription via recruitment of HDAC3 and nuclear hormone receptor corepressors.

Gene Wiki entry for THAP7 Gene

No data available for Entrez Gene Summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for THAP7 Gene

Genomics for THAP7 Gene

Regulatory Elements for THAP7 Gene

Genomic Location for THAP7 Gene

Start:
20,999,104 bp from pter
End:
21,002,196 bp from pter
Size:
3,093 bases
Orientation:
Minus strand

Genomic View for THAP7 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for THAP7 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for THAP7 Gene

Proteins for THAP7 Gene

  • Protein details for THAP7 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BT49-THAP7_HUMAN
    Recommended name:
    THAP domain-containing protein 7
    Protein Accession:
    Q9BT49
    Secondary Accessions:
    • B2RD97
    • D3DX40

    Protein attributes for THAP7 Gene

    Size:
    309 amino acids
    Molecular mass:
    34414 Da
    Quaternary structure:
    • Interacts with HDAC3 and nuclear hormone receptor corepressors.

neXtProt entry for THAP7 Gene

Proteomics data for THAP7 Gene at MOPED

Post-translational modifications for THAP7 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for THAP7 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for THAP7 Gene

Domains for THAP7 Gene

Gene Families for THAP7 Gene

HGNC:
  • THAP :THAP (C2CH-type zinc finger) domain containing

Protein Domains for THAP7 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for THAP7 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9BT49

UniProtKB/Swiss-Prot:

THAP7_HUMAN :
  • Q9BT49
Similarity:
  • Contains 1 THAP-type zinc finger.
genes like me logo Genes that share domains with THAP7: view

Function for THAP7 Gene

Molecular function for THAP7 Gene

UniProtKB/Swiss-Prot Function: Chromatin-associated, histone tail-binding protein that represses transcription via recruitment of HDAC3 and nuclear hormone receptor corepressors.

Gene Ontology (GO) - Molecular Function for THAP7 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding --
GO:0003677 DNA binding IEA --
GO:0005515 protein binding IPI 16189514
GO:0046872 metal ion binding IEA --
GO:0047485 protein N-terminus binding IPI 17577209
genes like me logo Genes that share ontologies with THAP7: view

miRNA for THAP7 Gene

miRTarBase miRNAs that target THAP7

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for THAP7 Gene

Localization for THAP7 Gene

Subcellular locations from UniProtKB/Swiss-Prot for THAP7 Gene

Nucleus. Chromosome.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for THAP7 Gene COMPARTMENTS Subcellular localization image for THAP7 gene
Compartment Confidence
nucleus 5
extracellular 2
cytoskeleton 1
cytosol 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for THAP7 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005694 chromosome IEA --
GO:0016607 nuclear speck IDA 17577209
genes like me logo Genes that share ontologies with THAP7: view

Pathways for THAP7 Gene

SuperPathways for THAP7 Gene

No Data Available

Gene Ontology (GO) - Biological Process for THAP7 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0045892 negative regulation of transcription, DNA-templated IDA 17577209
genes like me logo Genes that share ontologies with THAP7: view

No data available for Pathways by source for THAP7 Gene

Transcripts for THAP7 Gene

Unigene Clusters for THAP7 Gene

THAP domain containing 7:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for THAP7 Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b ^ 3a · 3b · 3c · 3d · 3e ^ 4a · 4b ^ 5a · 5b · 5c ^ 6a · 6b · 6c ^ 7a · 7b · 7c · 7d · 7e · 7f · 7g
SP1: - - - - - - - - -
SP2: - - - - - - - - - - -
SP3: - - - - - - - -
SP4: - - -
SP5: - - - -
SP6: -
SP7: -
SP8: - -
SP9: - - - - - - -
SP10:

Relevant External Links for THAP7 Gene

GeneLoc Exon Structure for
THAP7
ECgene alternative splicing isoforms for
THAP7

Expression for THAP7 Gene

mRNA expression in normal human tissues for THAP7 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for THAP7 Gene

SOURCE GeneReport for Unigene cluster for THAP7 Gene Hs.512756

genes like me logo Genes that share expressions with THAP7: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for THAP7 Gene

Orthologs for THAP7 Gene

This gene was present in the common ancestor of chordates.

Orthologs for THAP7 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia THAP7 35
  • 99.35 (n)
  • 99.35 (a)
THAP7 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia THAP7 35
  • 90.26 (n)
  • 97.4 (a)
THAP7 36
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia THAP7 35
  • 91.05 (n)
  • 96.76 (a)
THAP7 36
  • 96 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Thap7 35
  • 89 (n)
  • 92.88 (a)
Thap7 16
Thap7 36
  • 93 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Thap7 35
  • 87.92 (n)
  • 91.91 (a)
chicken
(Gallus gallus)
Aves THAP7 35
  • 64.82 (n)
  • 64.82 (a)
THAP7 36
  • 53 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia THAP7 36
  • 60 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.10237 35
thap7 35
  • 56.66 (n)
  • 57.76 (a)
zebrafish
(Danio rerio)
Actinopterygii thap7 35
  • 48.91 (n)
  • 44.83 (a)
thap7 36
  • 21 (a)
OneToOne
Species with no ortholog for THAP7:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for THAP7 Gene

ENSEMBL:
Gene Tree for THAP7 (if available)
TreeFam:
Gene Tree for THAP7 (if available)

Paralogs for THAP7 Gene

No data available for Paralogs for THAP7 Gene

Variants for THAP7 Gene

Sequence variations from dbSNP and Humsavar for THAP7 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type MAF
rs12574 -- 20,999,869(+) TCAGT(C/G)CAGCA utr-variant-3-prime
rs3747084 -- 20,999,636(+) TCTGA(A/C/G)GGGTG downstream-variant-500B
rs186210017 -- 20,999,862(+) CCCTC(A/G)GTCAG utr-variant-3-prime
rs200109089 -- 20,999,836(+) AAGAG(A/G)CTGCA utr-variant-3-prime
rs201871807 -- 20,999,863(+) CCTCG(A/G)TCAGT utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for THAP7 Gene

Variant ID Type Subtype PubMed ID
nsv436864 CNV Insertion 17901297
nsv914390 CNV Gain 21882294
nsv523162 CNV Loss 19592680
esv2678175 CNV Deletion 23128226
nsv914419 CNV Gain 21882294
nsv834141 CNV Loss 17160897
dgv4872n71 CNV Loss 21882294
nsv914423 CNV Gain 21882294
nsv828960 CNV Loss 20364138
dgv4873n71 CNV Loss 21882294
nsv471185 CNV Loss 18288195
nsv834142 CNV Gain 17160897
nsv828961 CNV Gain 20364138
nsv914428 CNV Loss 21882294
nsv482071 CNV Gain 20164927

Relevant External Links for THAP7 Gene

HapMap Linkage Disequilibrium report
THAP7

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for THAP7 Gene

Disorders for THAP7 Gene

No disorders were found for THAP7 Gene.

No data available for UniProtKB/Swiss-Prot for THAP7 Gene

Publications for THAP7 Gene

  1. The THAP domain: a novel protein motif with similarity to the DNA-binding domain of P element transposase. (PMID: 12575992) Roussigne M. … Girard J.P. (Trends Biochem. Sci. 2003) 2 3
  2. A genome annotation-driven approach to cloning the human ORFeome. (PMID: 15461802) Collins J.E. … Dunham I. (Genome Biol. 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. Human THAP7 is a chromatin-associated, histone tail-binding protein that represses transcription via recruitment of HDAC3 and nuclear hormone receptor corepressor. (PMID: 15561719) Macfarlan T. … Chakravarti D. (J. Biol. Chem. 2005) 3 4
  5. Thanatos-associated protein 7 associates with template activating factor-Ibeta and inhibits histone acetylation to repress transcription. (PMID: 16195249) Macfarlan T. … Chakravarti D. (Mol. Endocrinol. 2006) 3 23

Products for THAP7 Gene

Sources for THAP7 Gene

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