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THAP10 Gene

protein-coding   GIFtS: 43
GCID: GC15M071173

THAP Domain Containing 10

  See related disease
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
THAP Domain Containing 101 2
THAP Domain-Containing Protein 102

External Ids:    HGNC: 231931   Entrez Gene: 569062   Ensembl: ENSG000001290287   OMIM: 6125385   UniProtKB: Q9P2Z03   

Export aliases for THAP10 gene to outside databases

Previous GC identifers: GC15M068749 GC15M068889 GC15M068960 GC15M048009


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for THAP10 Gene:
This gene encodes a member of a family of proteins sharing an N-terminal Thanatos-associated domain. The
Thanatos-associated domain contains a zinc finger signature similar to DNA-binding domains. This gene is part of
a bidirectional gene pair on the long arm of chromosome 15 that is regulated by estrogen and may play a role in
breast cancer. (provided by RefSeq, Nov 2010)

GeneCards Summary for THAP10 Gene:
THAP10 (THAP domain containing 10) is a protein-coding gene. Diseases associated with THAP10 include breast cancer.




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000015.10  NC_018926.2  NT_010194.18  
Regulatory elements:
   Regulatory transcription factor binding sites in the THAP10 gene promoter:
         RFX1   RP58   Elk-1   AP-1   Nkx2-2   Bach2   C/EBPalpha   FOXO1a   ZID   FOXO1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidTHAP10 promoter sequence
   Search Chromatin IP Primers for THAP10

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat THAP10


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 15q23   Ensembl cytogenetic band:  15q23   HGNC cytogenetic band: 15q22.32

THAP10 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
THAP10 gene location

GeneLoc information about chromosome 15         GeneLoc Exon Structure

GeneLoc location for GC15M071173:  view genomic region     (about GC identifiers)

Start:
71,173,681 bp from pter      End:
71,185,124 bp from pter
Size:
11,444 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: THA10_HUMAN, Q9P2Z0 (See protein sequence)
Recommended Name: THAP domain-containing protein 10  
Size: 257 amino acids; 28351 Da
Secondary accessions: B2R8R0

Explore the universe of human proteins at neXtProt for THAP10: NX_Q9P2Z0

Explore proteomics data for THAP10 at MOPED


See THAP10 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_064532.1  
ENSEMBL proteins: 
 ENSP00000249861   ENSP00000453920  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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HGNC Gene Families:
THAP: THAP (C2CH-type zinc finger) domain containing

1 InterPro protein domain:
 IPR006612 Znf_C2CH

Graphical View of Domain Structure for InterPro Entry Q9P2Z0

ProtoNet protein and cluster: Q9P2Z0

UniProtKB/Swiss-Prot: THA10_HUMAN, Q9P2Z0
Similarity: Contains 1 THAP-type zinc finger


THAP10 for domains           About GeneDecksing


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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     Gene Ontology (GO): 3 molecular function terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0003676nucleic acid binding ----
GO:0003677DNA binding IEA--
GO:0046872metal ion binding IEA--
     
THAP10 for ontologies           About GeneDecksing


Phenotypes:
     1 GenomeRNAi human phenotype for THAP10:
 Synthetic lethal with Ras 

Animal Models:
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SwitchGear 3'UTR luciferase reporter plasmidTHAP10 3' UTR sequence
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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
cytosol2
nucleus2
mitochondrion1
peroxisome1

(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for THAP10
Interactions:

    Search GeneGlobe Interaction Network for THAP10

STRING Interaction Network Preview (showing 3 interactants - click image to see more details)

5 Interacting proteins for THAP10 (Q9P2Z02, 3 ENSP000002498614) via UniProtKB, MINT, STRING, and/or I2D
InteractantInteraction Details
GeneCardExternal ID(s)
DYNLL2Q96FJ22, 3MINT-68009 I2D: score=4 
KRTAP4-12Q9BQ662, 3, ENSP000003775824MINT-66652 I2D: score=5 STRING: ENSP00000377582
CCNDBP1O952733I2D: score=1 
ELAVL1ENSP000003852694STRING: ENSP00000385269
--ENSP000002403434STRING: ENSP00000240343
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(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
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Browse Tocris compounds for THAP10 (THA10)



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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REFSEQ mRNAs for THAP10 gene: 
NM_020147.3  

Unigene Cluster for THAP10:

THAP domain containing 10
Hs.591123  [show with all ESTs]
Unigene Representative Sequence: NM_020147
2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000249861(uc002asv.3) ENST00000560604
miRNA
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SwitchGear 3'UTR luciferase reporter plasmidTHAP10 3' UTR sequence
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Additional mRNA sequence: 

AK313472.1 AL360202.1 BC027857.1 BC072414.1 

4 DOTS entries:

DT.215309  DT.210264  DT.100790193  DT.92034847 

Selected AceView cDNA sequences (see all 53):

BM674059 BX091586 NM_020147 BC072414 AW296810 BI836458 BM715616 AA411400 
BC027857 BP361383 BM728582 AI648560 AI338041 CR616569 CR619402 BE906653 
BP352827 BQ434320 BF979815 AI810129 BQ218337 BQ424963 BI334727 BX349092 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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THAP10 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: --
THAP10 Expression
About this image

THAP10 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

THAP10 Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.591123
    Custom PCR Arrays for THAP10
Primer
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In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for THAP10

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of eukaryotes.

Orthologs for THAP10 gene from Selected species (see all 5)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
dog
(Canis familiaris)
Mammalia THAP101 THAP domain containing 10 79.5(n)
76.19(a)
  611157  XM_848801.2  XP_853894.1 
soybean
(Glycine max)
eudicotyledons 467273812   -- 93.48(n)  


ENSEMBL Gene Tree for THAP10 (if available)
TreeFam Gene Tree for THAP10 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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  --

(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for THAP10 (see all 126)    About this table    
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 15 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1867262881,2
--71173298(+) TGACTC/GATGCC 1 -- ds50010--------
rs1465182231,2
--71173322(+) CTCTGA/GGAGAC 1 -- ds50010--------
rs1409658011,2
--71173379(+) GCAATA/GTAGTG 1 -- ds50010--------
rs1433933061,2
--71173546(+) CTGGGA/CGATAG 1 -- ds50010--------
rs1466868401,2
--71173577(+) ACAAGC/TAAACA 1 -- ds50010--------
rs1896313171,2
--71173667(+) CATTGG/TTCAGG 1 -- ds50010--------
rs620190731,2
C--71173822(+) ACATAT/CGAGGT 1 -- ut312Minor allele frequency- C:0.04NA 122
rs1402225571,2
C--71173962(+) ACGGGC/GCAGCT 1 -- ut310--------
rs1813813331,2
--71174035(+) CCTAAC/TACCTG 1 -- ut310--------
rs177821931,2
C,F,H--71174128(+) GTGTCG/ACAGTA 1 -- ut31 ese325Minor allele frequency- A:0.22NA NS EA 2780

HapMap Linkage Disequilibrium report for THAP10 (71173681 - 71185124 bp)

Structural Variations
     Database of Genomic Variants (DGV) 2 variations for THAP10:    About this table    
Variant IDTypeSubtypePubMed ID
dgv153n21CNV Loss19592680
nsv827381CNV Loss20364138

Site Specific Mutation Identification with PCR Assays
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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 612538    OMIM disorders: --

1 disease for THAP10:    
About MalaCards
breast cancer


THAP10 for disorders           About GeneDecksing


Export disorders for THAP10 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for THAP10 gene integrated from 10 sources:
(articles sorted by number of sources associating them with THAP10)
    Utopia: connect your pdf to the dynamic
world of online information

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
  2. The THAP domain: a novel protein motif with similarity to the DNA-binding domain of P element transposase. (PubMed id 12575992)1, 3 Roussigne M....Girard J.P. (Trends Biochem. Sci. 2003)
  3. Ubiquitin-mediated proteolysis of HuR by heat shock. (PubMed id 19322201)1 Abdelmohsen K....Gorospe M. (EMBO J. 2009)
  4. Silencing of LRRC49 and THAP10 genes by bidirectional promoter hypermethylation is a frequent event in breast cancer. (PubMed id 18575747)1 De Souza Santos E....Nagai M.A. (Int. J. Oncol. 2008)
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (Genome Res. 2006)
  6. Towards a proteome-scale map of the human protein-protein interaction network. (PubMed id 16189514)1 Rual J.F....Vidal M. (Nature 2005)
  7. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)2 Ota T.... Sugano S. (Nat. Genet. 2004)
  8. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
  9. (PubMed id )2 

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 56906 HGNC: 23193 AceView: THAP10 Ensembl:ENSG00000129028 euGenes: HUgn56906
ECgene: THAP10 H-InvDB: THAP10

(According to HUGE)
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  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for THAP10 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for THAP10 gene:
Search GeneIP for patents involving THAP10

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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 Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for THAP10
 SwitchGear 3'UTR luciferase reporter plasmids for THAP10
 SwitchGear Promoter luciferase reporter plasmids for THAP10
 Search ThermoFisher Antibodies for THAP10
 Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat THAP10
 inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for THAP10
 inGenious Targeting Laboratory: Contact us about creating complex and humanized mouse models for THAP10
 LSBio Antibodies in human, mouse, rat for THAP10
Customized transgenic rodents for:
 Humanization
 Biomarker expression
 Off-target effect monitoring
 Translational medicine
 Tissue-specific gene expresssion
 Time-controlled gene expresssion
 Browse compounds at ApexBio
       
GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014

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