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Aliases for THA1P Gene

Aliases for THA1P Gene

  • Threonine Aldolase 1, Pseudogene 2 3 5
  • GLY1 3

External Ids for THA1P Gene

Previous GeneCards Identifiers for THA1P Gene

  • GC17M073757
  • GC17M076245
  • GC17M071669

Summaries for THA1P Gene

GeneCards Summary for THA1P Gene

THA1P (Threonine Aldolase 1, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for THA1P Gene

Genomics for THA1P Gene

Regulatory Elements for THA1P Gene

Enhancers for THA1P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F078250 1.5 FANTOM5 ENCODE 27.6 +3.3 3321 4.7 HDGF PKNOX1 MLX CREB3L1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 SLC30A9 THA1P TMC8 TK1 AFMID LGALS3BP TMC6 TMEM235 TNRC6C ENSG00000279886 PIR55590
GH17F078255 1.4 FANTOM5 ENCODE 18.2 -1.5 -1510 4.3 HDGF PKNOX1 MLX ZFP64 SIN3A DMAP1 YY1 SLC30A9 ZNF207 FOS THA1P PGS1 SOCS3 TK1 AFMID TMC8 TMC6 LINC01993 TNRC6C C17orf99
GH17F078261 1.1 ENCODE 16.6 -6.8 -6826 2.7 PKNOX1 MLX ZFP64 ARID4B DMAP1 YY1 SLC30A9 KLF13 SP5 KAT8 THA1P TMEM235 SOCS3 PGS1 AFMID TK1 ENSG00000200063 LINC01993
GH17F078241 1.6 FANTOM5 Ensembl ENCODE 9.1 +13.8 13785 2.0 PKNOX1 MLX ZFP64 ARID4B SIN3A ZNF48 YY1 SLC30A9 ELK1 FOS THA1P TMEM235 SOCS3 TMC8 LOC105371910
GH17F078246 0.7 ENCODE 18.7 +8.7 8681 1.1 SOX13 L3MBTL2 SAP130 MLX ARID4B RARA SLC30A9 ZFX MGA EGR2 THA1P TK1 AFMID LOC105371910 TMEM235
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around THA1P on UCSC Golden Path with GeneCards custom track

Promoters for THA1P Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001354270 1785 1201 HDGF PKNOX1 CREB3L1 MLX ZFP64 ARID4B SIN3A DMAP1 SLC30A9 ZNF207

Genomic Location for THA1P Gene

Chromosome:
17
Start:
78,248,493 bp from pter
End:
78,256,185 bp from pter
Size:
7,693 bases
Orientation:
Minus strand

Genomic View for THA1P Gene

Genes around THA1P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
THA1P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for THA1P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for THA1P Gene

Proteins for THA1P Gene

Post-translational modifications for THA1P Gene

No Post-translational modifications

No data available for DME Specific Peptides for THA1P Gene

Domains & Families for THA1P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for THA1P Gene

Function for THA1P Gene

Phenotypes for THA1P Gene

genes like me logo Genes that share phenotypes with THA1P: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for THA1P Gene

Localization for THA1P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for THA1P Gene

Pathways & Interactions for THA1P Gene

SuperPathways for THA1P Gene

No Data Available

Interacting Proteins for THA1P Gene

Gene Ontology (GO) - Biological Process for THA1P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for THA1P Gene

Transcripts for THA1P Gene

mRNA/cDNA for THA1P Gene

(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for THA1P Gene

No ASD Table

Relevant External Links for THA1P Gene

GeneLoc Exon Structure for
THA1P
ECgene alternative splicing isoforms for
THA1P

Expression for THA1P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for THA1P Gene

NURSA nuclear receptor signaling pathways regulating expression of THA1P Gene:

THA1P
genes like me logo Genes that share expression patterns with THA1P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for THA1P Gene

Orthologs for THA1P Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for THA1P Gene

Organism Taxonomy Gene Similarity Type Details
wheat
(Triticum aestivum)
Liliopsida Ta.8615 34
Species where no ortholog for THA1P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for THA1P Gene

ENSEMBL:
Gene Tree for THA1P (if available)
TreeFam:
Gene Tree for THA1P (if available)

Paralogs for THA1P Gene

No data available for Paralogs for THA1P Gene

Variants for THA1P Gene

Relevant External Links for THA1P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
THA1P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for THA1P Gene

Disorders for THA1P Gene

Relevant External Links for THA1P

Genetic Association Database (GAD)
THA1P

No disorders were found for THA1P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for THA1P Gene

Publications for THA1P Gene

  1. Mice have a transcribed L-threonine aldolase/GLY1 gene, but the human GLY1 gene is a non-processed pseudogene. (PMID: 15757516) Edgar A.J. (BMC Genomics 2005) 2 3 22 64
  2. Identification and analysis of unitary pseudogenes: historic and contemporary gene losses in humans and other primates. (PMID: 20210993) Zhang Z.D. … Gerstein M. (Genome Biol. 2010) 3 64
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  4. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R. … Stanton L.W. (Nat. Biotechnol. 2004) 3 64
  5. Glycine metabolism in Candida albicans: characterization of the serine hydroxymethyltransferase (SHM1, SHM2) and threonine aldolase (GLY1) genes. (PMID: 10641038) McNeil J.B. … Pearlman R.E. (Yeast 2000) 22 64

Products for THA1P Gene

Sources for THA1P Gene

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