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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

TGIF2LX Gene

protein-coding   GIFtS: 44
GCID: GC0XP089176

TGFB-Induced Factor Homeobox 2-Like, X-Linked

(Previous names: TGFB-induced factor 2-like, X-linked)
  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
TGFB-Induced Factor Homeobox 2-Like, X-Linked1 2     TGFB-Induced Factor 2-Like Protein, X-Linked2 3
TGIFLX2 3 5     TGIF-Like On The X2 3
TGFB-Induced Factor 2-Like, X-Linked1 2     Homeobox Protein TGIF2LX2
TGF-Beta-Induced Transcription Factor 2-Like Protein2 3     

External Ids:    HGNC: 185701   Entrez Gene: 903162   Ensembl: ENSG000001537797   OMIM: 3004115   UniProtKB: Q8IUE13   

Export aliases for TGIF2LX gene to outside databases

Previous GC identifers: GC0XP084449 GC0XP086146 GC0XP087212 GC0XP087948 GC0XP088983 GC0XP089063


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for TGIF2LX Gene:
This gene encodes a member of the TALE/TGIF homeobox family of transcription factors. Testis-specific expression
suggests that this gene may play a role in spermatogenesis. A homolog of this gene lies within the male specific
region of chromosome Y, in a block of sequence that is thought to be the result of a large X-to-Y transposition.
(provided by RefSeq, Jul 2008)

GeneCards Summary for TGIF2LX Gene: 
TGIF2LX (TGFB-induced factor homeobox 2-like, X-linked) is a protein-coding gene. Diseases associated with TGIF2LX include azoospermia, and infertility. GO annotations related to this gene include sequence-specific DNA binding and sequence-specific DNA binding transcription factor activity. An important paralog of this gene is MEIS2.

UniProtKB/Swiss-Prot: TF2LX_HUMAN, Q8IUE1
Function: May have a transcription role in testis




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000023.10  NC_018934.2  NT_011651.17  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the TGIF2LX gene promoter:
         Oct-B1   POU2F2 (Oct-2.1)   oct-B2   oct-B3   POU2F2   CREB   POU2F2C   POU2F1   POU2F1a   POU2F2B   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidTGIF2LX promoter sequence
   Search SABiosciences Chromatin IP Primers for TGIF2LX

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat TGIF2LX


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: Xq21.31   Ensembl cytogenetic band:  Xq21.31   HGNC cytogenetic band: Xq21.31

TGIF2LX Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
TGIF2LX gene location

GeneLoc information about chromosome X         GeneLoc Exon Structure

GeneLoc location for GC0XP089176:  view genomic region     (about GC identifiers)

Start:
89,176,881 bp from pter      End:
89,177,882 bp from pter
Size:
1,002 bases      Orientation:
plus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: TF2LX_HUMAN, Q8IUE1 (See protein sequence)
Recommended Name: Homeobox protein TGIF2LX  
Size: 241 amino acids; 26675 Da
Subcellular location: Nucleus (By similarity)
1 PDB 3D structure from and Proteopedia for TGIF2LX:
2DMN (3D)    
Secondary accessions: Q5JRM9 Q8TD48

Explore the universe of human proteins at neXtProt for TGIF2LX: NX_Q8IUE1

Explore proteomics data for TGIF2LX at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_Q8IUE1

  • TGIF2LX Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    TGIF2LX Protein Expression
    REFSEQ proteins: NP_620410.3  
    ENSEMBL proteins: 
     ENSP00000355119   ENSP00000453704  

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    Cloud-Clone Corp. Proteins for TGIF2LX 

    Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus IEA--

    TGIF2LX for ontologies           About GeneDecksing



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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    HGNC Gene Families: 
    TALE: Homeoboxes / TALE class

    3 InterPro protein domains:
     IPR001356 Homeodomain
     IPR009057 Homeodomain-like
     IPR008422 Homeobox_KN_domain

    Graphical View of Domain Structure for InterPro Entry Q8IUE1

    ProtoNet protein and cluster: Q8IUE1

    UniProtKB/Swiss-Prot: TF2LX_HUMAN, Q8IUE1
    Similarity: Belongs to the TALE/TGIF homeobox family
    Similarity: Contains 1 homeobox DNA-binding domain


    TGIF2LX for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: TF2LX_HUMAN, Q8IUE1
    Function: May have a transcription role in testis

         Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003677DNA binding ----
    GO:0003700sequence-specific DNA binding transcription factor activity IEA--
    GO:0043565sequence-specific DNA binding IEA--
         
    TGIF2LX for ontologies           About GeneDecksing


    Phenotypes:
         1 GenomeRNAi human phenotype for TGIF2LX:
     Decreased viability 

    Animal Models:
       inGenious Targeting Laboratory - Custom generated mouse model solutions for TGIF2LX 
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    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for TGIF2LX

    Gene Ontology (GO): 2 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006351transcription, DNA-dependent IEA--
    GO:0006355regulation of transcription, DNA-dependent ----

    TGIF2LX for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for TGIF2LX (TF2LX)

    Search CenterWatch for drugs/clinical trials and news about TGIF2LX / TF2LX

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for TGIF2LX gene: 
    NM_138960.3  

    Unigene Cluster for TGIF2LX:

    TGFB-induced factor homeobox 2-like, X-linked
    Hs.592220  [show with all ESTs]
    Unigene Representative Sequence: NM_138960
    2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000283891(uc004efe.3) ENST00000561129(uc022bzr.1)
    miRNA
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    Inhib. RNA
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    Browse for Gene Knock-down Tools from EMD Millipore
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      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat TGIF2LX
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat TGIF2LX

    Additional mRNA sequence: 

    AF497480.1 BC029920.2 BC101144.2 BC101145.1 BC117398.1 BC117400.1 

    1 DOTS entry:

    DT.97783734 

    6 AceView cDNA sequences:

    NM_138960 BC029920 BI830352 AF497480 AA608783 AA608782 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    TGIF2LX expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: --
    TGIF2LX Expression
    About this image


    See TGIF2LX Protein Expression from SPIRE MOPED and PaxDB
    SOURCE GeneReport for Unigene cluster: Hs.592220

    UniProtKB/Swiss-Prot: TF2LX_HUMAN, Q8IUE1
    Tissue specificity: Specifically expressed in adult testis

        SABiosciences Custom PCR Arrays for TGIF2LX
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TGIF2LX

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals and fungi.

    Orthologs for TGIF2LX gene from 3/7 species (see all 7)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Tgif2lx15
    Tgif2lx21
    TGFB-induced factor homeobox 2-like, X-linked 15
    TGFB-induced factor homeobox 2-like, X-linked 21
    63.54(n)1
    48.07(a)1
      X (49.58 cM)5
    1000395511  NM_001142750.11  NP_001136222.11 
     1184797085 
    fruit fly
    (Drosophila melanogaster)
    Insecta achi6
    vis6
    vismay
    12(a)
    12(a)
    many ↔ many
    many ↔ many
    2R(8399035-8402556)
    2R(8395396-8398311)
    baker's yeast
    (Saccharomyces cerevisiae)
    Saccharomycetes TOS86
    CUP96
    Homeodomain-containing protein and putative transc...
    Homeodomain-containing transcriptional repressor o...
    15(a)
    12(a)
    many ↔ many
    many ↔ many
    VII(325331-326161)
    XVI(213042-213962)


    ENSEMBL Gene Tree for TGIF2LX (if available)
    TreeFam Gene Tree for TGIF2LX (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for TGIF2LX gene
    MEIS22  TGIF2LY2  PKNOX12  MEIS32  TGIF22  PKNOX22  MEIS12  TGIF12  
    4 SIMAP similar genes for TGIF2LX using alignment to 2 protein entries:     TF2LX_HUMAN (see all proteins):
    TGIF2LY    TGIF1    TGIF2    WUGSC

    TGIF2LX for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/88 SNPs in TGIF2LX are shown (see all 88)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr X posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1824660781,2
    --89175348(+) AAAAGA/GAAACT 1 -- us2k10--------
    rs1878914351,2
    --89175498(+) TCTTGA/GAAAAA 1 -- us2k10--------
    rs1478792771,2
    --89175613(+) ATTTGC/GCCGGC 1 -- us2k10--------
    rs59839781,2
    C--89175616(+) TggccA/Ggctgc 1 -- us2k10--------
    rs1437233201,2
    C--89175746(+) TTAGCC/TGGGTG 1 -- us2k10--------
    rs1930022931,2
    --89175747(+) TAGCTA/GGGTGT 1 -- us2k10--------
    rs66150391,2
    C--89175917(+) AAATTT/AAAAAA 1 -- us2k1 tfbs31Minor allele frequency- A:0.50WA 2
    rs1856673211,2
    --89175967(+) GAATTA/CTATCT 1 -- us2k10--------
    rs66150401,2
    C--89176007(+) TCCCTG/AAATTT 1 -- us2k11Minor allele frequency- A:0.50WA 2
    rs59413971,2
    C,H--89176175(+) GGAGGC/TCGAGG 1 -- us2k11Minor allele frequency- T:0.50WA 2

    HapMap Linkage Disequilibrium report for TGIF2LX (89176881 - 89177882 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 3 variations for TGIF2LX:    About this table     
    Variant IDTypeSubtypePubMed ID
    esv1007468CNV Gain20482838
    esv28140CNV Gain+Loss19812545
    dgv2455e1CNV Complex17122850

    SABiosciences Cancer Mutation PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    OMIM gene information: 300411    OMIM disorders: --

    4 diseases for TGIF2LX:    About MalaCards
    azoospermia    infertility    prostate cancer    prostatitis


    TGIF2LX for disorders           About GeneDecksing

    Genetic Association Database (GAD): TGIF2LX
    Human Genome Epidemiology (HuGE) Navigator: TGIF2LX (1 document)

    Export disorders for TGIF2LX gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for TGIF2LX gene integrated from 9 sources:
    (articles sorted by number of sources associating them with TGIF2LX)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The DNA sequence of the human X chromosome. (PubMed id 15772651)1, 2 Ross M.T.... Bentley D.R. (2005)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    3. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. (PubMed id 12815422)1, 2 Skaletsky H.... Page D.C. (2003)
    4. The human-specific Yp11.2/Xq21.3 homology block encodes a potentially functional testis-specific TGIF-like retroposon. (PubMed id 12226713)1, 2 Blanco-Arias P.... Affara N.A. (2002)
    5. Genetically distinct subsets within ANCA-associated va sculitis. (PubMed id 22808956)1 Lyons P.A....Smith K.G. (2012)
    6. Association of TGIFLX/Y mRNA expression with prostate cancer. (PubMed id 18663611)1 Ousati Ashtiani Z....Heidari M. (2009)
    7. Association of TGIFLX/Y mRNA expression with azoospermia in infertile men. (PubMed id 18384077)1 Aarabi M....Heidari M. (2008)
    8. Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness. (PubMed id 17903302)4 Levy D....Mitchell G.F. (2007)
    9. Genetic correlates of longevity and selected age-related phenotypes: a genome-wide association study in the Framingham Study. (PubMed id 17903295)4 Lunetta K.L....Murabito J.M. (2007)
    10. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 90316 HGNC: 18570 AceView: TGIF2LX Ensembl:ENSG00000153779 euGenes: HUgn90316
    ECgene: TGIF2LX H-InvDB: TGIF2LX

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for TGIF2LX Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for TGIF2LX gene:
    Search GeneIP for patents involving TGIF2LX

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
    About This Section

     
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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 3 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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    Category
    (GIFtS: 73)
    transforming growth factor, beta 1
    GIFtS Group
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