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Aliases for TGIF2-C20orf24 Gene

Aliases for TGIF2-C20orf24 Gene

  • TGIF2-C20orf24 Readthrough 2 3

External Ids for TGIF2-C20orf24 Gene

Previous GeneCards Identifiers for TGIF2-C20orf24 Gene

  • GC20P035203

Summaries for TGIF2-C20orf24 Gene

Entrez Gene Summary for TGIF2-C20orf24 Gene

  • This locus represents naturally occurring read-through transcription between the neighboring TGIF2 (TGFB-induced factor homeobox 2) and C20orf24 (chromosome 20 open reading frame 24) genes. The read-through transcript encodes a fusion protein that shares sequence identity with each individual gene product. [provided by RefSeq, Dec 2010]

GeneCards Summary for TGIF2-C20orf24 Gene

TGIF2-C20orf24 (TGIF2-C20orf24 Readthrough) is a Protein Coding gene. Among its related pathways are Regulation of nuclear SMAD2/3 signaling. An important paralog of this gene is C20orf24.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TGIF2-C20orf24 Gene

Genomics for TGIF2-C20orf24 Gene

Genomic Location for TGIF2-C20orf24 Gene

Start:
36,574,553 bp from pter
End:
36,612,557 bp from pter
Size:
38,005 bases
Orientation:
Plus strand

Genomic View for TGIF2-C20orf24 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TGIF2-C20orf24 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TGIF2-C20orf24 Gene

No data available for Regulatory Elements for TGIF2-C20orf24 Gene

Proteins for TGIF2-C20orf24 Gene

  • Protein details for TGIF2-C20orf24 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0A6YYL0
    Recommended name:
    Protein TGIF2-C20orf24
    Protein Accession:
    A0A0A6YYL0
    Secondary Accessions:

    Protein attributes for TGIF2-C20orf24 Gene

    Size:
    155 amino acids
    Molecular mass:
    17908 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TGIF2-C20orf24 Gene

Proteomics data for TGIF2-C20orf24 Gene at MOPED

Protein Expression for TGIF2-C20orf24 Gene

Post-translational modifications for TGIF2-C20orf24 Gene

No Post-translational modifications

Other Protein References for TGIF2-C20orf24 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for TGIF2-C20orf24 Gene

Domains for TGIF2-C20orf24 Gene

Protein Domains for TGIF2-C20orf24 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TGIF2-C20orf24: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TGIF2-C20orf24 Gene

Function for TGIF2-C20orf24 Gene

Gene Ontology (GO) - Molecular Function for TGIF2-C20orf24 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding --
genes like me logo Genes that share ontologies with TGIF2-C20orf24: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TGIF2-C20orf24 Gene

Localization for TGIF2-C20orf24 Gene

Gene Ontology (GO) - Cellular Components for TGIF2-C20orf24 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005739 mitochondrion --
genes like me logo Genes that share ontologies with TGIF2-C20orf24: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for TGIF2-C20orf24 Gene

Pathways for TGIF2-C20orf24 Gene

genes like me logo Genes that share pathways with TGIF2-C20orf24: view

Pathways by source for TGIF2-C20orf24 Gene

1 BioSystems pathway for TGIF2-C20orf24 Gene

Interacting Proteins for TGIF2-C20orf24 Gene

Gene Ontology (GO) - Biological Process for TGIF2-C20orf24 Gene

None

Transcripts for TGIF2-C20orf24 Gene

mRNA/cDNA for TGIF2-C20orf24 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TGIF2-C20orf24 Gene

No ASD Table

Relevant External Links for TGIF2-C20orf24 Gene

GeneLoc Exon Structure for
TGIF2-C20orf24
ECgene alternative splicing isoforms for
TGIF2-C20orf24

Expression for TGIF2-C20orf24 Gene

Protein differential expression in normal tissues for TGIF2-C20orf24 Gene

This gene is overexpressed in Platelet (52.3) and Heart (16.7).

Integrated Proteomics: protein expression from PaxDb and MaxQB for TGIF2-C20orf24 Gene

Expression partners for TGIF2-C20orf24 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for TGIF2-C20orf24 Gene

Orthologs for TGIF2-C20orf24 Gene

This gene was present in the common ancestor of animals.

Orthologs for TGIF2-C20orf24 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia RIP5 36
  • 78 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TGIF2-C20orf24 36
  • 78 (a)
OneToOne
mouse
(Mus musculus)
Mammalia 1110008F13Rik 36
  • 78 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 71 (a)
OneToMany
chimpanzee
(Pan troglodytes)
Mammalia TGIF2 36
  • 78 (a)
OneToOne
chicken
(Gallus gallus)
Aves C20H20ORF24 36
  • 65 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 60 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii C23H20orf24 36
  • 65 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta CG12107 36
  • 44 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea F44E7.9 36
  • 34 (a)
OneToMany
Species with no ortholog for TGIF2-C20orf24:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for TGIF2-C20orf24 Gene

ENSEMBL:
Gene Tree for TGIF2-C20orf24 (if available)
TreeFam:
Gene Tree for TGIF2-C20orf24 (if available)

Paralogs for TGIF2-C20orf24 Gene

Paralogs for TGIF2-C20orf24 Gene

genes like me logo Genes that share paralogs with TGIF2-C20orf24: view

Variants for TGIF2-C20orf24 Gene

Sequence variations from dbSNP and Humsavar for TGIF2-C20orf24 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type MAF
rs6016013 -- 36,596,694(+) gggat(A/C)tgcca intron-variant
rs6016020 -- 36,602,768(+) ctggg(C/T)gtggt intron-variant
rs6028267 -- 36,595,048(+) CCATC(A/G/T)TTTTT intron-variant
rs6028274 -- 36,596,494(+) TGGCC(A/G)GGTgg intron-variant
rs6028280 -- 36,597,167(+) tgaca(A/G)ggcaa intron-variant

Relevant External Links for TGIF2-C20orf24 Gene

HapMap Linkage Disequilibrium report
TGIF2-C20orf24

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for TGIF2-C20orf24 Gene

Disorders for TGIF2-C20orf24 Gene

No disorders were found for TGIF2-C20orf24 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for TGIF2-C20orf24 Gene

Publications for TGIF2-C20orf24 Gene

  1. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T. … Taylor T.D. (PLoS ONE 2010) 3
  2. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 3

Products for TGIF2-C20orf24 Gene

Sources for TGIF2-C20orf24 Gene

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